Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g100190.4 Solanum lycopersicum HOM05D005552 ORTHO05D006743 0.0e+00 1177.9 591 100.0
Sopen01g043680 Solanum pennellii HOM05D005552 ORTHO05D006743 0.0e+00 1111.3 575 97.0
PGSC0003DMG400024733 Solanum tuberosum HOM05D005552 ORTHO05D006743 2.2e-308 1061.6 575 92.5
CAN.G1273.15 Capsicum annuum HOM05D005552 ORTHO05D006743 4.6e-298 1027.3 576 89.4
Nitab4.5_0002715g0120 Nicotiana tabacum HOM05D005552 ORTHO05D006743 7.1e-275 950.3 605 79.8
Sopen01g043710 Solanum pennellii HOM05D005552 ORTHO05D006743 9.6e-264 913.3 475 97.1
Nitab4.5_0000368g0430 Nicotiana tabacum HOM05D005552 ORTHO05D006743 1.0e-252 876.7 604 75.8
Peaxi162Scf00073g00015 Petunia axillaris HOM05D005552 ORTHO05D006743 2.2e-244 849.0 502 84.5
Dinv39890 Davidia involucrata HOM05D005552 ORTHO05D006743 3.0e-233 812.0 575 69.4
Cc02_g34610 Coffea canephora HOM05D005552 ORTHO05D006743 1.8e-230 802.7 574 67.8
Oeu020899.1 Olea europaea HOM05D005552 ORTHO05D006743 2.9e-228 795.4 575 68.2
Lj4C139G4 Lonicera japonica HOM05D005552 ORTHO05D006743 3.5e-221 771.9 578 65.7
CiPaw.01G023200 Carya illinoinensis HOM05D005552 ORTHO05D006743 6.5e-220 767.7 575 65.6
Actinidia12065 Actinidia chinensis HOM05D005552 ORTHO05D006743 8.5e-220 767.3 575 63.8
vmacro21371 Vaccinium macrocarpon HOM05D005552 ORTHO05D006743 8.0e-218 760.8 583 64.2
Cfa003976 Carpinus fangiana HOM05D005552 ORTHO05D006743 5.2e-217 758.1 575 64.9
QL06p042750 Quercus lobata HOM05D005552 ORTHO05D006743 3.4e-216 755.4 574 65.0
GSVIVG01003549001 Vitis vinifera HOM05D005552 ORTHO05D006743 8.3e-215 750.7 576 63.0
Potri.001G361900 Populus trichocarpa HOM05D005552 ORTHO05D006743 1.8e-214 749.6 577 64.6
CSS0032711 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 3.1e-214 748.8 575 65.0
COL.COLO4_11363 Corchorus olitorius HOM05D005552 ORTHO05D006743 7.0e-214 747.7 575 63.7
Thecc.01G050800 Theobroma cacao HOM05D005552 ORTHO05D006743 1.6e-213 746.5 575 62.6
Gohir.D11G196500 Gossypium hirsutum HOM05D005552 ORTHO05D006743 3.5e-213 745.3 575 63.0
MSTRG.5133 Avicennia marina HOM05D005552 ORTHO05D006743 1.7e-212 743.0 575 65.0
Gorai.007G210400 Gossypium raimondii HOM05D005552 ORTHO05D006743 2.9e-212 742.3 575 62.6
FAN28G0665 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.6e-212 740.7 576 64.2
Rhsim01G0119100 Rhododendron simsii HOM05D005552 ORTHO05D006743 5.5e-211 738.0 575 62.6
FAN26G2590 Fragaria x ananassa HOM05D005552 ORTHO05D006743 9.5e-211 737.3 576 64.1
Duzib264G1173 Durio zibethinus HOM05D005552 ORTHO05D006743 1.6e-210 736.5 575 62.8
Prupe.7G138000 Prunus persica HOM05D005552 ORTHO05D006743 1.6e-210 736.5 576 63.9
Ciclev10025258m.g Citrus clementina HOM05D005552 ORTHO05D006743 2.1e-210 736.1 575 62.8
Haze_15444 Corylus avellana HOM05D005552 ORTHO05D006743 2.1e-210 736.1 586 63.7
FvH4_1g15480 Fragaria vesca HOM05D005552 ORTHO05D006743 2.1e-210 736.1 576 64.1
ECA232G0422 Erigeron canadensis HOM05D005552 ORTHO05D006743 4.7e-210 734.9 576 62.0
