Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.1e-170 603.2 300 100.0
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 7.0e-170 600.5 300 99.3
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 9.3e-138 493.8 331 76.4
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.5e-129 465.3 327 74.0
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 1.6e-121 439.9 229 95.6
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 7.6e-116 421.0 298 71.5
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 1.0e-115 420.6 299 70.2
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 6.5e-115 417.9 302 69.2
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 5.5e-114 414.8 298 69.1
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 1.0e-112 410.6 331 64.4
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 1.3e-112 410.2 301 68.4
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 1.5e-108 396.7 227 87.2
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 2.1e-105 386.3 366 56.6
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 2.1e-105 386.3 301 63.8
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 6.1e-105 384.8 300 64.3
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 7.9e-105 384.4 299 64.2
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 3.9e-104 382.1 301 63.1
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 1.9e-103 379.8 304 64.8
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 3.3e-103 379.0 300 64.7
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.6e-102 376.7 298 64.4
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 2.8e-102 375.9 304 64.1
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 2.8e-102 375.9 300 64.0
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.4e-101 373.6 301 62.1
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 1.8e-101 373.2 300 63.3
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.1e-101 372.5 301 62.5
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 5.3e-101 371.7 295 63.7
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 5.3e-101 371.7 305 61.3
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 1.2e-100 370.5 305 61.0
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 4.5e-100 368.6 223 77.6
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.5e-100 368.6 315 59.4
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.5e-100 368.6 301 61.5
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 4.5e-100 368.6 303 62.7
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 5.9e-100 368.2 305 61.0
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 2.2e-99 366.3 298 62.4
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 2.9e-99 365.9 320 59.1
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.8e-99 365.5 315 58.7
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 8.5e-99 364.4 304 63.8
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 4.2e-98 362.1 221 78.7
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 2.7e-97 359.4 296 61.1
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 6.1e-97 358.2 235 75.3
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 1.0e-96 357.5 300 60.3
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 3.0e-96 355.9 243 72.8
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 6.7e-96 354.8 295 62.0
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 1.1e-95 354.0 301 60.8
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 7.4e-95 351.3 235 72.3
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 9.7e-95 350.9 296 60.8
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 1.3e-94 350.5 313 57.2
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 1.7e-94 350.1 313 56.5
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 4.8e-94 348.6 301 59.8
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 8.2e-94 347.8 304 58.6
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 1.1e-93 347.4 279 62.7
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 1.4e-93 347.1 315 57.5
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.4e-93 347.1 315 57.1
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 1.4e-93 347.1 180 94.4
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 1.4e-93 347.1 315 57.1
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 1.4e-93 347.1 309 59.9
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 1.8e-93 346.7 271 63.1
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 2.4e-93 346.3 298 59.7
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 3.1e-93 345.9 315 57.5
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 4.1e-93 345.5 313 56.5
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 9.1e-93 344.4 328 55.2
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 1.2e-92 344.0 287 62.0
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 2.0e-92 343.2 315 56.5
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 2.6e-92 342.8 247 68.0
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 2.6e-92 342.8 297 60.6
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 1.3e-91 340.5 328 54.6
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.7e-91 340.1 243 67.5
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 2.9e-91 339.3 301 58.5
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 2.9e-91 339.3 303 58.4
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 1.4e-90 337.0 314 56.4
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 1.2e-89 334.0 296 58.1
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 2.7e-89 332.8 197 77.2
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 1.0e-88 330.9 217 74.2
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.8e-88 330.1 300 56.7
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 3.0e-88 329.3 253 65.6
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 9.7e-87 324.3 269 59.9
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 1.7e-86 323.6 326 54.6
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 3.7e-86 322.4 205 71.7
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 1.4e-85 320.5 273 61.9
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 1.6e-84 317.0 301 57.5
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 1.5e-82 310.5 219 63.9
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 5.2e-80 302.0 175 81.7
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 6.7e-80 301.6 269 59.1
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 2.0e-79 300.1 284 59.2
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 9.7e-79 297.7 205 73.7
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 9.7e-79 297.7 309 51.5
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 3.7e-78 295.8 207 68.1
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 6.5e-75 285.0 259 58.7
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 1.8e-72 276.9 294 52.0
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 2.1e-65 253.4 462 37.9
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 3.6e-65 252.7 268 51.5
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 4.9e-62 242.3 179 63.7
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 7.3e-58 228.4 219 54.3
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 3.0e-56 223.0 270 46.3
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 2.4e-53 213.4 224 48.2
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 1.0e-51 208.0 217 54.4
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 3.9e-51 206.1 202 54.5
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 3.9e-51 206.1 245 42.9
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 3.3e-50 203.0 209 48.3
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 2.1e-49 200.3 156 63.5
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 8.0e-49 198.4 236 47.9
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 2.9e-46 189.9 262 44.3
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 3.5e-44 183.0 230 42.2
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 6.0e-44 182.2 155 60.6
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 6.0e-44 182.2 288 41.7
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.9e-37 160.6 276 40.9
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 1.9e-34 150.6 160 49.4
unitig_747.g21345 Utricularia gibba HOM05D004613 ORTHO05D006095 2.4e-29 133.7 71 83.1
Cc02_g32600 Coffea canephora HOM05D004613 ORTHO05D006095 2.1e-25 120.6 69 75.4
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 2.4e-24 117.1 236 30.1
MD04G1209900 Malus domestica HOM05D004613 ORTHO05D006095 8.4e-22 108.6 59 86.4
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 6.0e-20 102.4 111 55.0
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 1.6e-12 77.8 98 49.0
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 2.1e-12 77.4 85 44.7
SEGI_04064 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 5.1e-11 72.8 52 61.5
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 1.9e-10 70.9 50 64.0
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 2.5e-10 70.5 49 67.3
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 8.1e-09 65.5 49 59.2
Cre02.g117300 Chlamydomonas reinhardtii HOM05D004613 ORTHO05D006095 5.3e-08 62.8 168 27.4
C04p20620 Brassica napus HOM05D000249 ORTHO05D032228 4.5e-07 59.7 29 82.8
BolC2t08054H Brassica oleracea HOM05D004613 ORTHO05D014940 2.2e-06 57.4 30 76.7
BraA06t25731Z Brassica rapa HOM05D030286 ORTHO05D014940 4.9e-06 56.2 67 47.8


User provided reference genes

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