Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g099850.3 Solanum lycopersicum HOM05D004840 ORTHO05D005751 6.2e-171 604.0 294 100.0
PGSC0003DMG400024721 Solanum tuberosum HOM05D004840 ORTHO05D005751 6.4e-168 594.0 294 98.3
Sopen01g043360 Solanum pennellii HOM05D004840 ORTHO05D005751 1.9e-167 592.4 294 98.0
CAN.G1459.23 Capsicum annuum HOM05D004840 ORTHO05D005751 1.4e-154 549.7 294 91.5
Peaxi162Scf00037g01328 Petunia axillaris HOM05D004840 ORTHO05D005751 8.4e-152 540.4 294 88.1
Nitab4.5_0002805g0130 Nicotiana tabacum HOM05D000001 ORTHO05D005751 2.3e-149 532.3 283 89.4
Nitab4.5_0000646g0310 Nicotiana tabacum HOM05D004840 ORTHO05D005751 3.2e-143 511.9 282 87.2
Nitab4.5_0003113g0130 Nicotiana tabacum HOM05D004840 ORTHO05D005751 1.5e-140 503.1 384 68.5
Dinv30826 Davidia involucrata HOM05D004840 ORTHO05D005751 7.0e-122 441.0 283 73.9
Dinv40351 Davidia involucrata HOM05D004840 ORTHO05D005751 6.5e-120 434.5 292 70.5
GSVIVG01031181001 Vitis vinifera HOM05D004840 ORTHO05D005751 8.0e-118 427.6 290 69.3
CSS0026736 Camellia sinensis var. sinensis HOM05D004840 ORTHO05D005751 2.6e-116 422.5 291 69.8
Rhsim07G0191000 Rhododendron simsii HOM05D004840 ORTHO05D005751 6.3e-115 417.9 282 70.2
Hma1.2p1_1021F.1_g248650 Hydrangea macrophylla HOM05D004840 ORTHO05D005751 9.1e-114 414.1 294 69.7
Potri.005G024200 Populus trichocarpa HOM05D004840 ORTHO05D005751 3.5e-113 412.1 294 65.3
QL03p019896 Quercus lobata HOM05D004840 ORTHO05D005751 1.0e-112 410.6 287 68.3
Cc02_g34310 Coffea canephora HOM05D004840 ORTHO05D005751 1.3e-112 410.2 265 72.1
Oeu012128.1 Olea europaea HOM05D004840 ORTHO05D005751 1.3e-112 410.2 273 70.0
Thecc.05G314300 Theobroma cacao HOM05D004840 ORTHO05D005751 3.2e-111 405.6 295 66.4
Actinidia16825 Actinidia chinensis HOM05D004840 ORTHO05D005751 7.2e-111 404.4 286 67.5
Atru.chr2.82 Acer truncatum HOM05D004840 ORTHO05D005751 1.2e-110 403.7 291 66.0
Ciclev10002011m.g Citrus clementina HOM05D004840 ORTHO05D005751 2.7e-110 402.5 291 66.0
Duzib177G0371 Durio zibethinus HOM05D004840 ORTHO05D005751 3.6e-110 402.1 273 70.3
Gorai.004G239300 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.6e-110 402.1 290 66.6
Gohir.A08G208500 Gossypium hirsutum HOM05D004840 ORTHO05D005751 6.1e-110 401.4 290 66.6
TAR636G2597 Trochodendron aralioides HOM05D004840 ORTHO05D005751 1.4e-109 400.2 284 67.3
Cpa.g.sc48.101 Carica papaya HOM05D004840 ORTHO05D005751 1.8e-109 399.8 275 66.9
Gohir.D08G225300 Gossypium hirsutum HOM05D004840 ORTHO05D005751 1.8e-109 399.8 290 66.2
Cfa006640 Carpinus fangiana HOM05D004840 ORTHO05D005751 2.3e-109 399.4 281 67.6
