Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g099130.3 Solanum lycopersicum HOM05D006420 ORTHO05D008009 9.1e-153 543.5 269 100.0
Sopen01g042690 Solanum pennellii HOM05D006420 ORTHO05D008009 2.2e-151 538.9 269 99.3
PGSC0003DMG400024687 Solanum tuberosum HOM05D006420 ORTHO05D008009 2.7e-149 531.9 269 97.4
Nitab4.5_0000137g0140 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.8e-140 502.7 269 91.1
CAN.G1034.41 Capsicum annuum HOM05D006420 ORTHO05D008009 9.8e-131 470.3 270 87.4
Peaxi162Scf00037g00513 Petunia axillaris HOM05D006420 ORTHO05D008009 2.5e-126 455.7 269 84.4
Nitab4.5_0005541g0070 Nicotiana tabacum HOM05D006420 ORTHO05D008009 1.0e-119 433.7 269 81.4
Lj9A86G16 Lonicera japonica HOM05D006420 ORTHO05D008009 3.3e-102 375.6 273 68.5
Lj9A85G78 Lonicera japonica HOM05D006420 ORTHO05D008009 5.6e-102 374.8 272 67.6
Dinv23938 Davidia involucrata HOM05D006420 ORTHO05D008009 3.6e-101 372.1 280 66.8
GSVIVG01000081001 Vitis vinifera HOM05D006420 ORTHO05D008009 1.1e-100 370.5 269 68.0
Actinidia05697 Actinidia chinensis HOM05D006420 ORTHO05D008009 1.8e-100 369.8 271 67.5
CSS0034260 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 3.1e-100 369.0 270 67.0
Cc02_g33350 Coffea canephora HOM05D006420 ORTHO05D008009 3.1e-100 369.0 227 78.4
CSS0037657 Camellia sinensis var. sinensis HOM05D006420 ORTHO05D008009 2.0e-99 366.3 270 66.7
COL.COLO4_13456 Corchorus olitorius HOM05D006420 ORTHO05D008009 4.5e-99 365.2 272 68.4
Gohir.D08G227700 Gossypium hirsutum HOM05D006420 ORTHO05D008009 1.9e-97 359.8 272 67.3
Gorai.004G241900 Gossypium raimondii HOM05D006420 ORTHO05D008009 1.9e-97 359.8 272 67.3
Gohir.A08G210900 Gossypium hirsutum HOM05D006420 ORTHO05D008009 9.3e-97 357.5 272 66.9
Hma1.2p1_0928F.1_g237740 Hydrangea macrophylla HOM05D006420 ORTHO05D008009 2.1e-96 356.3 271 65.7
Thecc.05G302400 Theobroma cacao HOM05D006420 ORTHO05D008009 2.1e-96 356.3 232 75.0
Duzib177G0348 Durio zibethinus HOM05D006420 ORTHO05D008009 4.6e-96 355.1 271 66.4
MSTRG.5100 Avicennia marina HOM05D006420 ORTHO05D008009 7.9e-96 354.4 276 66.7
PGR083G0891 Punica granatum HOM05D006420 ORTHO05D008009 7.9e-96 354.4 270 65.2
Manes.08G120400 Manihot esculenta HOM05D006420 ORTHO05D008009 1.8e-95 353.2 272 64.3
Oeu010909.1 Olea europaea HOM05D006420 ORTHO05D008009 2.3e-95 352.8 273 65.2
AUR62000819 Chenopodium quinoa HOM05D006420 ORTHO05D008009 8.7e-95 350.9 272 66.5
RhsimUnG0226900 Rhododendron simsii HOM05D006420 ORTHO05D008009 1.1e-94 350.5 260 66.9
TAR636G1821 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.1e-94 350.5 284 64.1
Hund21694 Selenicereus undatus HOM05D006420 ORTHO05D008009 3.3e-94 349.0 273 66.3
TAR365G0270 Trochodendron aralioides HOM05D006420 ORTHO05D008009 1.3e-93 347.1 281 65.8