MD15G1279300 Malus domestica HOM05D005552 ORTHO05D006743 5.2e-209 731.5 576 63.0
FAN19G0212 Fragaria x ananassa HOM05D005552 ORTHO05D006743 8.9e-209 730.7 576 63.2
RcHm_v2.0_Chr2g0104711 Rosa chinensis HOM05D005552 ORTHO05D006743 4.9e-207 724.9 576 63.2
Lsat_1_v5_gn_4_168700 Lactuca sativa HOM05D005552 ORTHO05D006743 4.1e-206 721.8 578 60.9
Aqoxy6G00889 Aquilegia oxysepala HOM05D005552 ORTHO05D006743 4.6e-205 718.4 577 62.6
CANSAT64G0631 Cannabis sativa HOM05D005552 ORTHO05D006743 2.9e-204 715.7 575 61.6
Glyma.01G183800 Glycine max HOM05D005552 ORTHO05D006743 1.5e-203 713.4 594 59.6
Psat2g165040 Pisum sativum HOM05D005552 ORTHO05D006743 2.5e-203 712.6 576 61.3
HanXRQChr14g0430701 Helianthus annuus HOM05D005552 ORTHO05D006743 9.5e-203 710.7 590 60.8
Cpa.g.sc6.396 Carica papaya HOM05D005552 ORTHO05D006743 1.2e-202 710.3 575 60.9
Glyma.11G058500 Glycine max HOM05D005552 ORTHO05D006743 1.2e-202 710.3 575 60.7
Ca_24792_v3 Cicer arietinum L. HOM05D005552 ORTHO05D006743 2.3e-201 706.1 575 60.2
Lalb_Chr05g0213171 Lupinus albus HOM05D005552 ORTHO05D006743 3.1e-201 705.7 575 61.6
Sed0018600 Sechium edule HOM05D005552 ORTHO05D006743 4.0e-201 705.3 575 60.5
TPR.G11337 Trifolium pratense HOM05D005552 ORTHO05D006743 4.0e-201 705.3 575 60.2
Hund16313 Selenicereus undatus HOM05D005552 ORTHO05D006743 5.2e-201 704.9 575 62.1
TWI09G0520 Tripterygium wilfordii HOM05D005552 ORTHO05D006743 6.8e-201 704.5 575 60.2
AUR62003843 Chenopodium quinoa HOM05D005552 ORTHO05D006743 1.2e-200 703.7 576 59.5
PGR119G0642 Punica granatum HOM05D005552 ORTHO05D006743 1.5e-200 703.4 576 61.1
AUR62001963 Chenopodium quinoa HOM05D005552 ORTHO05D006743 3.4e-200 702.2 576 59.9
MELO3C007542.2 Cucumis melo HOM05D005552 ORTHO05D006743 1.3e-199 700.3 575 59.5
Lj6g0016933 Lotus japonicus HOM05D005552 ORTHO05D006743 1.7e-199 699.9 575 60.5
Eucgr.I00976 Eucalyptus grandis HOM05D005552 ORTHO05D006743 2.9e-199 699.1 575 60.2
THA.LOC104807572 Tarenaya hassleriana HOM05D005552 ORTHO05D006743 1.4e-198 696.8 576 58.2
ClCG01G016650 Citrullus lanatus HOM05D005552 ORTHO05D006743 4.6e-197 691.8 575 59.7
PSO541G0461 Papaver somniferum HOM05D005552 ORTHO05D006743 4.6e-197 691.8 577 60.0
arahy.Tifrunner.gnm1.ann1.21BGDZ Arachis hypogaea HOM05D005552 ORTHO05D006743 1.3e-196 690.3 604 56.8
MD02G1166800 Malus domestica HOM05D005552 ORTHO05D006743 1.3e-196 690.3 569 60.1
VMungo1215G1500 Vigna mungo HOM05D005552 ORTHO05D006743 1.3e-196 690.3 575 59.7
PSO675G7200 Papaver somniferum HOM05D005552 ORTHO05D006743 3.0e-196 689.1 577 59.8
Lj2g0010083 Lotus japonicus HOM05D005552 ORTHO05D006743 3.9e-196 688.7 575 60.2
Sc16g0001610 Simmondsia chinensis HOM05D005552 ORTHO05D006743 1.5e-195 686.8 575 57.9
Medtr5g017970 Medicago truncatula HOM05D005552 ORTHO05D006743 2.3e-193 679.5 576 58.5
SGA_v2.0_scaffold36G14364 Striga asiatica HOM05D005552 ORTHO05D006743 1.3e-191 673.7 645 54.9
AT4G37190 Arabidopsis thaliana HOM05D005552 ORTHO05D006743 4.3e-187 658.7 578 57.6