MSTRG.20411 Avicennia marina HOM05D004840 ORTHO05D005751 8.8e-109 397.5 282 67.0
Potri.013G014800 Populus trichocarpa HOM05D004840 ORTHO05D005751 2.6e-108 396.0 298 63.4
TWI36G0513 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.7e-108 394.8 292 64.7
TWI56G0640 Tripterygium wilfordii HOM05D004840 ORTHO05D005751 5.7e-108 394.8 272 68.4
MBI18_g24866_MAGBIO Magnolia biondii HOM05D004840 ORTHO05D005751 2.2e-107 392.9 289 65.7
SalBow7G2231 Salvia bowleyana HOM05D004840 ORTHO05D005751 3.7e-107 392.1 285 67.7
ECA236G2863 Erigeron canadensis HOM05D004840 ORTHO05D005751 1.4e-106 390.2 294 61.2
Manes.08G116500 Manihot esculenta HOM05D004840 ORTHO05D005751 4.1e-106 388.7 287 63.8
Manes.09G171500 Manihot esculenta HOM05D004840 ORTHO05D005751 5.4e-106 388.3 290 64.1
Oeu010923.1 Olea europaea HOM05D004840 ORTHO05D005751 5.4e-106 388.3 251 70.9
Nn3g21515 Nelumbo nucifera HOM05D004840 ORTHO05D005751 7.0e-106 387.9 289 63.7
HanXRQChr11g0339841 Helianthus annuus HOM05D004840 ORTHO05D005751 9.2e-106 387.5 278 63.3
Sabra05G0029600 Salix brachista HOM05D004840 ORTHO05D005751 5.9e-105 384.8 294 61.6
TAR365G1036 Trochodendron aralioides HOM05D004840 ORTHO05D005751 2.3e-104 382.9 286 65.0
CiPaw.07G022700 Carya illinoinensis HOM05D004840 ORTHO05D005751 3.8e-104 382.1 279 64.2
Sc09g0002890 Simmondsia chinensis HOM05D004840 ORTHO05D005751 6.6e-104 381.3 284 62.3
CANSAT54G0531 Cannabis sativa HOM05D004840 ORTHO05D005751 1.5e-103 380.2 287 62.7
SGA_v2.0_scaffold172G38964 Striga asiatica HOM05D004840 ORTHO05D005751 1.5e-103 380.2 290 64.5
Aqoxy5G00762 Aquilegia oxysepala HOM05D004840 ORTHO05D005751 1.9e-103 379.8 270 65.9
DCAR_003366 Daucus carota HOM05D004840 ORTHO05D005751 5.6e-103 378.3 276 63.4
Lsat_1_v5_gn_7_74220 Lactuca sativa HOM05D004840 ORTHO05D005751 9.5e-103 377.5 284 62.0
TPR.G17703 Trifolium pratense HOM05D004840 ORTHO05D005751 9.5e-103 377.5 289 60.9
MD04G1198500 Malus domestica HOM05D004840 ORTHO05D005751 2.8e-102 375.9 285 62.5
Ah.06g189880 Amaranthus hybridus HOM05D004840 ORTHO05D005751 4.7e-102 375.2 294 62.2
Sabra13G0012700 Salix brachista HOM05D004840 ORTHO05D005751 1.4e-101 373.6 284 63.4
Phvul.007G197800 Phaseolus vulgaris HOM05D004840 ORTHO05D005751 3.0e-101 372.5 285 61.1
RcHm_v2.0_Chr3g0456161 Rosa chinensis HOM05D004840 ORTHO05D005751 4.0e-101 372.1 284 62.3
FAN09G4274 Fragaria x ananassa HOM05D004840 ORTHO05D005751 5.2e-101 371.7 284 62.3
Medtr1g083450 Medicago truncatula HOM05D004840 ORTHO05D005751 8.9e-101 370.9 293 58.7
