Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 0.0e+00 1864.7 908 100.0
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 0.0e+00 1816.2 908 97.4
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1310.8 914 72.8
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1292.7 896 72.8
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 0.0e+00 1286.2 911 69.9
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 0.0e+00 1256.9 896 72.2
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 2.4e-189 666.8 933 44.4
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 6.6e-187 658.7 832 46.6
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 7.3e-186 655.2 931 42.4
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 5.4e-181 639.0 958 41.1
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 2.1e-172 610.5 960 40.9
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 1.3e-171 607.8 934 40.7
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 2.3e-171 607.1 914 42.0
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.1e-170 604.7 944 41.3
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 4.0e-168 596.3 947 39.1
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 6.8e-168 595.5 925 38.7
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 2.4e-165 587.0 938 39.7
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 2.1e-164 583.9 945 39.9
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 2.7e-164 583.6 935 39.4
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.3e-163 581.3 952 38.7
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 1.1e-162 578.2 783 44.1
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 4.3e-162 576.2 936 38.9
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 4.3e-162 576.2 947 39.0
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 5.6e-162 575.9 918 39.0
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 2.8e-161 573.5 941 39.0
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 2.8e-161 573.5 948 38.9
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 3.6e-161 573.2 936 38.7
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 3.4e-159 566.6 938 38.2
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 7.6e-159 565.5 934 38.2
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 2.4e-157 560.5 967 37.6
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 7.1e-157 558.9 954 39.0
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 2.7e-156 557.0 920 38.5
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 3.5e-156 556.6 934 38.0
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 1.7e-155 554.3 934 38.5
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 4.3e-154 549.7 938 37.8
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 9.6e-154 548.5 932 38.4
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 1.3e-153 548.1 808 40.6
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 1.6e-153 547.7 945 37.4
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 6.2e-153 545.8 933 38.6
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 3.1e-152 543.5 929 37.5
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 9.9e-151 538.5 934 36.9
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 4.2e-149 533.1 926 35.2
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 7.1e-149 532.3 938 37.8
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 4.6e-148 529.6 936 38.0
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 6.0e-148 529.3 923 37.4
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 2.3e-147 527.3 942 36.9
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 5.1e-147 526.2 925 36.6
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 2.1e-145 520.8 928 37.6
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 5.3e-144 516.2 922 35.9
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 9.0e-144 515.4 937 36.7
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.2e-143 515.0 893 38.0
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 3.4e-143 513.5 920 35.9
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 5.8e-143 512.7 732 41.5
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.1e-141 508.4 945 37.6
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.1e-141 508.4 891 35.8
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 1.9e-141 507.7 928 36.7
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 3.2e-141 506.9 917 35.9
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 7.9e-140 502.3 916 36.2
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 1.0e-139 501.9 927 36.4
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.8e-139 501.1 945 37.1
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 4.8e-137 493.0 927 35.7
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 5.3e-136 489.6 943 35.7
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 3.4e-135 486.9 894 36.2
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.6e-132 478.0 934 35.7
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 4.3e-130 469.9 904 34.6
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 1.1e-125 455.3 752 37.5
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.6e-124 451.4 930 34.3
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 3.0e-123 447.2 931 34.3
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 8.2e-121 439.1 940 33.0
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 5.3e-120 436.4 943 34.0
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 2.2e-118 431.0 540 45.7
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 4.6e-116 423.3 890 34.9
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 7.9e-116 422.5 949 32.5
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 3.9e-115 420.2 905 33.7
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 1.5e-114 418.3 888 33.1