Hma1.2p1_0873F.1_g231280 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 1.2e-186 657.1 517 62.7
Sp7g34600 Schrenkiella parvula HOM05D005552 ORTHO05D006743 2.1e-186 656.4 576 57.3
AL7G13990 Arabidopsis lyrata HOM05D005552 ORTHO05D006743 2.3e-185 652.9 578 56.9
Carub.0007s0338 Capsella rubella HOM05D005552 ORTHO05D006743 3.1e-185 652.5 578 56.9
CARHR245320 Cardamine hirsuta HOM05D005552 ORTHO05D006743 8.9e-185 651.0 577 57.0
arahy.Tifrunner.gnm1.ann1.A2BBUY Arachis hypogaea HOM05D005552 ORTHO05D006743 7.6e-184 647.9 575 57.0
HPP92_017765 Vanilla planifolia HOM05D005552 ORTHO05D006743 6.4e-183 644.8 575 56.0
Aa31LG6G13810 Aethionema arabicum HOM05D005552 ORTHO05D006743 8.6e-180 634.4 576 56.1
Thhalv10024834m.g Eutrema salsugineum HOM05D005552 ORTHO05D006743 3.3e-179 632.5 578 55.7
Os03g0240900 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 5.6e-179 631.7 577 54.6
CDE04G2042 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 4.0e-177 625.5 552 57.4
CsaV3_6G043060 Cucumis sativus L. HOM05D005552 ORTHO05D006743 5.2e-177 625.2 532 59.0
A03p64710 Brassica napus HOM05D005552 ORTHO05D006743 7.8e-173 611.3 575 54.8
BraA03t15535Z Brassica rapa HOM05D005552 ORTHO05D006743 7.8e-173 611.3 575 54.8
ATR0767G265 Amborella trichopoda HOM05D005552 ORTHO05D006743 2.3e-172 609.8 553 56.1
Phvul.002G021300 Phaseolus vulgaris HOM05D005552 ORTHO05D006743 2.8e-170 602.8 517 57.3
BcaNung04273 Brassica carinata HOM05D005552 ORTHO05D006743 8.1e-170 601.3 575 54.3
Zm00001eb030410 Zea mays HOM05D005552 ORTHO05D006743 1.4e-169 600.5 575 52.5
C07p62120 Brassica napus HOM05D005552 ORTHO05D006743 1.5e-168 597.0 575 53.9
BolC7t46629H Brassica oleracea HOM05D005552 ORTHO05D006743 1.5e-168 597.0 575 53.9
Manes.16G089500 Manihot esculenta HOM05D005552 ORTHO05D006743 1.7e-167 593.6 497 60.6
DCAR_010923 Daucus carota HOM05D005552 ORTHO05D006743 8.4e-167 591.3 680 47.2
Hma1.2p1_0873F.1_g231290 Hydrangea macrophylla HOM05D005552 ORTHO05D006743 3.6e-162 575.9 442 63.8
TAR628G0695 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.8e-161 573.5 429 66.7
BcaNung03946 Brassica carinata HOM05D005552 ORTHO05D006743 7.1e-158 561.6 549 52.6
Oeu035482.1 Olea europaea HOM05D005552 ORTHO05D006743 2.8e-154 549.7 393 67.4
Nn6g32078 Nelumbo nucifera HOM05D005552 ORTHO05D006743 2.5e-147 526.6 429 62.7
Gohir.A11G189700 Gossypium hirsutum HOM05D005552 ORTHO05D006743 1.3e-140 504.2 394 62.7
SEGI_18564 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 3.3e-139 499.6 557 47.6
Os12g0586400 Oryza sativa ssp. japonica HOM05D005552 ORTHO05D006743 1.1e-137 494.6 581 46.6
FvH4_5g33502 Fragaria vesca HOM05D005552 ORTHO05D006743 1.3e-135 487.6 498 54.2
CDE06G0261 Ceratophyllum demersum HOM05D005552 ORTHO05D006743 8.5e-127 458.4 463 52.7
TAR376G0305 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.4e-124 451.1 472 51.9
FAN18G3771 Fragaria x ananassa HOM05D005552 ORTHO05D006743 9.7e-123 444.9 367 62.4
