Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098830.3 Solanum lycopersicum HOM05D006625 ORTHO05D008060 1.7e-159 565.8 270 100.0
Sopen01g042370 Solanum pennellii HOM05D006625 ORTHO05D008060 4.2e-158 561.2 270 98.9
PGSC0003DMG400028585 Solanum tuberosum HOM05D006625 ORTHO05D008060 3.5e-152 541.6 270 95.2
Nitab4.5_0005388g0010 Nicotiana tabacum HOM05D006625 ORTHO05D008060 2.1e-136 489.2 270 85.6
Nitab4.5_0002031g0060 Nicotiana tabacum HOM05D006625 ORTHO05D008060 1.2e-133 479.9 284 81.7
Peaxi162Scf00037g00234 Petunia axillaris HOM05D006625 ORTHO05D008060 1.5e-123 446.4 280 76.4
Dinv40271 Davidia involucrata HOM05D006625 ORTHO05D008060 1.1e-102 377.1 260 66.5
Hma1.2p1_0617F.1_g190230 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 4.5e-99 365.2 253 65.6
CSS0023168 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.2e-96 357.1 273 62.3
Cc00_g15580 Coffea canephora HOM05D006625 ORTHO05D008060 3.5e-96 355.5 255 64.7
GSVIVG01000035001 Vitis vinifera HOM05D006625 ORTHO05D008060 1.3e-95 353.6 260 64.2
Actinidia19797 Actinidia chinensis HOM05D006625 ORTHO05D008060 1.8e-95 353.2 270 62.6
MSTRG.28006 Avicennia marina HOM05D006625 ORTHO05D008060 1.9e-94 349.7 256 63.3
Manes.09G165400 Manihot esculenta HOM05D006625 ORTHO05D008060 1.9e-94 349.7 255 63.9
Potri.005G035600 Populus trichocarpa HOM05D006625 ORTHO05D008060 1.1e-92 344.0 257 61.9
vmacro19631 Vaccinium macrocarpon HOM05D006625 ORTHO05D008060 3.1e-92 342.4 269 61.7
Ciclev10002145m.g Citrus clementina HOM05D006625 ORTHO05D008060 5.3e-92 341.7 269 58.4
Cfa006572 Carpinus fangiana HOM05D006625 ORTHO05D008060 1.2e-91 340.5 267 59.2
QL03p005837 Quercus lobata HOM05D006625 ORTHO05D008060 7.6e-91 337.8 257 61.5
TAR362G1087 Trochodendron aralioides HOM05D006625 ORTHO05D008060 3.2e-89 332.4 261 60.9
Lsat_1_v5_gn_2_64300 Lactuca sativa HOM05D006625 ORTHO05D008060 7.1e-89 331.3 251 59.8
Sc16g0008430 Simmondsia chinensis HOM05D006625 ORTHO05D008060 2.1e-88 329.7 253 58.9
HanXRQChr10g0295051 Helianthus annuus HOM05D006625 ORTHO05D008060 6.1e-88 328.2 248 59.3
CiPaw.07G016100 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.8e-87 326.6 272 57.4
Prupe.6G327800 Prunus persica HOM05D006625 ORTHO05D008060 2.3e-87 326.2 259 60.2
SGA_v2.0_scaffold81G26083 Striga asiatica HOM05D006625 ORTHO05D008060 3.0e-87 325.9 270 57.8
Duzib106G0694 Durio zibethinus HOM05D006625 ORTHO05D008060 5.1e-87 325.1 259 60.6
Hund07059 Selenicereus undatus HOM05D006625 ORTHO05D008060 1.1e-86 323.9 269 57.2
Glyma.20G232800 Glycine max HOM05D006625 ORTHO05D008060 7.4e-86 321.2 254 59.8
ECA238G3785 Erigeron canadensis HOM05D006625 ORTHO05D008060 1.6e-85 320.1 250 59.6
