Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 4.2e-131 471.5 254 100.0
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.9e-99 366.3 480 51.9
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.2e-95 352.8 265 78.9
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 1.4e-89 333.6 254 78.7
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 2.2e-84 316.2 298 66.8
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 2.7e-82 309.3 485 46.8
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 2.2e-68 263.1 486 42.6
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 5.8e-48 195.3 173 62.4
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 2.2e-47 193.4 175 59.4
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 1.2e-45 187.6 183 54.6
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.3e-44 184.1 135 66.7
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 3.0e-44 183.0 135 66.7
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 3.6e-42 176.0 182 56.6
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 1.2e-40 171.0 175 57.1
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 3.4e-40 169.5 174 50.6
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 9.8e-40 167.9 179 52.5
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.3e-39 167.5 167 55.7
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 2.2e-39 166.8 118 67.8
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 4.9e-39 165.6 138 61.6
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 4.9e-39 165.6 177 52.0
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 6.4e-39 165.2 174 51.1
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 8.3e-39 164.9 167 53.3
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.9e-38 163.7 176 56.2
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 2.1e-37 160.2 123 65.0
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 3.5e-37 159.5 175 51.4
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 6.0e-37 158.7 177 52.0
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.0e-36 157.9 133 57.9
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.0e-36 157.9 123 67.5
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.0e-36 157.9 123 67.5
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.7e-36 157.1 188 47.9
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 3.9e-36 156.0 171 53.2
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 5.1e-36 155.6 185 51.9
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 6.6e-36 155.2 168 50.0
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 8.6e-36 154.8 169 52.7
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 8.6e-36 154.8 169 52.7
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 8.6e-36 154.8 169 52.7
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 8.6e-36 154.8 128 59.4
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 5.6e-35 152.1 181 47.0
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 7.3e-35 151.8 186 50.0
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 7.3e-35 151.8 171 49.7
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 2.1e-34 150.2 181 47.0
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 2.1e-34 150.2 179 47.5
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 4.7e-34 149.1 175 50.3
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 1.4e-33 147.5 116 64.7
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.8e-33 147.1 168 48.2
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 3.1e-33 146.4 129 58.1
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 4.0e-33 146.0 169 52.7
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 4.0e-33 146.0 182 50.5
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 4.0e-33 146.0 176 47.7
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 6.8e-33 145.2 188 46.8
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 6.8e-33 145.2 171 50.3
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.9e-33 144.8 133 54.9
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 1.2e-32 144.4 147 52.4
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 1.2e-32 144.4 147 52.4
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 1.5e-32 144.1 121 60.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 2.6e-32 143.3 174 48.3
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 2.6e-32 143.3 102 67.6
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 4.4e-32 142.5 176 50.6
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 7.6e-32 141.7 169 50.3
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 4.9e-31 139.0 176 46.6
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 6.4e-31 138.7 132 47.7
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 1.4e-30 137.5 170 48.8
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.9e-30 137.1 115 58.3
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 2.4e-30 136.7 178 44.4
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 9.2e-30 134.8 128 53.9
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 9.2e-30 134.8 179 40.8
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 1.2e-29 134.4 178 43.8
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 1.6e-29 134.0 176 44.9
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 1.6e-29 134.0 174 44.8
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 2.7e-29 133.3 175 44.6
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 6.0e-29 132.1 116 57.8
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.3e-28 131.0 115 56.5
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 1.7e-28 130.6 177 48.6
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 5.1e-28 129.0 181 44.2
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 8.6e-28 128.3 170 48.2
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.9e-27 127.1 113 57.5
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 1.9e-27 127.1 121 52.9
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 5.6e-27 125.6 176 43.2
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 7.3e-27 125.2 172 44.8
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.2e-26 124.4 190 43.2
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 3.6e-26 122.9 168 47.0
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 4.7e-26 122.5 175 46.9
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 4.7e-26 122.5 175 46.9
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 8.1e-26 121.7 102 56.9
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 2.4e-25 120.2 108 51.9
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 4.0e-25 119.4 111 53.2
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 5.2e-25 119.0 107 53.3
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 6.9e-25 118.6 146 45.2
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 5.8e-24 115.5 110 51.8
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 7.6e-24 115.2 110 51.8
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 1.3e-23 114.4 113 49.6
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 2.9e-23 113.2 128 46.1
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 3.8e-23 112.8 105 53.3
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 8.4e-23 111.7 113 49.6
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 5.4e-22 109.0 121 47.1
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.6e-21 107.5 82 63.4
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 1.5e-19 100.9 126 46.8
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.3e-18 97.8 106 48.1
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 1.2e-16 91.3 147 34.0
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.5e-16 90.9 79 58.2
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.3e-15 87.8 87 64.4
Oeu051834.1 Olea europaea HOM05D006774 ORTHO05D008411 1.9e-14 84.0 86 70.9
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.2e-13 81.3 104 57.7
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.6e-10 70.9 108 48.1
RhsimUnG0226800 Rhododendron simsii HOM05D006774 ORTHO05D008411 3.6e-10 69.7 86 58.1
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 8.1e-10 68.6 116 33.6
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 8.1e-10 68.6 86 50.0
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 5.3e-09 65.9 78 64.1
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.6e-08 63.5 55 56.4
vmacro05012 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 4.5e-08 62.8 85 58.8
vmacro23280 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 9.9e-08 61.6 85 57.6
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 6.4e-07 58.9 82 45.1
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 1.9e-06 57.4 117 33.3
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 5.5e-06 55.8 79 60.8
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 7.1e-06 55.5 107 35.5


User provided reference genes

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