Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g100480.3 Solanum lycopersicum HOM05D004265 ORTHO05D005175 5.2e-119 431.4 275 100.0
PGSC0003DMG400002801 Solanum tuberosum HOM05D004265 ORTHO05D005175 1.6e-107 393.3 278 88.8
Nitab4.5_0004873g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 3.7e-101 372.1 278 83.8
Nitab4.5_0000368g0100 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.2e-99 367.1 278 83.8
Sopen01g043990 Solanum pennellii HOM05D004265 ORTHO05D005175 3.5e-99 365.5 230 96.5
Peaxi162Scf00673g00321 Petunia axillaris HOM05D004265 ORTHO05D005175 2.3e-90 336.3 278 79.5
Cc02_g35030 Coffea canephora HOM05D004265 ORTHO05D005175 3.4e-70 269.2 241 68.9
Thecc.05G323000 Theobroma cacao HOM05D004265 ORTHO05D005175 5.1e-66 255.4 248 56.5
Actinidia01508 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.6e-66 255.0 213 59.2
TWI56G1455 Tripterygium wilfordii HOM05D004265 ORTHO05D005175 4.3e-65 252.3 231 57.6
arahy.Tifrunner.gnm1.ann1.S7F1TF Arachis hypogaea HOM05D004265 ORTHO05D005175 5.6e-65 251.9 261 51.7
Atru.chr2.195 Acer truncatum HOM05D004265 ORTHO05D005175 7.3e-65 251.5 249 53.4
arahy.Tifrunner.gnm1.ann1.7983KJ Arachis hypogaea HOM05D004265 ORTHO05D005175 3.6e-64 249.2 261 52.1
SalBow7G1726 Salvia bowleyana HOM05D004265 ORTHO05D005175 3.6e-64 249.2 240 53.8
Duzib106G0903 Durio zibethinus HOM05D004265 ORTHO05D005175 1.4e-63 247.3 248 60.5
ECA234G3802 Erigeron canadensis HOM05D004265 ORTHO05D005175 1.4e-63 247.3 270 48.9
TPR.G2612 Trifolium pratense HOM05D004265 ORTHO05D005175 2.4e-63 246.5 247 55.1
Lsat_1_v5_gn_5_104100 Lactuca sativa HOM05D004265 ORTHO05D005175 4.0e-63 245.7 206 56.3
Lj5g0009766 Lotus japonicus HOM05D004265 ORTHO05D005175 5.3e-63 245.4 241 54.8
CANSAT54G0622 Cannabis sativa HOM05D004265 ORTHO05D005175 9.0e-63 244.6 251 53.0
Dinv24444 Davidia involucrata HOM05D004265 ORTHO05D005175 1.2e-62 244.2 229 60.3
Eucgr.H03290 Eucalyptus grandis HOM05D004265 ORTHO05D005175 1.2e-62 244.2 247 53.0
HanXRQChr10g0294471 Helianthus annuus HOM05D004265 ORTHO05D005175 1.5e-62 243.8 207 57.5
SGA_v2.0_scaffold53G19289 Striga asiatica HOM05D004265 ORTHO05D005175 2.0e-62 243.4 252 63.1
CiPaw.08G155500 Carya illinoinensis HOM05D004265 ORTHO05D005175 4.4e-62 242.3 268 55.2
Cpa.g.sc48.160 Carica papaya HOM05D004265 ORTHO05D005175 5.8e-62 241.9 238 55.0
Hund21868 Selenicereus undatus HOM05D004265 ORTHO05D005175 5.8e-62 241.9 234 58.5
CSS0008259 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 7.6e-62 241.5 212 67.0
Dinv30893 Davidia involucrata HOM05D004265 ORTHO05D005175 7.6e-62 241.5 211 59.7
Carub.0002s0772 Capsella rubella HOM05D004265 ORTHO05D005175 1.3e-61 240.7 214 58.9
Lalb_Chr02g0147811 Lupinus albus HOM05D004265 ORTHO05D005175 1.7e-61 240.4 273 51.3
Nn3g16212 Nelumbo nucifera HOM05D004265 ORTHO05D005175 1.7e-61 240.4 237 63.3
Ciclev10002200m.g Citrus clementina HOM05D004265 ORTHO05D005175 2.9e-61 239.6 251 57.8