Mapoly0024s0139 Marchantia polymorpha HOM05D005552 ORTHO05D006743 1.8e-121 440.7 588 40.6
Atru.chr3.424 Acer truncatum HOM05D005552 ORTHO05D006743 8.0e-117 425.2 361 59.6
SMO358G0218 Selaginella moellendorffii HOM05D005552 ORTHO05D006743 1.1e-110 404.8 579 40.6
Pp3c2_14950 Physcomitrium patens HOM05D005552 ORTHO05D006743 4.0e-108 396.4 585 37.6
HanXRQChr04g0119851 Helianthus annuus HOM05D005552 ORTHO05D006743 1.6e-104 384.4 302 61.6
FAN08G3227 Fragaria x ananassa HOM05D005552 ORTHO05D006743 5.7e-99 365.9 475 46.7
unitig_26.g9473 Utricularia gibba HOM05D005552 ORTHO05D006743 8.1e-69 265.8 244 56.1
unitig_26.g9472 Utricularia gibba HOM05D005552 ORTHO05D006743 9.6e-62 242.3 279 47.3
HanXRQChr04g0119841 Helianthus annuus HOM05D005552 ORTHO05D006743 6.2e-61 239.6 208 59.1
Atru.chr2.470 Acer truncatum HOM05D005552 ORTHO05D006743 3.8e-58 230.3 385 39.2
CBR_g38209 Chara braunii HOM05D005552 ORTHO05D006743 1.3e-50 205.3 527 27.7
Atru.chr3.423 Acer truncatum HOM05D005552 ORTHO05D006743 1.1e-49 202.2 160 61.2
arahy.Tifrunner.gnm1.ann1.ENA0P5 Arachis hypogaea HOM05D005552 ORTHO05D006743 4.9e-34 150.2 99 66.7
MCO05G662 Micromonas commoda HOM05D005552 ORTHO05D006743 4.9e-34 150.2 468 25.2
SHI23011 Sapria himalayana HOM05D005552 ORTHO05D006743 6.5e-34 149.8 152 52.6
Cre01.g043700 Chlamydomonas reinhardtii HOM05D005552 ORTHO05D006743 1.2e-32 145.6 442 26.7
Psat4g201960 Pisum sativum HOM05D005552 ORTHO05D006743 1.2e-32 145.6 170 48.8
Peaxi162Scf00073g00115 Petunia axillaris HOM05D005552 ORTHO05D006743 2.7e-32 144.4 74 89.2
Cfa026632 Carpinus fangiana HOM05D005552 ORTHO05D006743 8.2e-29 132.9 387 26.1
SHI23015 Sapria himalayana HOM05D005552 ORTHO05D006743 3.1e-28 131.0 153 42.5
arahy.Tifrunner.gnm1.ann1.S73BBB Arachis hypogaea HOM05D005552 ORTHO05D006743 5.0e-26 123.6 224 37.1
C01p02170 Brassica napus HOM05D005552 ORTHO05D006743 1.9e-25 121.7 115 53.0
BolC1t00209H Brassica oleracea HOM05D005552 ORTHO05D006743 1.9e-25 121.7 115 53.0
Psat1g136760 Pisum sativum HOM05D005552 ORTHO05D006743 6.1e-24 116.7 130 46.2
TAR376G0458 Trochodendron aralioides HOM05D005552 ORTHO05D006743 1.2e-19 102.4 73 68.5
CSS0040680 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 1.9e-17 95.1 128 43.8
Psat5g241560 Pisum sativum HOM05D005552 ORTHO05D006743 5.5e-17 93.6 89 51.7
Ah.11g041060 Amaranthus hybridus HOM05D005552 ORTHO05D006743 7.9e-16 89.7 52 78.8
CSS0023439 Camellia sinensis var. sinensis HOM05D005552 ORTHO05D006743 2.3e-15 88.2 80 56.2
SHI23016 Sapria himalayana HOM05D000105 ORTHO05D000023 4.4e-14 84.0 68 57.4
Cpa.g.sc6.394 Carica papaya HOM05D005552 ORTHO05D006743 2.8e-13 81.3 263 27.4
FvH4_5g33501 Fragaria vesca HOM05D005552 ORTHO05D006743 2.5e-09 68.2 45 68.9
SEGI_06310 Sequoiadendron giganteum HOM05D005552 ORTHO05D006743 6.1e-08 63.5 51 54.9
SHI23013 Sapria himalayana HOM05D001839 ORTHO05D001867 2.6e-06 58.2 70 41.4


User provided reference genes

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