Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 0.0e+00 2060.0 1089 100.0
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 0.0e+00 1944.9 1092 94.0
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 0.0e+00 1873.2 1090 90.3
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 0.0e+00 1514.6 1096 75.8
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 0.0e+00 1284.6 1144 66.2
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 0.0e+00 1190.6 1136 63.0
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 0.0e+00 1173.3 1138 62.5
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 1.6e-139 501.5 1100 35.8
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 6.1e-131 473.0 1099 34.6
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.4e-130 471.9 648 44.4
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 2.7e-126 457.6 1099 34.3
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 7.5e-121 439.5 614 43.0
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 2.0e-118 431.4 527 46.7
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 1.1e-116 425.6 825 38.3
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 7.5e-113 412.9 819 37.9
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 1.1e-108 399.1 1112 30.8
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 2.5e-108 397.9 1120 33.0
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 7.3e-108 396.4 1163 32.2
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 2.1e-107 394.8 1131 31.5
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 4.7e-107 393.7 1126 33.6
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 1.1e-106 392.5 1105 31.9
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 1.4e-106 392.1 1113 32.2
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 1.2e-105 389.0 1078 32.7
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.3e-104 385.6 1118 33.4
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 2.9e-104 384.4 1090 31.7
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 2.9e-104 384.4 1109 31.5
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 8.4e-104 382.9 1112 33.3
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 1.1e-103 382.5 1107 32.6
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.1e-103 382.5 1117 32.8
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 3.2e-103 380.9 1111 30.7
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 5.4e-103 380.2 1139 31.2
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 7.8e-102 376.3 1232 32.5
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 1.1e-100 372.5 1127 32.0
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 9.6e-100 369.4 1116 32.7
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 1.2e-99 369.0 1120 32.9
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 1.2e-99 369.0 692 38.2
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 1.6e-99 368.6 1111 30.2
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 2.1e-99 368.2 625 37.1
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 2.8e-99 367.9 799 34.4
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 6.2e-99 366.7 1124 32.5
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.0e-97 361.7 1132 32.3
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 3.8e-96 357.5 1101 30.7
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 6.4e-96 356.7 1143 29.3
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.7e-93 348.6 594 39.1
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 2.3e-93 348.2 804 33.0
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 5.1e-93 347.1 1106 29.9
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 1.1e-92 345.9 1120 31.2
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 6.9e-90 336.7 1096 30.4
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 2.6e-89 334.7 1112 29.9
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.9e-88 331.3 1088 31.5
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.0e-85 322.8 1111 31.1
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.0e-85 322.8 1149 29.2
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 6.6e-85 320.1 1109 31.1
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.1e-84 319.3 1095 29.0
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.5e-84 318.9 670 34.2
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 4.3e-84 317.4 771 32.9
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 6.9e-82 310.1 548 36.3
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 2.0e-81 308.5 1124 30.2
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 4.5e-81 307.4 1095 31.1
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 1.3e-80 305.8 885 31.4
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 1.6e-78 298.9 512 36.9
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 1.6e-78 298.9 749 31.4
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 2.3e-77 295.0 486 37.2
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.5e-76 292.4 1099 28.4
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 3.3e-76 291.2 1140 28.8
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 1.6e-75 288.9 553 35.4
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.7e-75 287.7 648 31.9
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 4.8e-75 287.3 564 33.3
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 3.1e-74 284.6 620 33.1
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 4.0e-74 284.3 781 31.1
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 5.3e-74 283.9 532 35.0
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 1.2e-73 282.7 512 37.9
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 2.6e-73 281.6 848 29.7
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 3.4e-73 281.2 826 31.0
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 4.9e-72 277.3 812 30.8
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 6.5e-72 276.9 1146 27.0
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 5.5e-71 273.9 1134 28.5
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 7.1e-71 273.5 689 31.3
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 1.2e-70 272.7 1089 27.5
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 1.6e-70 272.3 678 31.1
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 2.1e-70 271.9 669 31.2
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 3.9e-69 267.7 870 30.3
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 2.1e-67 261.9 808 30.0
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 7.9e-62 243.4 779 27.9
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 7.9e-62 243.4 835 28.3
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 5.1e-61 240.7 703 28.9
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 8.7e-61 240.0 764 28.4
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 1.3e-59 236.1 838 27.9
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 2.2e-59 235.3 387 34.4
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 3.7e-59 234.6 683 28.8
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 4.1e-58 231.1 694 28.7
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 2.6e-57 228.4 943 26.8
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 4.5e-57 227.6 694 28.7
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 1.0e-56 226.5 772 27.7
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.3e-56 226.1 387 33.3
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 2.3e-53 215.3 826 28.0
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 8.8e-53 213.4 374 33.7
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 1.1e-50 206.5 566 30.7
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 3.4e-49 201.4 390 36.4
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 1.1e-44 186.4 545 28.8
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 1.5e-44 186.0 183 48.1
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 5.2e-37 161.0 376 31.1
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 8.8e-37 160.2 377 31.3
Lj9A29T9 Lonicera japonica HOM05D006048 ORTHO05D007642 7.5e-36 157.1 324 34.3
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 1.1e-34 153.3 888 25.3
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 2.0e-33 149.1 239 32.6
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 3.8e-32 144.8 830 25.9
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 3.8e-32 144.8 176 42.6
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 8.0e-30 137.1 297 33.0
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 1.8e-29 136.0 247 32.0
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 2.6e-28 132.1 225 36.0
Lj9A18T10 Lonicera japonica HOM05D006048 ORTHO05D007642 4.8e-27 127.9 833 25.7
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 3.5e-25 121.7 287 32.1
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 5.4e-18 97.8 76 52.6
Actinidia01443 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.0e-18 97.4 127 38.6
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 7.8e-09 67.4 245 26.5
MBI12_g31451_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 2.3e-08 65.9 98 35.7
Atru.chr2.431 Acer truncatum HOM05D006048 ORTHO05D007642 4.3e-07 61.6 123 37.4


User provided reference genes

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