PGR031G2746 Punica granatum HOM05D004265 ORTHO05D005175 2.9e-61 239.6 230 65.2
Peaxi162Scf00750g00013 Petunia axillaris HOM05D001712 ORTHO05D001731 6.4e-61 238.4 188 61.2
Potri.005G017400 Populus trichocarpa HOM05D004265 ORTHO05D005175 8.4e-61 238.0 230 54.8
QL03p039848 Quercus lobata HOM05D004265 ORTHO05D005175 8.4e-61 238.0 243 57.2
MBI18_g17317_MAGBIO Magnolia biondii HOM05D004265 ORTHO05D005175 1.1e-60 237.7 207 63.3
Medtr1g084040 Medicago truncatula HOM05D004265 ORTHO05D005175 1.4e-60 237.3 254 50.0
Phvul.007G201300 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 1.9e-60 236.9 241 53.5
AL1G66120 Arabidopsis lyrata HOM05D004265 ORTHO05D005175 4.2e-60 235.7 214 62.1
Migut.B00969 Erythranthe guttata HOM05D004265 ORTHO05D005175 5.4e-60 235.3 287 48.1
CARHR055200 Cardamine hirsuta HOM05D004265 ORTHO05D005175 9.3e-60 234.6 214 56.1
AUR62006753 Chenopodium quinoa HOM05D004265 ORTHO05D005175 1.2e-59 234.2 211 59.2
MD12G1206000 Malus domestica HOM05D004265 ORTHO05D005175 1.2e-59 234.2 252 50.8
Aqoxy2G02767 Aquilegia oxysepala HOM05D004265 ORTHO05D005175 1.6e-59 233.8 216 65.7
Hma1.2p1_0052F.1_g030750 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 2.1e-59 233.4 237 53.2
Peaxi162Scf00484g00005 Petunia axillaris HOM05D004265 ORTHO05D005175 2.1e-59 233.4 190 60.5
AT1G56423 Arabidopsis thaliana HOM05D004265 ORTHO05D005175 6.0e-59 231.9 208 63.5
Glyma.20G097600 Glycine max HOM05D004265 ORTHO05D005175 6.0e-59 231.9 261 51.0
PSO210G0294 Papaver somniferum HOM05D004265 ORTHO05D005175 1.3e-58 230.7 238 52.1
AUR62000397 Chenopodium quinoa HOM05D004265 ORTHO05D005175 3.0e-58 229.6 210 60.5
Medtr7g112110 Medicago truncatula HOM05D004265 ORTHO05D005175 3.0e-58 229.6 201 57.2
Sc16g0009030 Simmondsia chinensis HOM05D004265 ORTHO05D005175 3.0e-58 229.6 237 52.3
QL03p013649 Quercus lobata HOM05D004265 ORTHO05D005175 3.9e-58 229.2 290 54.1
Lj1g0016387 Lotus japonicus HOM05D004265 ORTHO05D005175 1.1e-57 227.6 209 56.0
VMungo0720G2336 Vigna mungo HOM05D004265 ORTHO05D005175 1.9e-57 226.9 241 51.9
Glyma.10G147100 Glycine max HOM05D004265 ORTHO05D005175 2.5e-57 226.5 262 50.0
PSO761G0637 Papaver somniferum HOM05D004265 ORTHO05D005175 9.6e-57 224.6 237 52.3
Prupe.6G313200 Prunus persica HOM05D004265 ORTHO05D005175 2.8e-56 223.0 234 59.4
Sed0011283 Sechium edule HOM05D004265 ORTHO05D005175 2.8e-56 223.0 202 61.9
EL10Ac4g09452 Beta vulgaris HOM05D004265 ORTHO05D005175 3.6e-56 222.6 210 59.0
GSVIVG01031240001 Vitis vinifera HOM05D004265 ORTHO05D005175 3.6e-56 222.6 247 53.0
Potri.013G008700 Populus trichocarpa HOM05D004265 ORTHO05D005175 6.2e-56 221.9 216 53.2
RcHm_v2.0_Chr3g0457041 Rosa chinensis HOM05D004265 ORTHO05D005175 6.2e-56 221.9 201 53.2
Psat0s3400g0040 Pisum sativum HOM05D004265 ORTHO05D005175 1.1e-55 221.1 255 59.2
Rhsim05G0126500 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.1e-55 221.1 222 52.3