CANSAT54G1557 Cannabis sativa HOM05D006420 ORTHO05D008009 6.2e-93 344.7 271 64.6
Psat6g150480 Pisum sativum HOM05D006420 ORTHO05D008009 1.8e-92 343.2 269 65.4
Aqoxy5G00493 Aquilegia oxysepala HOM05D006420 ORTHO05D008009 3.1e-92 342.4 272 62.1
EL10Ac4g09358 Beta vulgaris HOM05D006420 ORTHO05D008009 3.1e-92 342.4 269 65.4
AUR62005152 Chenopodium quinoa HOM05D006420 ORTHO05D008009 3.1e-92 342.4 282 63.8
Prupe.6G324800 Prunus persica HOM05D006420 ORTHO05D008009 9.0e-92 340.9 278 61.5
Lsat_1_v5_gn_9_123421 Lactuca sativa HOM05D006420 ORTHO05D008009 1.2e-91 340.5 264 64.4
Cpa.g.sc48.61 Carica papaya HOM05D006420 ORTHO05D008009 2.6e-91 339.3 272 62.5
Ca_10114_v3 Cicer arietinum L. HOM05D006420 ORTHO05D008009 7.6e-91 337.8 225 72.9
THA.LOC104820863 Tarenaya hassleriana HOM05D006420 ORTHO05D008009 7.6e-91 337.8 271 63.8
Lalb_Chr21g0310681 Lupinus albus HOM05D006420 ORTHO05D008009 9.9e-91 337.4 267 64.8
Nn1g02269 Nelumbo nucifera HOM05D006420 ORTHO05D008009 4.9e-90 335.1 279 60.9
MD12G1218500 Malus domestica HOM05D006420 ORTHO05D008009 6.4e-90 334.7 271 62.7
Cfa006594 Carpinus fangiana HOM05D006420 ORTHO05D008009 8.4e-90 334.3 224 70.5
Glyma.10G154000 Glycine max HOM05D006420 ORTHO05D008009 8.4e-90 334.3 266 62.4
Sed0005627 Sechium edule HOM05D006420 ORTHO05D008009 8.4e-90 334.3 278 63.7
Nn4g26277 Nelumbo nucifera HOM05D006420 ORTHO05D008009 1.9e-89 333.2 228 70.6
Atru.chr2.393 Acer truncatum HOM05D006420 ORTHO05D008009 2.4e-89 332.8 269 63.2
MD04G1204800 Malus domestica HOM05D006420 ORTHO05D008009 2.4e-89 332.8 270 63.0
DCAR_029409 Daucus carota HOM05D006420 ORTHO05D008009 4.2e-89 332.0 224 69.6
Glyma.20G234300 Glycine max HOM05D006420 ORTHO05D008009 4.2e-89 332.0 266 63.5
Phvul.007G179700 Phaseolus vulgaris HOM05D006420 ORTHO05D008009 4.2e-89 332.0 267 63.3
Migut.N01987 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.2e-88 330.5 260 65.8
Migut.N02012 Erythranthe guttata HOM05D006420 ORTHO05D008009 1.2e-88 330.5 260 65.8
Cfa006595 Carpinus fangiana HOM05D006420 ORTHO05D008009 1.6e-88 330.1 224 69.6
CiPaw.07G020700 Carya illinoinensis HOM05D006420 ORTHO05D008009 2.1e-88 329.7 224 71.0
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 3.5e-88 328.9 237 69.2
VMungo0720G1765 Vigna mungo HOM05D006420 ORTHO05D008009 3.5e-88 328.9 267 62.9
Ah.04g160290 Amaranthus hybridus HOM05D006420 ORTHO05D008009 6.0e-88 328.2 228 69.7
arahy.Tifrunner.gnm1.ann1.GHU2GX Arachis hypogaea HOM05D006420 ORTHO05D008009 6.0e-88 328.2 223 71.3
Duzib106G1877 Durio zibethinus HOM05D006420 ORTHO05D008009 1.0e-87 327.4 224 71.9
vmacro05011 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.0e-87 327.4 224 71.4
