Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 3.1e-218 761.5 393 100.0
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 4.2e-215 751.1 396 98.2
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 5.1e-213 744.2 390 97.9
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 5.2e-205 717.6 390 94.1
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.3e-200 703.0 383 94.8
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 1.8e-197 692.6 385 92.7
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 1.4e-181 639.8 385 84.2
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.8e-181 639.4 384 85.2
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 2.2e-179 632.5 385 83.1
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 8.3e-179 630.6 384 84.1
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 2.0e-177 625.9 385 82.9
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.7e-176 622.9 385 81.8
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.1e-175 620.2 383 82.0
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 2.1e-174 615.9 385 82.1
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.3e-171 606.7 385 79.0
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 1.9e-170 602.8 385 79.5
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.7e-168 596.3 385 79.2
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.3e-168 595.9 385 79.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 2.3e-168 595.9 383 78.9
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 1.5e-167 593.2 385 79.0
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 1.8e-165 586.3 385 76.9
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 3.1e-165 585.5 385 77.7
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 1.2e-164 583.6 385 77.9
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 3.4e-164 582.0 384 76.6
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 3.4e-164 582.0 386 76.9
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 7.5e-164 580.9 383 76.5
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 4.9e-163 578.2 384 77.1
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 1.4e-162 576.6 380 77.6
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 4.1e-162 575.1 383 76.8
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.2e-161 573.5 384 76.3
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.5e-161 572.0 384 75.8
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 3.0e-160 568.9 385 75.1
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 5.1e-160 568.2 384 75.5
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 1.1e-159 567.0 385 76.4
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 2.5e-159 565.8 387 73.6
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 1.6e-158 563.1 383 73.1
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.1e-158 562.8 385 73.8
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 3.6e-158 562.0 388 74.0
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 3.6e-158 562.0 382 73.6
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 4.7e-158 561.6 385 73.5
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 6.2e-158 561.2 385 73.8
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 1.4e-157 560.1 385 75.1
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.8e-157 559.7 384 74.5
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 1.8e-157 559.7 383 73.6
CSS0041428 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 4.0e-157 558.5 383 76.5
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 8.9e-157 557.4 402 72.4
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-156 557.0 383 76.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-156 557.0 383 76.0
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 1.2e-156 557.0 384 74.7
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 2.6e-156 555.8 383 73.6
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 3.4e-156 555.4 388 71.9
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 9.9e-156 553.9 391 72.1
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 1.7e-155 553.1 383 77.3
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 2.2e-155 552.7 385 73.0
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 3.8e-155 552.0 387 73.4
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 7.1e-154 547.7 388 72.4
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 9.2e-154 547.4 385 72.7
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 1.6e-153 546.6 383 71.8
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.6e-153 546.6 388 70.9
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 4.6e-153 545.0 388 72.7
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 6.0e-153 544.7 385 71.9
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 3.0e-152 542.3 385 71.7
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 3.9e-152 542.0 383 72.6
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 8.6e-152 540.8 350 78.9
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 1.5e-151 540.0 384 71.9
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 3.3e-151 538.9 387 72.6
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 8.1e-150 534.3 386 71.8
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.1e-149 532.3 393 69.7
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 4.0e-149 531.9 387 70.8
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 6.9e-149 531.2 384 71.1
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 1.5e-148 530.0 387 70.8
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.6e-148 529.3 385 70.4
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.2e-147 526.2 385 70.4
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 3.8e-147 525.4 389 71.2
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 7.1e-146 521.2 395 68.9
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.6e-145 520.0 388 69.3
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 4.6e-145 518.5 410 67.1
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 7.8e-145 517.7 385 70.1
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 8.7e-144 514.2 365 74.2
FAN02G3565 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.1e-143 513.8 417 65.5
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 1.5e-143 513.5 386 68.9
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.5e-143 513.5 348 75.9
FAN14G1612 Fragaria x ananassa HOM05D004239 ORTHO05D005191 2.5e-143 512.7 417 65.0
FAN05G0638 Fragaria x ananassa HOM05D004239 ORTHO05D005191 7.3e-143 511.1 417 65.2
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 9.6e-143 510.8 384 69.3
