Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 1.6e-158 562.8 290 100.0
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 4.7e-155 551.2 290 97.9
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 7.5e-153 543.9 290 96.9
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 2.7e-150 535.4 292 93.8
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 9.6e-140 500.4 298 89.3
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 6.8e-138 494.2 298 89.3
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 8.4e-136 487.3 297 85.2
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 1.3e-123 446.8 296 78.0
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 1.4e-122 443.4 296 77.7
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 9.0e-122 440.7 296 78.0
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 3.4e-121 438.7 294 77.9
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 8.4e-120 434.1 296 76.4
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 2.4e-119 432.6 294 76.9
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 5.5e-119 431.4 294 77.6
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 7.1e-119 431.0 294 76.5
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 1.2e-118 430.3 296 76.4
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 2.7e-118 429.1 298 76.8
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 4.6e-118 428.3 294 77.6
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 1.8e-117 426.4 296 75.0
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 3.0e-117 425.6 297 75.4
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 3.9e-117 425.2 297 75.1
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 3.9e-117 425.2 295 75.3
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 1.1e-116 423.7 296 74.7
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 1.5e-116 423.3 296 75.7
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 1.9e-116 422.9 296 74.0
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 3.3e-116 422.2 296 74.7
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 7.4e-116 421.0 298 75.5
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 7.4e-116 421.0 296 74.7
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 1.6e-115 419.9 294 74.5
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 2.1e-115 419.5 296 74.7
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 3.7e-115 418.7 291 74.9
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 3.7e-115 418.7 291 74.2
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 3.7e-115 418.7 294 74.5
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 4.8e-115 418.3 304 74.7
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 6.2e-115 417.9 296 73.3
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 6.2e-115 417.9 292 75.0
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 1.4e-114 416.8 296 76.7
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 1.8e-114 416.4 301 73.8
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 2.4e-114 416.0 298 75.8
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 4.0e-114 415.2 292 74.7
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 5.3e-114 414.8 292 74.7
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 5.3e-114 414.8 296 72.6
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 6.9e-114 414.5 296 74.3
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 9.0e-114 414.1 290 74.1
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 1.2e-113 413.7 303 72.6
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.2e-113 413.7 292 74.7
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 1.5e-113 413.3 299 73.2
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.5e-113 413.3 292 74.3
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 2.0e-113 412.9 300 73.7
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.0e-113 412.9 292 74.3
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 2.0e-113 412.9 293 73.7
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 2.0e-113 412.9 296 75.0
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.6e-113 412.5 293 74.1
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 5.8e-113 411.4 298 74.8
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 1.3e-112 410.2 297 72.7
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 1.3e-112 410.2 296 74.7
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 2.2e-112 409.5 296 74.7
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 3.8e-112 408.7 293 74.4
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 4.9e-112 408.3 298 74.5
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 8.4e-112 407.5 294 74.5
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 8.4e-112 407.5 298 73.8
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 8.4e-112 407.5 293 73.4
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 1.1e-111 407.1 298 71.5
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 1.1e-111 407.1 299 71.6
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 1.9e-111 406.4 293 74.1
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 2.5e-111 406.0 294 74.5
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 3.2e-111 405.6 296 73.3
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 1.6e-110 403.3 296 71.6
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 1.3e-109 400.2 299 72.6
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 3.9e-109 398.7 297 70.7
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 5.1e-109 398.3 293 71.7
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 3.3e-108 395.6 299 71.9
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 5.7e-108 394.8 297 70.4
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 9.6e-108 394.0 292 71.9
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 9.6e-108 394.0 292 70.9
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 1.3e-107 393.7 301 71.8
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 2.1e-107 392.9 295 71.2
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 2.8e-107 392.5 298 70.1
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 3.7e-107 392.1 312 67.9
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 3.7e-107 392.1 228 84.2
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 1.1e-106 390.6 291 70.1
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 5.3e-106 388.3 297 69.0
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 3.4e-105 385.6 240 82.1
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 3.4e-105 385.6 257 76.7
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 7.6e-105 384.4 235 81.3
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 1.0e-104 384.0 292 70.2
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 2.2e-104 382.9 295 69.2
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 1.9e-103 379.8 291 67.4
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 2.5e-103 379.4 295 69.5
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 2.5e-103 379.4 291 69.1
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 2.5e-103 379.4 291 69.1
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 4.2e-103 378.6 291 69.1
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 4.2e-103 378.6 291 69.1
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 4.2e-103 378.6 291 69.1
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 7.2e-103 377.9 298 69.5
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 1.2e-102 377.1 294 67.0
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 1.2e-102 377.1 302 67.2
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 1.2e-102 377.1 294 69.4
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 1.6e-102 376.7 291 69.1
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 2.7e-102 375.9 291 68.4
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 3.6e-102 375.6 295 69.2
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 1.3e-101 373.6 225 83.1
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 3.2e-95 352.4 293 65.2
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 5.5e-95 351.7 234 76.5
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 2.3e-93 346.3 205 83.4
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 9.7e-92 340.9 223 77.1
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 2.8e-91 339.3 290 63.1
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 3.1e-90 335.9 229 72.9
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 2.9e-88 329.3 227 72.7
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 5.0e-88 328.6 213 74.6
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 9.7e-84 314.3 238 66.8
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 8.2e-83 311.2 250 64.8
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.4e-74 283.9 203 68.0
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 3.5e-73 279.3 229 60.7
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 3.7e-67 259.2 213 67.1
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 5.7e-60 235.3 137 81.0
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 2.7e-57 226.5 145 73.1
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 9.2e-50 201.4 208 48.1
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 7.8e-49 198.4 229 43.2
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 7.3e-39 165.2 222 39.6
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 4.9e-35 152.5 89 85.4
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 5.4e-34 149.1 83 88.0
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 1.2e-33 147.9 86 82.6
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 1.3e-24 117.9 64 85.9
AUR62000865 Chenopodium quinoa HOM05D006416 ORTHO05D008054 9.9e-12 75.1 82 59.8


User provided reference genes

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