ClCG02G015760 Citrullus lanatus HOM05D006420 ORTHO05D008009 3.9e-87 325.5 276 60.9
Ciclev10002177m.g Citrus clementina HOM05D006420 ORTHO05D008009 3.9e-87 325.5 269 61.3
Lj5g0015213 Lotus japonicus HOM05D006420 ORTHO05D008009 3.9e-87 325.5 226 69.9
CsaV3_2G005340 Cucumis sativus L. HOM05D006420 ORTHO05D008009 5.1e-87 325.1 279 60.6
RcHm_v2.0_Chr3g0454981 Rosa chinensis HOM05D006420 ORTHO05D008009 5.1e-87 325.1 281 60.1
arahy.Tifrunner.gnm1.ann1.7ESY4D Arachis hypogaea HOM05D006420 ORTHO05D008009 8.7e-87 324.3 223 70.4
FAN14G2531 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.1e-86 323.9 283 58.7
Medtr1g082950 Medicago truncatula HOM05D006420 ORTHO05D008009 1.5e-86 323.6 225 70.2
Sc06g0003280 Simmondsia chinensis HOM05D006420 ORTHO05D008009 5.6e-86 321.6 224 69.6
PSO210G7816 Papaver somniferum HOM05D006420 ORTHO05D008009 1.6e-85 320.1 275 59.6
FvH4_6g06020 Fragaria vesca HOM05D006420 ORTHO05D008009 4.8e-85 318.5 236 65.7
FAN09G3808 Fragaria x ananassa HOM05D006420 ORTHO05D008009 6.2e-85 318.2 278 58.3
BcaC06g31763 Brassica carinata HOM05D006420 ORTHO05D008009 1.4e-84 317.0 270 58.5
ATR0332G062 Amborella trichopoda HOM05D006420 ORTHO05D008009 2.0e-83 313.2 272 56.6
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 3.4e-83 312.4 270 58.1
FAN05G3282 Fragaria x ananassa HOM05D006420 ORTHO05D008009 4.5e-83 312.0 278 58.3
Thhalv10023646m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 5.8e-83 311.6 272 60.3
FAN02G2504 Fragaria x ananassa HOM05D006420 ORTHO05D008009 7.6e-83 311.2 233 65.7
QL03p007116 Quercus lobata HOM05D006420 ORTHO05D008009 2.2e-82 309.7 276 59.1
HPP92_020377 Vanilla planifolia HOM05D006420 ORTHO05D008009 2.9e-82 309.3 266 60.2
A03p68650 Brassica napus HOM05D006420 ORTHO05D008009 3.8e-82 308.9 230 65.2
BraSC39t46193Z Brassica rapa HOM05D006420 ORTHO05D008009 3.8e-82 308.9 230 65.2
FAN05G1000 Fragaria x ananassa HOM05D006420 ORTHO05D008009 1.4e-81 307.0 289 56.7
BcaC02g10755 Brassica carinata HOM05D006420 ORTHO05D008009 7.1e-81 304.7 270 57.0
C04p25420 Brassica napus HOM05D006420 ORTHO05D008009 7.1e-81 304.7 270 57.0
BolC4t24060H Brassica oleracea HOM05D006420 ORTHO05D008009 7.1e-81 304.7 270 57.0
TWI56G0424 Tripterygium wilfordii HOM05D006420 ORTHO05D008009 6.0e-80 301.6 274 58.8
CARHR287540 Cardamine hirsuta HOM05D006420 ORTHO05D008009 3.9e-79 298.9 221 67.9
Carub.0002s0818 Capsella rubella HOM05D006420 ORTHO05D008009 1.3e-77 293.9 221 65.2
Haze_04190 Corylus avellana HOM05D006420 ORTHO05D008009 3.1e-76 289.3 323 48.6
SpUn0004_0090 Schrenkiella parvula HOM05D006420 ORTHO05D008009 3.1e-76 289.3 221 65.2
MBI04_g29616_MAGBIO Magnolia biondii HOM05D006420 ORTHO05D008009 4.1e-76 288.9 186 71.0