Sabra05G0036200 Salix brachista HOM05D006625 ORTHO05D008060 1.6e-85 320.1 285 54.7
Lj5g0018133 Lotus japonicus HOM05D006625 ORTHO05D008060 2.2e-85 319.7 264 57.6
Cpa.g.sc48.33 Carica papaya HOM05D006625 ORTHO05D008060 6.3e-85 318.2 265 55.5
arahy.Tifrunner.gnm1.ann1.A4Z4CH Arachis hypogaea HOM05D006625 ORTHO05D008060 1.8e-84 316.6 253 58.1
arahy.Tifrunner.gnm1.ann1.P1SK02 Arachis hypogaea HOM05D006625 ORTHO05D008060 2.4e-84 316.2 253 57.7
Psat6g149480 Pisum sativum HOM05D006625 ORTHO05D008060 2.4e-84 316.2 253 59.3
Oeu043355.5 Olea europaea HOM05D006625 ORTHO05D008060 3.1e-84 315.8 235 62.6
Thecc.05G305300 Theobroma cacao HOM05D006625 ORTHO05D008060 3.1e-84 315.8 272 55.5
Lalb_Chr21g0310751 Lupinus albus HOM05D006625 ORTHO05D008060 6.9e-84 314.7 253 59.3
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 6.9e-84 314.7 267 54.7
COL.COLO4_13497 Corchorus olitorius HOM05D006625 ORTHO05D008060 1.5e-83 313.5 254 57.9
Medtr1g082740 Medicago truncatula HOM05D006625 ORTHO05D008060 1.5e-83 313.5 269 58.0
Ca_10103_v3 Cicer arietinum L. HOM05D006625 ORTHO05D008060 2.0e-83 313.2 253 58.5
CANSAT54G0428 Cannabis sativa HOM05D006625 ORTHO05D008060 5.9e-83 311.6 259 56.4
Migut.N01952 Erythranthe guttata HOM05D006625 ORTHO05D008060 1.3e-82 310.5 252 56.7
FAN05G0213 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.7e-82 310.1 250 58.8
FAN09G2049 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.7e-82 310.1 250 58.8
Glyma.10G155500 Glycine max HOM05D006625 ORTHO05D008060 1.7e-82 310.1 254 57.5
FAN14G5181 Fragaria x ananassa HOM05D001310 ORTHO05D008060 2.9e-82 309.3 250 58.8
FvH4_6g05630 Fragaria vesca HOM05D006625 ORTHO05D008060 8.5e-82 307.8 250 57.6
DCAR_029427 Daucus carota HOM05D006625 ORTHO05D008060 1.1e-81 307.4 260 55.0
FAN14G5649 Fragaria x ananassa HOM05D001310 ORTHO05D008060 1.1e-81 307.4 250 58.4
Rhsim05G0143100 Rhododendron simsii HOM05D006625 ORTHO05D008060 1.4e-81 307.0 233 60.1
RcHm_v2.0_Chr3g0454381 Rosa chinensis HOM05D006625 ORTHO05D008060 1.9e-81 306.6 258 56.2
VMungo0720G0027 Vigna mungo HOM05D006625 ORTHO05D008060 9.4e-81 304.3 263 54.4
Lj5A9T24 Lonicera japonica HOM05D006625 ORTHO05D008060 2.1e-80 303.1 241 61.4
TPR.G6108 Trifolium pratense HOM05D006625 ORTHO05D008060 2.1e-80 303.1 255 57.6
MD04G1207100 Malus domestica HOM05D006625 ORTHO05D008060 4.6e-80 302.0 278 54.7
Lj5A588T22 Lonicera japonica HOM05D006625 ORTHO05D008060 6.1e-80 301.6 240 61.2
THA.LOC104821879 Tarenaya hassleriana HOM05D006625 ORTHO05D008060 1.8e-79 300.1 255 53.7
Lj5A588T21 Lonicera japonica HOM05D006625 ORTHO05D008060 5.1e-79 298.5 240 60.8
TWI56G0867 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 6.7e-79 298.1 266 54.5
AL3G15690 Arabidopsis lyrata HOM05D006625 ORTHO05D008060 8.8e-79 297.7 270 54.1