Os03g0307000 Oryza sativa ssp. japonica HOM05D004265 ORTHO05D005175 1.4e-55 220.7 247 54.3
SEGI_19544 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 1.4e-55 220.7 200 64.5
Sabra05G0011400 Salix brachista HOM05D004265 ORTHO05D005175 4.0e-55 219.2 212 53.8
ATR0796G255 Amborella trichopoda HOM05D004265 ORTHO05D005175 5.3e-55 218.8 207 66.2
HPP92_026862 Vanilla planifolia HOM05D004265 ORTHO05D005175 9.0e-55 218.0 193 57.5
Psat3g012800 Pisum sativum HOM05D004265 ORTHO05D005175 1.5e-54 217.2 203 58.6
Medtr7g112120 Medicago truncatula HOM05D004265 ORTHO05D005175 3.4e-54 216.1 200 55.5
unitig_37.g12619 Utricularia gibba HOM05D004265 ORTHO05D005175 3.4e-54 216.1 226 50.0
Ca_09300_v3 Cicer arietinum L. HOM05D001672 ORTHO05D007349 5.8e-54 215.3 219 51.1
Ah.04g158690 Amaranthus hybridus HOM05D004265 ORTHO05D005175 7.6e-54 214.9 183 62.3
BolC9t55323H Brassica oleracea HOM05D004265 ORTHO05D005175 7.6e-54 214.9 212 67.5
BcaC04g22056 Brassica carinata HOM05D004265 ORTHO05D005175 9.9e-54 214.5 222 64.9
C09p24060 Brassica napus HOM05D004265 ORTHO05D005175 1.7e-53 213.8 222 64.9
Lj5P334T30 Lonicera japonica HOM05D004265 ORTHO05D005175 1.7e-53 213.8 214 62.1
FAN05G3791 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.9e-53 212.2 198 64.1
FAN09G1150 Fragaria x ananassa HOM05D004265 ORTHO05D005175 4.9e-53 212.2 198 64.1
Glyma.19G228500 Glycine max HOM05D004265 ORTHO05D005175 4.9e-53 212.2 215 50.7
Sp2g06420 Schrenkiella parvula HOM05D004265 ORTHO05D005175 4.9e-53 212.2 213 54.0
Lalb_Chr18g0046091 Lupinus albus HOM05D004265 ORTHO05D005175 2.4e-52 209.9 198 53.5
BraA09t37526Z Brassica rapa HOM05D004265 ORTHO05D005175 4.2e-52 209.1 194 72.7
BcaB07g31123 Brassica carinata HOM05D004265 ORTHO05D005175 5.5e-52 208.8 226 64.6
Duzib177G0587 Durio zibethinus HOM05D004265 ORTHO05D005175 9.3e-52 208.0 235 49.4
FvH4_6g07440 Fragaria vesca HOM05D004265 ORTHO05D005175 9.3e-52 208.0 201 62.7
FAN14G5021 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.3e-52 208.0 201 62.7
Gohir.A13G175800 Gossypium hirsutum HOM05D004265 ORTHO05D005175 9.3e-52 208.0 247 56.3
CDE11G0488 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 2.7e-51 206.5 231 56.7
Zm00001eb396130 Zea mays HOM05D004265 ORTHO05D005175 6.0e-51 205.3 249 45.8
Gohir.D13G181500 Gossypium hirsutum HOM05D004265 ORTHO05D005175 8.7e-50 201.4 248 56.5
Gorai.013G207000 Gossypium raimondii HOM05D004265 ORTHO05D005175 8.7e-50 201.4 248 56.5
Thhalv10023634m.g Eutrema salsugineum HOM05D004265 ORTHO05D005175 1.5e-49 200.7 204 66.7
Manes.08G111300 Manihot esculenta HOM05D004265 ORTHO05D005175 1.9e-49 200.3 203 50.7
Ca_10171_v3 Cicer arietinum L. HOM05D004265 ORTHO05D005175 2.5e-49 199.9 242 47.5
MD04G1193100 Malus domestica HOM05D004265 ORTHO05D005175 5.6e-49 198.7 193 61.7
Phvul.001G225100 Phaseolus vulgaris HOM05D004265 ORTHO05D005175 5.6e-49 198.7 203 49.3
VMungo1383G0172 Vigna mungo HOM05D004265 ORTHO05D005175 1.3e-48 197.6 204 58.8