Hund21718 Selenicereus undatus HOM05D004840 ORTHO05D005751 8.9e-101 370.9 287 61.7
FvH4_6g06800 Fragaria vesca HOM05D004840 ORTHO05D005751 3.4e-100 369.0 293 59.7
Prupe.6G319500 Prunus persica HOM05D004840 ORTHO05D005751 7.5e-100 367.9 288 62.2
VMungo0720G2003 Vigna mungo HOM05D004840 ORTHO05D005751 9.8e-100 367.5 278 62.2
FAN09G2143 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.7e-99 366.7 264 64.4
Lj5A372G14 Lonicera japonica HOM05D004840 ORTHO05D005751 3.7e-99 365.5 232 71.6
arahy.Tifrunner.gnm1.ann1.GZI5BF Arachis hypogaea HOM05D004840 ORTHO05D005751 6.4e-99 364.8 275 61.8
Lalb_Chr02g0148061 Lupinus albus HOM05D004840 ORTHO05D005751 8.3e-99 364.4 277 59.9
FAN02G2387 Fragaria x ananassa HOM05D004840 ORTHO05D005751 1.1e-98 364.0 264 64.0
Psat6g150960 Pisum sativum HOM05D004840 ORTHO05D005751 1.1e-98 364.0 292 58.6
CsaV3_2G006680 Cucumis sativus L. HOM05D004840 ORTHO05D005751 1.4e-98 363.6 284 61.6
ClCG02G015400 Citrullus lanatus HOM05D004840 ORTHO05D005751 1.8e-98 363.2 268 64.2
Sed0004465 Sechium edule HOM05D004840 ORTHO05D005751 1.8e-98 363.2 286 60.1
Ca_10143_v3 Cicer arietinum L. HOM05D004840 ORTHO05D005751 2.4e-98 362.8 286 59.4
MELO3C004220.2 Cucumis melo HOM05D004840 ORTHO05D005751 2.4e-98 362.8 289 60.6
PSO210G5227 Papaver somniferum HOM05D004840 ORTHO05D005751 3.2e-98 362.5 284 61.3
Lj5g0001629 Lotus japonicus HOM05D004840 ORTHO05D005751 5.4e-98 361.7 271 61.6
Haze_04127 Corylus avellana HOM05D004840 ORTHO05D005751 9.2e-98 360.9 235 69.8
COL.COLO4_10535 Corchorus olitorius HOM05D004840 ORTHO05D005751 7.8e-97 357.8 245 68.2
EL10Ac4g09901 Beta vulgaris HOM05D004840 ORTHO05D005751 7.3e-95 351.3 296 57.1
Glyma.10G150900 Glycine max HOM05D004840 ORTHO05D005751 2.8e-94 349.4 253 61.7
ATR0796G269 Amborella trichopoda HOM05D004840 ORTHO05D005751 8.0e-94 347.8 264 61.7
arahy.Tifrunner.gnm1.ann1.X9MLMM Arachis hypogaea HOM05D004840 ORTHO05D005751 2.0e-92 343.2 301 55.8
HPP92_010680 Vanilla planifolia HOM05D004840 ORTHO05D005751 2.9e-91 339.3 260 61.2
Os02g0592500 Oryza sativa ssp. japonica HOM05D004840 ORTHO05D005751 2.4e-90 336.3 261 59.4
PGR031G0640 Punica granatum HOM05D004840 ORTHO05D005751 4.1e-90 335.5 266 58.6
CDE02G2578 Ceratophyllum demersum HOM05D004840 ORTHO05D005751 2.7e-89 332.8 276 59.1
Zm00001eb183580 Zea mays HOM05D004840 ORTHO05D005751 1.3e-88 330.5 281 55.2
Gohir.D08G225400 Gossypium hirsutum HOM05D004840 ORTHO05D005751 2.3e-88 329.7 249 64.7
SHI18096 Sapria himalayana HOM05D004840 ORTHO05D005751 4.3e-87 325.5 256 58.6
Migut.B01018 Erythranthe guttata HOM05D004840 ORTHO05D005751 6.2e-86 321.6 278 57.6