Gorai.007G001300 Gossypium raimondii HOM05D006625 ORTHO05D008060 1.3e-77 293.9 259 54.8
Nn4g26222 Nelumbo nucifera HOM05D006625 ORTHO05D008060 1.3e-77 293.9 260 53.5
Lj5A576T32 Lonicera japonica HOM05D006625 ORTHO05D008060 1.7e-77 293.5 240 60.4
Aa31LG5G15780 Aethionema arabicum HOM05D006625 ORTHO05D008060 2.8e-77 292.7 261 54.0
ClCG02G015910 Citrullus lanatus HOM05D006625 ORTHO05D008060 2.8e-77 292.7 259 52.5
Eucgr.H04479 Eucalyptus grandis HOM05D006625 ORTHO05D008060 2.8e-77 292.7 257 54.9
CsaV3_2G005130 Cucumis sativus L. HOM05D006625 ORTHO05D008060 1.4e-76 290.4 257 52.9
Gohir.D11G000400 Gossypium hirsutum HOM05D006625 ORTHO05D008060 1.8e-76 290.0 259 54.1
Lj5A11T18 Lonicera japonica HOM05D006625 ORTHO05D008060 9.1e-76 287.7 235 60.4
Carub.0003s0450 Capsella rubella HOM05D006625 ORTHO05D008060 1.2e-75 287.3 271 51.7
Aqoxy2G03295 Aquilegia oxysepala HOM05D006625 ORTHO05D008060 1.5e-75 287.0 251 51.8
Thhalv10021312m.g Eutrema salsugineum HOM05D006625 ORTHO05D008060 1.5e-75 287.0 257 52.9
C05p61940 Brassica napus HOM05D006625 ORTHO05D008060 4.5e-75 285.4 269 53.2
Phvul.007G181000 Phaseolus vulgaris HOM05D006625 ORTHO05D008060 7.7e-75 284.6 254 53.1
BcaC05g30013 Brassica carinata HOM05D006625 ORTHO05D008060 1.3e-74 283.9 259 54.8
BolC5t34854H Brassica oleracea HOM05D006625 ORTHO05D008060 1.7e-74 283.5 269 52.8
BraA05t23018Z Brassica rapa HOM05D006625 ORTHO05D008060 2.9e-74 282.7 258 54.3
A05p42330 Brassica napus HOM05D006625 ORTHO05D008060 6.5e-74 281.6 258 53.9
PGR031G0551 Punica granatum HOM05D006625 ORTHO05D008060 6.5e-74 281.6 258 51.2
Sp3g04100 Schrenkiella parvula HOM05D006625 ORTHO05D008060 3.2e-73 279.3 256 51.2
BcaC05g30142 Brassica carinata HOM05D006625 ORTHO05D008060 7.2e-73 278.1 260 54.2
EL10Ac4g09338 Beta vulgaris HOM05D006625 ORTHO05D008060 6.1e-72 275.0 253 52.2
Haze_04209 Corylus avellana HOM05D006625 ORTHO05D008060 3.0e-71 272.7 237 56.1
TWI77G0294 Tripterygium wilfordii HOM05D006625 ORTHO05D008060 5.1e-71 271.9 217 58.5
FAN02G3749 Fragaria x ananassa HOM05D006625 ORTHO05D008060 6.7e-71 271.6 230 56.5
PSO339G1258 Papaver somniferum HOM05D006625 ORTHO05D008060 2.2e-69 266.5 268 48.5
Rhsim05G0144100 Rhododendron simsii HOM05D006625 ORTHO05D008060 3.7e-69 265.8 273 49.8
CDE11G1261 Ceratophyllum demersum HOM05D006625 ORTHO05D008060 1.2e-67 260.8 213 53.1
Sed0016985 Sechium edule HOM05D006625 ORTHO05D008060 1.2e-67 260.8 255 49.4
Gohir.A11G000800 Gossypium hirsutum HOM05D006625 ORTHO05D008060 4.7e-64 248.8 237 52.7
ATR0626G410 Amborella trichopoda HOM05D006625 ORTHO05D008060 8.2e-61 238.0 258 47.3
CiPaw.07G016300 Carya illinoinensis HOM05D006625 ORTHO05D008060 1.4e-60 237.3 241 50.6