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 3.3e-114 417.2 947 32.0
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 7.9e-108 396.0 917 31.4
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 3.9e-107 393.7 633 40.4
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 4.4e-106 390.2 892 31.2
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.7e-105 387.1 950 31.3
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.1e-104 385.6 921 31.7
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 1.2e-103 382.1 918 30.9
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 6.5e-102 376.3 938 31.3
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 1.5e-101 375.2 890 31.2
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.2e-101 374.0 740 35.4
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 9.4e-101 372.5 887 31.0
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 7.5e-98 362.8 905 31.4
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 3.7e-97 360.5 908 31.3
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.8e-96 358.2 891 30.1
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 1.2e-95 355.5 905 31.0
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 9.4e-93 345.9 910 30.3
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 2.6e-90 337.8 753 30.9
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.7e-86 325.1 939 29.2
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 5.0e-86 323.6 443 43.1
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 7.2e-85 319.7 684 33.0
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 2.8e-84 317.8 984 29.9
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 1.8e-80 305.1 822 31.5
PGSC0003DMG403028564 Solanum tuberosum HOM05D004345 ORTHO05D005192 4.4e-74 283.9 144 94.4
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 7.8e-71 273.1 547 32.9
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 7.8e-71 273.1 964 28.7
Aqoxy7G01729 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 4.3e-69 267.3 491 35.6
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 7.5e-66 256.5 662 30.7
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.7e-65 255.4 583 31.6
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 1.7e-62 245.4 941 27.9
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.3e-62 245.0 938 27.5
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 3.9e-62 244.2 636 29.9
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 1.7e-57 228.8 931 25.6
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 3.7e-57 227.6 504 31.3
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 4.6e-55 220.7 944 24.2
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.1e-51 209.5 425 34.6
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-51 209.1 696 28.4
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 2.4e-51 208.4 618 28.5
PSO384G0711 Papaver somniferum HOM05D004345 ORTHO05D005192 6.8e-51 206.8 395 34.2
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.7e-46 192.2 511 29.7
ATR0022G053 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.5e-45 189.1 376 34.3
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.6e-44 184.5 428 33.4
RcHm_v2.0_Chr6g0264721 Rosa chinensis HOM05D004345 ORTHO05D005192 3.4e-42 177.9 206 44.2
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 3.5e-39 167.9 416 30.5
QL07p000983 Quercus lobata HOM05D004345 ORTHO05D005192 3.0e-38 164.9 189 45.0
CAN.G1428.6 Capsicum annuum HOM05D004345 ORTHO05D005192 9.9e-34 149.8 92 80.4
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 4.2e-32 144.4 338 32.0
Peaxi162Scf00165g00216 Petunia axillaris HOM05D004345 ORTHO05D005192 4.2e-32 144.4 184 48.4
Gorai.007G313800 Gossypium raimondii HOM05D004345 ORTHO05D005192 1.4e-27 129.4 160 42.5
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.1e-27 128.3 536 28.0
Gohir.D11G289900 Gossypium hirsutum HOM05D004345 ORTHO05D005192 4.0e-27 127.9 160 41.9
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 2.0e-26 125.6 280 32.9
SMO203G0127 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 9.9e-26 123.2 623 23.4
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 2.2e-25 122.1 218 33.0
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 7.1e-24 117.1 246 33.7
SMO297G0008 Selaginella moellendorffii HOM05D004345 ORTHO05D005192 1.8e-22 112.5 499 23.6
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 3.0e-22 111.7 473 26.4
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.3e-20 106.3 232 34.9
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 1.6e-20 105.9 208 30.8
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 1.6e-20 105.9 208 30.8
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 4.8e-20 104.4 455 28.4
Oeu011014.1 Olea europaea HOM05D004345 ORTHO05D005192 1.8e-19 102.4 144 41.7
Pp3c14_24820 Physcomitrium patens HOM05D004345 ORTHO05D005192 1.8e-19 102.4 544 24.1
Psat5g200920 Pisum sativum HOM05D000856 ORTHO05D005192 5.3e-19 100.9 112 45.5
Oeu028553.1 Olea europaea HOM05D004345 ORTHO05D005192 1.2e-18 99.8 144 41.0
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 2.6e-18 98.6 327 26.3
Mapoly0100s0030 Marchantia polymorpha HOM05D004345 ORTHO05D005192 1.1e-16 93.2 538 24.9
ATR0964G004 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.5e-15 88.2 385 26.8
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 2.3e-14 85.5 301 28.6
AagrBONN_evm.TU.Sc2ySwM_344.4665 Anthoceros agrestis HOM05D004345 ORTHO05D005192 6.7e-14 84.0 401 23.2
ATR0792G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.4e-11 76.3 387 25.6
Sc22g0003820 Simmondsia chinensis HOM05D004345 ORTHO05D005192 1.3e-09 69.7 185 29.2
BcaB06g25877 Brassica carinata HOM05D004345 ORTHO05D005192 1.4e-06 59.7 64 46.9
CDE04G1779 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 8.8e-06 57.0 221 27.1


User provided reference genes

Program Settings