Eucgr.H04546 Eucalyptus grandis HOM05D004840 ORTHO05D005751 2.3e-85 319.7 284 55.6
AUR62000745 Chenopodium quinoa HOM05D004840 ORTHO05D005751 3.2e-82 309.3 233 63.5
SEGI_16961 Sequoiadendron giganteum HOM05D004840 ORTHO05D005751 1.3e-80 303.9 273 51.3
AUR62005219 Chenopodium quinoa HOM05D004840 ORTHO05D005751 2.8e-78 296.2 257 57.6
unitig_37.g12625 Utricularia gibba HOM05D004840 ORTHO05D005751 1.3e-72 277.3 266 50.0
AT5G27830 Arabidopsis thaliana HOM05D004840 ORTHO05D005751 3.3e-71 272.7 275 48.4
Sp2g20950 Schrenkiella parvula HOM05D004840 ORTHO05D005751 7.3e-71 271.6 266 48.5
BcaC04g23645 Brassica carinata HOM05D004840 ORTHO05D005751 2.8e-70 269.6 266 47.7
C09p05910 Brassica napus HOM05D004840 ORTHO05D005751 2.8e-70 269.6 266 47.7
A09p05450 Brassica napus HOM05D004840 ORTHO05D005751 4.7e-70 268.9 266 48.1
AL6G39110 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 1.8e-69 266.9 281 47.0
Gorai.004G239400 Gossypium raimondii HOM05D004840 ORTHO05D005751 3.1e-69 266.2 218 61.9
BcaB04g19688 Brassica carinata HOM05D004840 ORTHO05D005751 1.2e-68 264.2 256 47.7
C07p41150 Brassica napus HOM05D004840 ORTHO05D005751 1.5e-68 263.8 273 46.5
Carub.0006s2475 Capsella rubella HOM05D004840 ORTHO05D005751 1.5e-68 263.8 266 47.4
BolC9t53517H Brassica oleracea HOM05D004840 ORTHO05D005751 2.0e-68 263.5 273 46.9
BraA09t36183Z Brassica rapa HOM05D004840 ORTHO05D005751 2.6e-68 263.1 274 47.1
A06p37310 Brassica napus HOM05D004840 ORTHO05D005751 5.8e-68 261.9 268 46.6
BolC7t44643H Brassica oleracea HOM05D004840 ORTHO05D005751 1.7e-67 260.4 277 46.2
Thhalv10004669m.g Eutrema salsugineum HOM05D004840 ORTHO05D005751 1.7e-67 260.4 267 47.2
THA.LOC104821728 Tarenaya hassleriana HOM05D004840 ORTHO05D005751 2.2e-67 260.0 276 47.5
CARHR186320 Cardamine hirsuta HOM05D004840 ORTHO05D005751 1.6e-65 253.8 270 47.0
BcaNung04748 Brassica carinata HOM05D004840 ORTHO05D005751 6.0e-65 251.9 255 46.7
Aa31LG11G9580 Aethionema arabicum HOM05D004840 ORTHO05D005751 2.3e-64 250.0 251 46.6
Glyma.20G237300 Glycine max HOM05D004840 ORTHO05D005751 2.3e-64 250.0 275 47.3
Mapoly0073s0083 Marchantia polymorpha HOM05D004840 ORTHO05D005751 2.0e-60 236.9 235 46.4
CARHR079990 Cardamine hirsuta HOM05D004840 ORTHO05D005751 5.5e-50 202.2 250 40.0
CBR_g12354 Chara braunii HOM05D004840 ORTHO05D005751 2.7e-49 199.9 280 38.9
CARHR080000 Cardamine hirsuta HOM05D004840 ORTHO05D005751 3.3e-47 193.0 197 46.2
Sp3g04440 Schrenkiella parvula HOM05D004840 ORTHO05D005751 3.3e-47 193.0 239 42.3