PSO801G0350 Papaver somniferum HOM05D000048 ORTHO05D000207 5.3e-60 235.3 198 53.0
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.1e-56 223.4 259 44.8
MELO3C004279.2 Cucumis melo HOM05D006625 ORTHO05D008060 1.4e-52 210.7 155 60.0
Zm00001eb212380 Zea mays HOM05D006625 ORTHO05D008060 1.0e-50 204.5 218 45.0
AUR62005130 Chenopodium quinoa HOM05D006625 ORTHO05D008060 1.7e-50 203.8 173 59.0
QL03p006436 Quercus lobata HOM05D006625 ORTHO05D008060 8.5e-50 201.4 140 63.6
AT3G05250 Arabidopsis thaliana HOM05D006625 ORTHO05D008060 3.2e-49 199.5 208 49.0
CARHR079590 Cardamine hirsuta HOM05D006625 ORTHO05D008060 1.5e-46 190.7 232 42.7
Lj5A1T18 Lonicera japonica HOM05D006625 ORTHO05D008060 2.8e-45 186.4 241 43.2
Lj5A1T20 Lonicera japonica HOM05D006625 ORTHO05D008060 2.4e-44 183.3 241 44.4
COL.COLO4_10909 Corchorus olitorius HOM05D006625 ORTHO05D008060 8.6e-42 174.9 250 40.8
AUR62000843 Chenopodium quinoa HOM05D006625 ORTHO05D008060 2.8e-40 169.9 246 41.1
MBI19_g05826_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 7.0e-36 155.2 206 42.2
MD12G1221000 Malus domestica HOM05D006625 ORTHO05D008060 5.9e-35 152.1 133 55.6
Lj5A11T17 Lonicera japonica HOM05D006625 ORTHO05D008060 1.3e-34 151.0 124 60.5
Mapoly0224s0007 Marchantia polymorpha HOM05D006625 ORTHO05D008060 1.2e-32 144.4 233 34.8
SEGI_37357 Sequoiadendron giganteum HOM05D006625 ORTHO05D008060 1.0e-31 141.4 191 37.7
AagrBONN_evm.TU.Sc2ySwM_362.2578 Anthoceros agrestis HOM05D006625 ORTHO05D008060 1.7e-29 134.0 242 33.9
Hma1.2p1_0617F.1_g190240 Hydrangea macrophylla HOM05D006625 ORTHO05D008060 2.9e-29 133.3 103 60.2
Os03g0809800 Oryza sativa ssp. japonica HOM05D006625 ORTHO05D008060 5.4e-28 129.0 152 43.4
BolC3t17028H Brassica oleracea HOM05D006625 ORTHO05D008060 2.0e-27 127.1 215 33.0
FAN05G4155 Fragaria x ananassa HOM05D001310 ORTHO05D001283 2.3e-26 123.6 114 52.6
Lj5A10T21 Lonicera japonica HOM05D006625 ORTHO05D008060 2.3e-26 123.6 109 56.9
Lj5A18T33 Lonicera japonica HOM05D006625 ORTHO05D008060 6.6e-26 122.1 107 57.0
Atru.chr2.446 Acer truncatum HOM05D000091 ORTHO05D009985 5.6e-25 119.0 77 64.9
Pp3c3_27350 Physcomitrium patens HOM05D006625 ORTHO05D008060 1.8e-23 114.0 244 29.9
MBI19_g05827_MAGBIO Magnolia biondii HOM05D006625 ORTHO05D008060 1.2e-16 91.3 161 34.8
MD12G1221200 Malus domestica HOM05D006625 ORTHO05D008060 1.4e-12 77.8 55 67.3
HPP92_025561 Vanilla planifolia HOM05D006625 ORTHO05D008060 1.4e-12 77.8 70 45.7
CSS0021359 Camellia sinensis var. sinensis HOM05D006625 ORTHO05D008060 1.0e-10 71.6 123 39.0
CBR_g7977 Chara braunii HOM05D006625 ORTHO05D008060 1.7e-10 70.9 128 33.6


User provided reference genes

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