Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 1.1e-98 363.2 182 100.0
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 1.1e-98 363.2 182 100.0
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 2.4e-96 355.5 182 97.8
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 1.4e-93 346.3 182 94.5
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 94.0
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 94.0
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 93.4
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 92.9
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 3.6e-92 341.7 182 93.4
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 92.9
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 6.1e-92 340.9 182 92.9
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 7.9e-92 340.5 182 92.9
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 92.9
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 91.8
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 92.3
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 1.4e-91 339.7 182 92.9
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 1.8e-91 339.3 182 91.8
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.3e-91 339.0 177 94.4
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 3.0e-91 338.6 182 92.3
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 91.8
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 3.9e-91 338.2 182 91.8
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 5.1e-91 337.8 182 92.3
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 5.1e-91 337.8 180 92.8
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 92.3
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 6.7e-91 337.4 182 92.9
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 6.7e-91 337.4 181 91.2
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 91.8
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 1.1e-90 336.7 182 90.7
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 91.8
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 90.7
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 90.7
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 91.8
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 1.5e-90 336.3 180 91.7
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 91.2
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 2.0e-90 335.9 178 93.3
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 91.2
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.0e-90 335.9 182 91.2
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 90.1
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 3.3e-90 335.1 182 91.2
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 3.3e-90 335.1 182 90.1
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 4.4e-90 334.7 179 92.7
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 4.4e-90 334.7 182 90.7
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 5.7e-90 334.3 181 91.2
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 90.1
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 91.2
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 7.4e-90 334.0 182 91.2
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 89.6
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 88.5
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 1.7e-89 332.8 182 89.6
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 2.2e-89 332.4 179 91.6
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 2.2e-89 332.4 182 90.7
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 2.8e-89 332.0 182 91.2
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 4.8e-89 331.3 178 92.7
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 6.3e-89 330.9 179 90.5
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.4e-88 329.7 182 89.0
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 2.4e-88 328.9 182 89.0
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 4.1e-88 328.2 182 86.8
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 9.1e-88 327.0 182 87.4
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 2.0e-87 325.9 176 91.5
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 3.5e-87 325.1 194 84.5
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 3.5e-87 325.1 178 92.1
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 4.5e-87 324.7 178 89.9
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 5.9e-87 324.3 176 90.3
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 7.7e-87 323.9 182 89.6
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 1.3e-86 323.2 202 81.7
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 1.3e-86 323.2 182 89.0
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 1.7e-86 322.8 176 90.3
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 86.8
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 2.9e-86 322.0 182 88.5
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 3.8e-86 321.6 182 89.0
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 3.8e-86 321.6 176 91.5
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 5.0e-86 321.2 172 92.4
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 5.0e-86 321.2 182 86.3
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 5.0e-86 321.2 197 83.2
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.5e-85 319.7 173 90.8
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 1.9e-85 319.3 182 88.5
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 2.5e-85 318.9 182 87.9
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 2.5e-85 318.9 173 91.3
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 3.2e-85 318.5 176 87.5
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 5.5e-85 317.8 182 87.4
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 5.5e-85 317.8 172 92.4
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 7.2e-85 317.4 182 84.6
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 2.1e-84 315.8 182 86.8
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.4e-83 313.2 182 87.4
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 1.4e-83 313.2 178 88.2
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 4.0e-83 311.6 177 88.1
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.5e-82 309.7 182 88.5
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 1.3e-81 306.6 208 77.9
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 3.7e-81 305.1 174 86.8
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 4.8e-81 304.7 173 87.3
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 6.3e-81 304.3 174 87.4
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 6.3e-81 304.3 174 87.4
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 1.1e-80 303.5 174 86.8
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.4e-80 302.4 174 86.2
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.0e-78 297.0 155 96.8
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 4.7e-76 288.1 153 90.2
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.0e-75 287.0 182 80.2
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 1.8e-75 286.2 183 81.4
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 8.8e-75 283.9 182 78.0
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 7.5e-74 280.8 155 89.7
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 1.3e-73 280.0 151 93.4
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.7e-73 279.6 177 80.2
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.8e-72 276.2 148 89.2
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 2.4e-72 275.8 155 87.7
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 9.4e-69 263.8 155 86.5
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 1.3e-65 253.4 139 87.8
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 2.8e-65 252.3 181 74.6
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 1.4e-64 250.0 184 75.0
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 9.2e-64 247.3 128 92.2
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 1.2e-63 246.9 130 92.3
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 1.0e-59 233.8 126 88.9
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 2.6e-58 229.2 184 59.8
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 2.0e-55 219.5 177 58.8
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 7.8e-55 217.6 155 74.2
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 3.3e-53 212.2 185 57.8
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.3e-51 206.1 105 95.2
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 2.0e-50 203.0 105 93.3
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 2.9e-49 199.1 105 92.4
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 4.9e-49 198.4 105 92.4
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.3e-46 190.3 101 90.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 1.4e-43 180.3 179 59.2
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 8.9e-43 177.6 100 87.0
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 4.9e-41 171.8 92 92.4
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 9.2e-40 167.5 92 89.1
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 1.2e-39 167.2 154 61.0
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.1e-39 166.4 86 93.0
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 3.6e-36 155.6 91 78.0
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 9.9e-34 147.5 127 59.1
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 1.9e-32 143.3 87 80.5
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.7e-31 139.4 92 79.3
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 8.1e-28 127.9 66 92.4
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 3.8e-25 119.0 77 81.8
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.6e-23 113.6 70 82.9
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 7.6e-18 94.7 48 89.6
Duzib093G1290 Durio zibethinus HOM05D005117 ORTHO05D005956 3.9e-14 82.4 182 30.2
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 1.6e-12 77.0 182 31.3
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 2.8e-12 76.3 58 63.8
Lalb_Chr03g0033811 Lupinus albus HOM05D005117 ORTHO05D005956 2.8e-12 76.3 182 29.7
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 2.8e-12 76.3 49 75.5
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 6.2e-12 75.1 182 30.2
PGR004G2811 Punica granatum HOM05D005117 ORTHO05D005956 1.8e-11 73.6 182 29.7
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 9.0e-11 71.2 182 28.6
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 2.0e-10 70.1 182 28.6
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 2.0e-10 70.1 182 27.5
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 3.4e-10 69.3 181 28.2
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 9.9e-10 67.8 180 31.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 1.1e-08 64.3 137 31.4
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 3.5e-07 59.3 198 23.7


User provided reference genes

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