A09p19080 Brassica napus HOM05D004265 ORTHO05D005175 2.8e-48 196.4 243 60.1
SHI18053 Sapria himalayana HOM05D001712 ORTHO05D001731 3.7e-48 196.1 190 51.1
CiPaw.07G029600 Carya illinoinensis HOM05D004265 ORTHO05D005175 6.2e-48 195.3 234 46.6
Gohir.D11G299703 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.2e-48 195.3 211 58.3
Gohir.D11G307566 Gossypium hirsutum HOM05D004265 ORTHO05D005175 6.2e-48 195.3 211 58.3
Gorai.007G338000 Gossypium raimondii HOM05D004265 ORTHO05D005175 6.2e-48 195.3 211 58.3
Cfa006702 Carpinus fangiana HOM05D004265 ORTHO05D005175 8.1e-48 194.9 271 46.1
Gohir.A11G293141 Gossypium hirsutum HOM05D004265 ORTHO05D005175 1.1e-47 194.5 211 58.3
ClCG00G002440 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.4e-47 193.4 248 58.5
ClCG02G014940 Citrullus lanatus HOM05D004265 ORTHO05D005175 2.4e-47 193.4 248 58.5
Manes.09G176700 Manihot esculenta HOM05D004265 ORTHO05D005175 3.1e-47 193.0 246 46.3
FAN02G3541 Fragaria x ananassa HOM05D004265 ORTHO05D005175 9.0e-47 191.4 181 65.2
HPP92_003567 Vanilla planifolia HOM05D004265 ORTHO05D005175 2.6e-46 189.9 243 54.3
THA.LOC104816889 Tarenaya hassleriana HOM05D004265 ORTHO05D005175 3.4e-46 189.5 216 58.3
Lsat_1_v5_gn_9_122281 Lactuca sativa HOM05D004265 ORTHO05D005175 4.2e-44 182.6 199 45.7
MELO3C004187.2 Cucumis melo HOM05D004265 ORTHO05D005175 5.5e-44 182.2 246 56.1
Aa31LG2G11490 Aethionema arabicum HOM05D004265 ORTHO05D005175 2.7e-43 179.9 213 59.2
SMO119G0102 Selaginella moellendorffii HOM05D004265 ORTHO05D005175 3.5e-43 179.5 176 47.7
Oeu013207.1 Olea europaea HOM05D004265 ORTHO05D005175 3.9e-42 176.0 155 56.1
Glyma.03G231300 Glycine max HOM05D004265 ORTHO05D005175 6.7e-42 175.3 231 48.5
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 4.3e-41 172.6 226 44.2
AagrBONN_evm.TU.Sc2ySwM_228.834 Anthoceros agrestis HOM05D004265 ORTHO05D005175 7.4e-41 171.8 199 44.2
DCAR_029352 Daucus carota HOM05D004265 ORTHO05D005175 9.6e-41 171.4 189 54.0
CSS0024329 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.3e-40 171.0 200 45.0
CSS0041734 Camellia sinensis var. sinensis HOM05D004265 ORTHO05D005175 1.3e-40 171.0 200 45.0
Actinidia25851 Actinidia chinensis HOM05D004265 ORTHO05D005175 6.3e-40 168.7 188 46.3
HanXRQChr03g0072861 Helianthus annuus HOM05D004265 ORTHO05D005175 1.1e-39 167.9 190 45.3
DCAR_005425 Daucus carota HOM05D004265 ORTHO05D005175 4.1e-39 166.0 182 50.5
DCAR_025282 Daucus carota HOM05D004265 ORTHO05D005175 4.1e-39 166.0 155 62.6
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 1.2e-38 164.5 220 58.6
Zm00001eb014630 Zea mays HOM05D004265 ORTHO05D005175 1.5e-38 164.1 207 44.4
TAR362G0651 Trochodendron aralioides HOM05D004265 ORTHO05D005175 6.5e-37 158.7 166 63.3
Oeu016567.1 Olea europaea HOM05D004265 ORTHO05D005175 8.4e-37 158.3 124 64.5
arahy.Tifrunner.gnm1.ann1.7KQ9VF Arachis hypogaea HOM05D004265 ORTHO05D005175 1.6e-35 154.1 198 51.0
