Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 4.5e-182 641.7 496 100.0
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 6.1e-179 631.3 496 99.0
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 9.5e-172 607.4 496 90.3
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 3.7e-160 568.9 502 85.9
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 2.4e-143 513.1 495 72.3
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 3.2e-143 512.7 500 68.2
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 1.6e-142 510.4 497 72.8
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 3.6e-110 402.9 499 51.9
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 4.1e-106 389.4 487 50.9
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.0e-105 387.1 298 70.5
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.5e-104 382.1 290 71.4
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 1.1e-103 381.3 295 70.2
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.5e-103 379.0 298 69.5
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.2e-102 377.9 299 68.9
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.2e-102 377.9 299 68.9
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-102 377.5 299 68.6
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.7e-102 376.7 491 50.1
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 2.3e-101 373.6 492 49.6
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 3.0e-101 373.2 299 68.2
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 3.3e-100 369.8 299 66.9
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 4.4e-100 369.4 304 66.1
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 7.4e-100 368.6 299 67.9
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 2.4e-98 363.6 298 67.1
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 4.1e-98 362.8 302 65.6
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.2e-97 361.3 299 66.6
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.3e-96 357.8 498 47.2
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 1.7e-96 357.5 499 45.9
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.2e-96 357.1 301 65.4
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 3.8e-96 356.3 486 47.9
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.9e-95 354.0 277 70.0
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.5e-95 353.6 490 47.6
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 2.1e-94 350.5 300 67.7
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 3.9e-93 346.3 497 46.1
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.1e-92 344.7 302 65.9
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 4.4e-92 342.8 475 48.2
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 8.2e-91 338.6 500 45.4
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 2.4e-90 337.0 302 61.9
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.2e-89 334.7 274 67.2
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.2e-88 330.5 277 65.3
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.9e-88 330.1 308 62.7
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 3.8e-88 329.7 307 61.2
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.8e-88 329.7 307 61.2
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 6.5e-88 328.9 273 66.3
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 8.5e-88 328.6 266 68.0
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.1e-87 328.2 277 65.7
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.5e-87 327.8 503 44.3
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.5e-87 327.8 303 59.4
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.9e-87 327.4 295 63.7
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.5e-87 327.0 297 62.0
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 2.5e-87 327.0 305 63.9
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.2e-87 325.5 297 61.6
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 9.4e-87 325.1 314 62.7
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 9.4e-87 325.1 315 61.3
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 1.6e-86 324.3 513 46.0
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 2.1e-86 323.9 304 62.5
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 3.6e-86 323.2 314 61.8
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 6.1e-86 322.4 299 62.9
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 8.0e-86 322.0 268 65.3
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.3e-85 320.5 530 43.0
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 4.0e-85 319.7 298 62.4
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.2e-84 318.2 307 60.9
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-84 318.2 504 43.8
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.6e-84 317.0 307 61.2
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 7.5e-84 315.5 306 61.1
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 9.7e-84 315.1 303 62.0
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.3e-83 314.7 309 60.2
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.3e-83 314.7 292 60.6
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 1.7e-83 314.3 488 45.3
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.7e-83 314.3 307 59.6
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 2.8e-83 313.5 304 61.5
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 3.7e-83 313.2 377 50.7
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.1e-82 311.6 326 58.6
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 1.1e-82 311.6 303 63.0
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 2.0e-81 307.4 313 58.8
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 2.0e-81 307.4 469 45.8
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 5.9e-81 305.8 312 58.7
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.3e-80 304.7 285 58.9
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 8.5e-80 302.0 306 57.8
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 1.9e-79 300.8 302 61.3
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 3.2e-79 300.1 300 58.3
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 5.5e-79 299.3 307 59.3
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 1.6e-78 297.7 303 56.8
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 2.1e-78 297.4 293 58.7
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.7e-78 297.0 322 57.1
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 8.0e-78 295.4 287 58.2
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 2.3e-77 293.9 319 56.7
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 3.0e-77 293.5 326 55.2
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 5.2e-77 292.7 274 60.2
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 8.8e-77 292.0 312 57.4
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.2e-76 291.6 311 57.2
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 3.4e-76 290.0 506 45.1
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 6.3e-75 285.8 275 60.7
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 1.1e-74 285.0 294 57.1
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.4e-74 284.6 275 60.0
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 3.1e-74 283.5 316 56.3
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 3.1e-74 283.5 315 55.9
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 5.4e-74 282.7 304 57.2
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 9.1e-74 282.0 495 51.7
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 4.5e-73 279.6 310 56.5
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 4.5e-73 279.6 310 56.5
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 1.3e-72 278.1 503 42.5
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 8.6e-72 275.4 311 56.3
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 5.5e-71 272.7 295 57.3
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 5.5e-71 272.7 258 63.2
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 7.2e-71 272.3 274 59.1
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 7.5e-68 262.3 300 55.7
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 9.8e-68 261.9 305 53.8
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.2e-65 255.0 283 54.1
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 2.7e-65 253.8 291 55.3
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.7e-64 251.1 258 53.1
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.1e-63 248.4 244 59.4
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.1e-63 248.4 302 54.3
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 8.3e-59 232.3 300 52.0
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 2.0e-57 227.6 282 51.1
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 2.3e-56 224.2 352 47.2
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 3.0e-56 223.8 260 54.6
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 2.1e-54 217.6 308 51.9
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.1e-53 215.3 275 49.8
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 8.9e-53 212.2 267 51.3
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 6.0e-49 199.5 214 57.5
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.7e-48 198.0 367 37.6
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 5.0e-48 196.4 286 46.2
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 1.5e-47 194.9 261 47.5
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 4.3e-47 193.4 208 56.2
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 8.3e-43 179.1 132 73.5
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 8.1e-38 162.5 171 57.9
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 5.4e-34 149.8 223 49.3
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 2.1e-33 147.9 194 51.5
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.4e-29 135.2 101 70.3
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.9e-27 127.5 78 84.6
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 3.5e-25 120.6 247 38.9
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 7.8e-25 119.4 297 36.4
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 1.3e-22 112.1 78 75.6
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.6e-20 104.4 70 72.9
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 9.9e-20 102.4 82 69.5
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 6.4e-19 99.8 77 64.9
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.1e-18 99.0 179 46.9
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.4e-18 98.6 303 31.4
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 9.3e-18 95.9 67 70.1
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-17 95.5 67 68.7
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 2.3e-16 91.3 267 36.0
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.0e-16 90.9 59 74.6
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.3e-15 87.4 56 76.8
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 1.4e-13 82.0 118 44.9
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.4e-13 82.0 332 30.7
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.3e-11 75.5 98 48.0
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 1.6e-06 58.5 112 41.1
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 8.2e-06 56.2 39 74.4


User provided reference genes

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