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 2.1e-142 509.6 386 69.2
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 6.2e-142 508.1 384 68.8
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 6.2e-142 508.1 384 68.8
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 1.1e-141 507.3 349 72.8
FAN09G3705 Fragaria x ananassa HOM05D004239 ORTHO05D005191 1.8e-141 506.5 417 64.7
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 2.4e-141 506.1 385 69.1
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 5.3e-141 505.0 385 68.8
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 2.6e-140 502.7 387 68.2
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 7.6e-140 501.1 385 65.5
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 9.9e-140 500.7 389 67.6
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 1.7e-139 500.0 383 68.9
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 2.2e-139 499.6 386 68.4
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 3.8e-139 498.8 385 67.8
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 4.9e-139 498.4 386 68.1
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 4.2e-138 495.4 385 68.3
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 9.3e-138 494.2 385 67.5
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 9.3e-138 494.2 348 73.0
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 2.7e-137 492.7 385 67.8
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 4.6e-137 491.9 383 66.1
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 1.8e-136 490.0 387 64.6
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 3.9e-136 488.8 385 67.3
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 5.1e-136 488.4 383 65.5
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 8.7e-136 487.6 383 65.5
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 9.6e-135 484.2 385 66.8
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 3.4e-132 475.7 330 70.9
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 4.9e-131 471.9 380 66.3
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 1.5e-127 460.3 399 62.2
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 2.5e-127 459.5 384 64.1
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 5.6e-127 458.4 385 64.4
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 1.1e-122 444.1 388 60.3
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.4e-122 443.7 399 60.4
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.4e-122 443.7 388 61.1
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 2.7e-121 439.5 396 60.4
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 3.9e-120 435.6 377 61.5
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 7.9e-113 411.4 391 56.8
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 3.7e-110 402.5 385 57.1
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 3.9e-104 382.5 385 55.8
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 3.1e-101 372.9 297 61.3
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 1.0e-99 367.9 270 70.0
Pp3c22_490 Physcomitrium patens HOM05D004239 ORTHO05D005191 6.7e-96 355.1 417 49.9
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 3.8e-91 339.3 437 45.1
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.7e-88 328.6 226 72.1
RcHm_v2.0_Chr7g0220931 Rosa chinensis HOM05D004239 ORTHO05D005191 4.5e-84 315.8 297 59.9
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 1.7e-83 313.9 368 49.2
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 2.5e-82 310.1 264 59.5
SMO347G0436 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 2.0e-71 273.9 384 42.2
CSS0049885 Camellia sinensis var. sinensis HOM05D004239 ORTHO05D005191 6.8e-64 248.8 176 74.4
CBR_g3053 Chara braunii HOM05D004239 ORTHO05D005191 2.3e-59 233.8 462 34.4
Nitab4.5_0000327g0030 Nicotiana tabacum HOM05D004239 ORTHO05D005191 3.6e-57 226.5 142 84.5
Cfa007056 Carpinus fangiana HOM05D004239 ORTHO05D005191 3.6e-49 199.9 152 73.7
SMO167G0025 Selaginella moellendorffii HOM05D004239 ORTHO05D005191 4.7e-49 199.5 242 46.7
vmacro05023 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.6e-43 179.1 173 59.5
RcHm_v2.0_Chr3g0454481 Rosa chinensis HOM05D004239 ORTHO05D005191 2.6e-39 167.2 125 68.8
Cfa027123 Carpinus fangiana HOM05D004239 ORTHO05D005191 1.9e-37 161.0 396 32.3
Lj5A557G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.2e-33 148.3 151 57.6
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 1.7e-30 137.9 177 46.9
Lj5A557T20 Lonicera japonica HOM05D004239 ORTHO05D005191 2.2e-30 137.5 155 53.5
Lj5A555G9 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-28 131.3 138 57.2
RcHm_v2.0_Chr7g0220941 Rosa chinensis HOM05D004239 ORTHO05D005191 3.5e-28 130.2 86 75.6
Actinidia05710 Actinidia chinensis HOM05D004239 ORTHO05D005191 2.5e-26 124.0 75 78.7
COL.COLO4_16926 Corchorus olitorius HOM05D004239 ORTHO05D005191 7.3e-26 122.5 108 58.3
Lj5A556G14 Lonicera japonica HOM05D004239 ORTHO05D005191 8.1e-25 119.0 120 57.5
AagrBONN_evm.TU.Sc2ySwM_117.3520 Anthoceros agrestis HOM05D004239 ORTHO05D005191 4.9e-22 109.8 212 37.7
Lj5A558T16 Lonicera japonica HOM05D004239 ORTHO05D005191 2.1e-20 104.4 126 54.8
Lj5A552G14 Lonicera japonica HOM05D004239 ORTHO05D005191 3.5e-20 103.6 84 60.7
Lj5A558T15 Lonicera japonica HOM05D004239 ORTHO05D005191 4.6e-20 103.2 82 61.0
Lj5A549T14 Lonicera japonica HOM05D004239 ORTHO05D005191 1.3e-19 101.7 126 54.0
Lsat_1_v5_gn_7_76161 Lactuca sativa HOM05D004239 ORTHO05D005191 2.1e-17 94.4 75 64.0
Lj5A550T6 Lonicera japonica HOM05D004239 ORTHO05D005191 5.3e-16 89.7 125 49.6
Zm00001eb252600 Zea mays HOM05D004239 ORTHO05D005191 2.2e-14 84.3 106 49.1
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 2.9e-14 84.0 82 52.4
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.2e-12 78.6 44 90.9
COL.COLO4_16925 Corchorus olitorius HOM05D004239 ORTHO05D005191 6.0e-12 76.3 51 66.7
Zm00001eb313220 Zea mays HOM05D004239 ORTHO05D005191 6.0e-12 76.3 94 47.9
arahy.Tifrunner.gnm1.ann1.04YHM3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.3e-11 75.1 101 48.5
Oeu038248.1 Olea europaea HOM05D004239 ORTHO05D288322 1.8e-11 74.7 59 67.8
Potri.015G125201 Populus trichocarpa HOM05D004239 ORTHO05D005191 3.3e-10 70.5 51 60.8
RcHm_v2.0_Chr3g0454471 Rosa chinensis HOM05D004239 ORTHO05D005191 1.4e-08 65.1 36 88.9
Zm00001eb342830 Zea mays HOM05D004239 ORTHO05D005191 4.0e-08 63.5 38 84.2
Zm00001eb019540 Zea mays HOM05D000931 ORTHO05D001924 1.5e-07 61.6 38 81.6
Zm00001eb406200 Zea mays HOM05D004239 ORTHO05D005191 7.6e-07 59.3 80 46.2
TPR.G33192 Trifolium pratense HOM05D004239 ORTHO05D410682 2.2e-06 57.8 78 46.2


User provided reference genes

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