arahy.Tifrunner.gnm1.ann1.K90Y16 Arachis hypogaea HOM05D004265 ORTHO05D005175 1.6e-35 154.1 198 51.0
Rhsim01G0290900 Rhododendron simsii HOM05D004265 ORTHO05D005175 1.8e-34 150.6 200 40.5
SEGI_10604 Sequoiadendron giganteum HOM05D004265 ORTHO05D005175 7.4e-33 145.2 225 37.8
CsaV3_2G007060 Cucumis sativus L. HOM05D004265 ORTHO05D005175 1.6e-32 144.1 200 59.0
Mapoly0127s0047 Marchantia polymorpha HOM05D004265 ORTHO05D005175 2.2e-32 143.7 196 38.8
Dinv10100 Davidia involucrata HOM05D004265 ORTHO05D005175 1.4e-31 141.0 199 39.7
Pp3c8_19980 Physcomitrium patens HOM05D004265 ORTHO05D005175 4.5e-30 136.0 218 35.8
GSVIVG01019978001 Vitis vinifera HOM05D000618 ORTHO05D000454 2.9e-29 133.3 203 39.4
Lj2A1205T38 Lonicera japonica HOM05D004265 ORTHO05D005175 3.8e-29 132.9 198 38.9
CAN.G100.73 Capsicum annuum HOM05D004265 ORTHO05D005175 8.5e-29 131.7 203 37.9
Solyc01g079460.2 Solanum lycopersicum HOM05D004265 ORTHO05D005175 7.2e-28 128.6 194 36.1
Sopen01g031230 Solanum pennellii HOM05D004265 ORTHO05D005175 7.2e-28 128.6 194 36.1
Pp3c20_10160 Physcomitrium patens HOM05D004265 ORTHO05D005175 1.2e-27 127.9 228 32.9
TPR.G1662 Trifolium pratense HOM05D004265 ORTHO05D005175 6.1e-27 125.6 225 35.6
Nitab4.5_0003540g0020 Nicotiana tabacum HOM05D004265 ORTHO05D005175 1.8e-26 124.0 200 35.0
PGSC0003DMG400009008 Solanum tuberosum HOM05D004265 ORTHO05D005175 3.9e-26 122.9 185 35.1
Sed0005794 Sechium edule HOM05D004265 ORTHO05D005175 5.1e-26 122.5 268 34.3
SalBow2G0857 Salvia bowleyana HOM05D004265 ORTHO05D005175 2.0e-25 120.6 202 35.1
Hma1.2p1_0486F.1_g163300 Hydrangea macrophylla HOM05D004265 ORTHO05D005175 1.3e-24 117.9 150 40.7
Lsat_1_v5_gn_3_11681 Lactuca sativa HOM05D004265 ORTHO05D005175 4.8e-24 115.9 97 58.8
CDE05G2260 Ceratophyllum demersum HOM05D004265 ORTHO05D005175 7.2e-20 102.1 126 48.4
DCAR_018300 Daucus carota HOM05D004265 ORTHO05D005175 1.1e-17 94.7 219 32.4
Peaxi162Scf00691g00218 Petunia axillaris HOM05D004265 ORTHO05D005175 1.7e-16 90.9 156 31.4
Nitab4.5_0008277g0030 Nicotiana tabacum HOM05D004265 ORTHO05D005175 5.3e-15 85.9 156 30.1
Thecc.01G291900 Theobroma cacao HOM05D004265 ORTHO05D005175 5.9e-14 82.4 112 44.6
Lsat_1_v5_gn_9_123981 Lactuca sativa HOM05D001336 ORTHO05D001211 5.5e-12 75.9 61 55.7
Duzib133G1105 Durio zibethinus HOM05D004265 ORTHO05D045180 1.2e-11 74.7 218 27.5
Lsat_1_v5_gn_7_81020 Lactuca sativa HOM05D004265 ORTHO05D005175 6.1e-11 72.4 53 56.6
Lsat_1_v5_gn_6_35861 Lactuca sativa HOM05D004265 ORTHO05D005175 4.4e-09 66.2 51 54.9
CiPaw.14G122500 Carya illinoinensis HOM05D002542 ORTHO05D012505 7.5e-09 65.5 53 60.4
Thecc.01G313500 Theobroma cacao HOM05D004265 ORTHO05D045180 1.7e-08 64.3 217 25.8
QL03p013641 Quercus lobata HOM05D004265 ORTHO05D005175 1.1e-07 61.6 40 70.0
arahy.Tifrunner.gnm1.ann1.F5CMD4 Arachis hypogaea HOM05D004265 ORTHO05D005175 5.3e-07 59.3 156 28.8


User provided reference genes

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