Potri.013G021600 Populus trichocarpa HOM05D006420 ORTHO05D008009 4.1e-76 288.9 241 60.6
AL1G65580 Arabidopsis lyrata HOM05D006420 ORTHO05D008009 9.0e-76 287.7 223 64.6
AT1G55000 Arabidopsis thaliana HOM05D006420 ORTHO05D008009 1.2e-75 287.3 221 64.7
HanXRQChr16g0524621 Helianthus annuus HOM05D006420 ORTHO05D008009 5.5e-73 278.5 218 63.3
ECA232G4325 Erigeron canadensis HOM05D006420 ORTHO05D008009 7.2e-73 278.1 221 63.3
Sabra13G0024000 Salix brachista HOM05D006420 ORTHO05D008009 4.6e-72 275.4 241 57.3
SGA_v2.0_scaffold81G26063 Striga asiatica HOM05D006420 ORTHO05D000105 3.0e-71 272.7 470 38.1
MELO3C004253.2 Cucumis melo HOM05D000208 ORTHO05D000130 3.3e-70 269.2 225 62.2
Zm00001eb054020 Zea mays HOM05D006420 ORTHO05D008009 1.2e-64 250.8 208 55.8
Os03g0699600 Oryza sativa ssp. japonica HOM05D006420 ORTHO05D008009 1.6e-64 250.4 208 55.3
Pp3c16_5370 Physcomitrium patens HOM05D006420 ORTHO05D008009 1.6e-56 223.8 210 53.3
Potri.005G032100 Populus trichocarpa HOM05D006420 ORTHO05D008009 3.8e-50 202.6 163 61.3
CDE02G2742 Ceratophyllum demersum HOM05D006420 ORTHO05D008009 1.1e-49 201.1 173 58.4
AagrBONN_evm.TU.Sc2ySwM_368.542 Anthoceros agrestis HOM05D006420 ORTHO05D008009 4.2e-49 199.1 211 47.4
SMO356G0643 Selaginella moellendorffii HOM05D006420 ORTHO05D008009 4.7e-48 195.7 209 47.8
Rhsim07G0185100 Rhododendron simsii HOM05D006420 ORTHO05D008009 4.0e-47 192.6 125 74.4
MD10G1167700 Malus domestica HOM05D006420 ORTHO05D008009 1.7e-42 177.2 117 71.8
Eucgr.B01949 Eucalyptus grandis HOM05D006420 ORTHO05D008009 4.0e-39 166.0 107 72.9
Eucgr.B01946 Eucalyptus grandis HOM05D006420 ORTHO05D008009 2.6e-38 163.3 104 73.1
Eucgr.B01859 Eucalyptus grandis HOM05D006420 ORTHO05D008009 1.7e-37 160.6 107 71.0
QL03p007970 Quercus lobata HOM05D006420 ORTHO05D008009 2.9e-34 149.8 115 65.2
QL03p007144 Quercus lobata HOM05D006420 ORTHO05D008009 2.5e-33 146.7 116 65.5
vmacro23281 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 1.0e-31 141.4 98 68.4
Sabra05G0034600 Salix brachista HOM05D006420 ORTHO05D008009 5.2e-31 139.0 129 55.0
Cre16.g667100 Chlamydomonas reinhardtii HOM05D006420 ORTHO05D008009 1.0e-23 114.8 237 32.1
SEGI_28170 Sequoiadendron giganteum HOM05D006420 ORTHO05D008009 3.7e-21 106.3 83 62.7
vmacro23282 Vaccinium macrocarpon HOM05D006420 ORTHO05D008009 3.1e-15 86.7 102 51.0
QL03p007137 Quercus lobata HOM05D006420 ORTHO05D008009 7.5e-14 82.0 74 58.1
QL03p007977 Quercus lobata HOM05D006420 ORTHO05D008009 7.5e-14 82.0 74 58.1
Thhalv10024156m.g Eutrema salsugineum HOM05D006420 ORTHO05D008009 4.7e-08 62.8 84 44.0
GSVIVG01012047001 Vitis vinifera HOM05D002624 ORTHO05D002796 2.0e-06 57.4 101 32.7


User provided reference genes

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