SMO351G0431 Selaginella moellendorffii HOM05D004840 ORTHO05D005751 2.8e-46 189.9 275 36.7
AL3G16200 Arabidopsis lyrata HOM05D004840 ORTHO05D005751 2.5e-42 176.8 224 40.2
BcaC09g47836 Brassica carinata HOM05D004840 ORTHO05D005751 6.7e-40 168.7 254 39.4
BolC1t05686H Brassica oleracea HOM05D004840 ORTHO05D005751 1.1e-39 167.9 175 46.9
BcaC09g47835 Brassica carinata HOM05D004840 ORTHO05D005751 9.6e-39 164.9 221 40.7
BraA01t04479Z Brassica rapa HOM05D004840 ORTHO05D005751 1.3e-38 164.5 179 44.7
BcaC09g47832 Brassica carinata HOM05D004840 ORTHO05D005751 1.1e-37 161.4 175 46.9
BolC5t34822H Brassica oleracea HOM05D004840 ORTHO05D005751 2.4e-37 160.2 201 43.3
BcaB04g21445 Brassica carinata HOM05D004840 ORTHO05D005751 3.1e-37 159.8 187 46.0
BcaC05g30108 Brassica carinata HOM05D004840 ORTHO05D005751 6.9e-37 158.7 201 41.8
BcaB04g21439 Brassica carinata HOM05D004840 ORTHO05D005751 5.9e-36 155.6 197 44.2
C05p61640 Brassica napus HOM05D004840 ORTHO05D005751 7.6e-36 155.2 201 40.8
BraA01t03309Z Brassica rapa HOM05D004840 ORTHO05D005751 7.6e-36 155.2 250 38.0
BolC1t05687H Brassica oleracea HOM05D004840 ORTHO05D005751 2.2e-35 153.7 277 36.1
A01p31830 Brassica napus HOM05D004840 ORTHO05D005751 1.0e-32 144.8 137 49.6
BraA01t04480Z Brassica rapa HOM05D004840 ORTHO05D005751 1.6e-30 137.5 150 45.3
BraA01t03307Z Brassica rapa HOM05D004840 ORTHO05D005751 1.1e-29 134.8 137 48.9
Actinidia35548 Actinidia chinensis HOM05D004840 ORTHO05D005751 5.3e-29 132.5 88 71.6
CARHR182590 Cardamine hirsuta HOM05D004840 ORTHO05D005751 7.7e-28 128.6 103 51.5
BcaC09g47833 Brassica carinata HOM05D004840 ORTHO05D005751 7.2e-26 122.1 175 39.4
BcaC09g47834 Brassica carinata HOM05D004840 ORTHO05D005751 7.2e-26 122.1 175 39.4
PRCOL_00005226 Prasinoderma coloniale HOM05D004840 ORTHO05D005751 7.9e-25 118.6 185 36.2
MCO15G505 Micromonas commoda HOM05D004840 ORTHO05D005751 7.4e-23 112.1 193 36.3
Nitab4.5_0007800g0020 Nicotiana tabacum HOM05D004840 ORTHO05D005751 2.8e-22 110.2 72 79.2
RcHm_v2.0_Chr2g0123281 Rosa chinensis HOM05D004840 ORTHO05D005751 1.2e-17 94.7 93 51.6
BraA05t22958Z Brassica rapa HOM05D004840 ORTHO05D005751 4.4e-15 86.3 115 40.9
Duzib128G0694 Durio zibethinus HOM05D004840 ORTHO05D005751 9.7e-15 85.1 93 48.4
BcaC03g13846 Brassica carinata HOM05D004840 ORTHO05D005751 1.3e-14 84.7 62 54.8
BolC2t07120H Brassica oleracea HOM05D004840 ORTHO05D005751 1.3e-14 84.7 62 54.8
Cre06.g258000 Chlamydomonas reinhardtii HOM05D004840 ORTHO05D005751 6.7e-08 62.4 151 27.2


User provided reference genes

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