Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 2.5e-265 918.3 499 100.0
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.3e-261 906.0 499 98.6
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 6.1e-243 844.0 499 91.0
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 5.3e-231 804.3 512 86.1
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.8e-223 779.2 492 86.8
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 2.0e-206 722.6 456 87.9
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 9.5e-204 713.8 499 80.8
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 2.0e-190 669.5 501 70.5
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.3e-188 661.8 499 68.1
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 3.1e-178 629.0 499 66.7
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 5.2e-178 628.2 507 67.7
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.9e-175 619.8 499 65.5
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.1e-175 618.6 502 65.9
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.2e-174 617.1 499 65.1
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.9e-172 609.8 502 65.3
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 3.3e-172 609.0 499 65.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 7.3e-172 607.8 499 63.7
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.4e-170 603.6 499 63.3
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 3.1e-170 602.4 505 64.0
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 1.5e-169 600.1 503 63.4
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.6e-169 599.4 499 64.7
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 9.9e-169 597.4 499 64.9
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 9.9e-169 597.4 499 63.5
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.7e-168 596.7 499 64.5
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 8.4e-168 594.3 499 67.3
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.0e-166 588.2 499 60.9
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 7.8e-166 587.8 467 66.2
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 3.0e-165 585.9 508 62.4
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 3.0e-165 585.9 499 62.9
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 5.1e-165 585.1 499 62.3
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 1.9e-164 583.2 501 61.9
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.3e-163 580.5 500 63.0
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 1.4e-162 577.0 467 66.4
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 1.4e-162 577.0 499 61.1
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.4e-162 577.0 503 63.2
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 3.1e-162 575.9 499 61.3
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 9.0e-162 574.3 501 61.7
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 9.0e-162 574.3 501 61.7
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 9.9e-161 570.9 499 61.7
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 9.9e-161 570.9 499 62.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.2e-160 569.7 496 62.1
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 8.4e-160 567.8 501 61.3
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 8.4e-160 567.8 499 61.5
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.1e-159 567.4 499 59.9
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.1e-159 567.4 501 62.1
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 5.4e-159 565.1 499 60.1
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 1.0e-157 560.8 499 61.1
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.7e-157 560.1 501 60.3
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 4.3e-156 555.4 547 57.6
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.8e-155 552.0 499 63.9
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 3.1e-154 549.3 466 62.4
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 5.3e-154 548.5 499 58.3
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 5.3e-154 548.5 437 68.4
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 6.9e-154 548.1 500 58.4
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.2e-153 547.4 499 60.3
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.6e-153 546.2 408 69.1
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.4e-153 545.8 499 57.3
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 3.8e-152 542.3 499 60.5
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 6.4e-152 541.6 499 60.1
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.1e-151 540.8 429 66.4
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 4.2e-151 538.9 453 62.5
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 1.2e-150 537.3 396 79.5
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 1.2e-150 537.3 514 58.9
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.2e-150 537.3 499 58.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 2.7e-150 536.2 499 58.1
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 6.0e-150 535.0 499 59.9
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 5.1e-149 531.9 502 56.4
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 3.3e-148 529.3 517 54.9
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 9.6e-148 527.7 502 57.0
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.4e-146 523.1 503 57.3
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.2e-145 520.8 455 65.5
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 7.6e-145 518.1 456 63.8
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.3e-144 517.3 499 55.9
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-144 516.2 491 56.4
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 2.9e-144 516.2 503 58.6
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.2e-143 512.7 500 61.8
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 9.3e-143 511.1 467 64.5
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.2e-142 510.8 499 56.7
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.6e-142 508.8 499 55.3
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.0e-142 508.4 485 56.5
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.8e-141 506.9 499 55.9
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.3e-141 506.5 500 57.8
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.1e-140 504.2 522 53.6
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.5e-140 503.8 499 55.9
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-139 500.4 495 54.7
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-139 499.6 530 53.4
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.8e-139 499.6 468 57.3
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.1e-138 496.1 500 57.0
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 5.3e-138 495.4 500 54.4
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.2e-137 494.2 500 54.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 2.6e-137 493.0 457 58.9
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 5.8e-137 491.9 499 53.9
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 5.8e-137 491.9 499 54.3
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 7.6e-137 491.5 499 53.7
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.0e-136 491.1 500 53.4
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 2.9e-136 489.6 500 53.6
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-136 489.6 477 56.0
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 8.4e-136 488.0 500 54.2
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.1e-135 487.6 502 54.4
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 3.2e-135 486.1 500 55.2
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-134 483.8 500 54.6
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 1.6e-134 483.8 500 54.6
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 6.1e-134 481.9 593 49.2
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.8e-133 480.3 518 54.1
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 3.0e-133 479.6 506 54.2
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 3.9e-133 479.2 499 56.5
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.9e-132 476.9 499 52.9
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 5.7e-132 475.3 499 53.1
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 9.7e-132 474.6 443 58.0
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 1.6e-131 473.8 499 54.7
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.2e-131 473.4 486 54.1
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 2.6e-129 466.5 499 53.3
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 5.9e-129 465.3 499 53.5
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 1.0e-128 464.5 500 53.0
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 1.7e-128 463.8 500 53.0
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.4e-127 460.7 507 54.2
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 1.4e-127 460.7 452 55.3
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 7.2e-127 458.4 499 52.1
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.6e-126 457.2 478 55.6
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 3.9e-125 452.6 486 54.3
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 2.5e-124 449.9 500 52.0
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 5.7e-124 448.7 532 49.1
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 9.7e-124 448.0 452 56.6
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 4.1e-122 442.6 398 57.3
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 5.0e-120 435.6 216 100.0
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 3.0e-117 426.4 507 49.1
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.4e-116 421.8 547 47.5
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 9.7e-116 421.4 547 47.5
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 2.8e-115 419.9 502 49.0
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 5.3e-114 415.6 499 48.5
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 4.5e-113 412.5 412 53.4
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 1.0e-109 401.4 486 47.7
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.8e-106 390.6 491 49.9
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.9e-104 383.3 499 45.7
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 2.8e-99 366.7 499 48.1
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 5.0e-96 355.9 422 49.8
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.1e-95 354.8 216 77.8
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.5e-95 354.4 414 53.1
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.1e-94 350.5 456 43.4
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 9.8e-92 341.7 360 54.4
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 1.3e-91 341.3 299 55.9
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 3.8e-88 329.7 453 40.2
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 1.1e-87 328.2 222 69.4
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 2.8e-86 323.6 319 50.8
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 6.8e-85 318.9 320 50.6
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.0e-80 305.1 314 49.4
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-63 248.1 176 67.0
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.9e-55 221.1 156 70.5
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 1.0e-48 198.7 135 66.7
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 2.5e-47 194.1 234 57.3
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 4.8e-46 189.9 242 47.5
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 3.4e-44 183.7 330 40.0
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 5.8e-44 183.0 247 39.3
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.4e-37 161.0 244 34.8
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 6.4e-35 152.9 284 39.1
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 1.0e-32 145.6 94 71.3
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 1.8e-32 144.8 190 38.9
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 2.3e-24 117.9 124 57.3
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 6.3e-22 109.8 76 61.8
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 8.2e-22 109.4 70 67.1
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 7.6e-20 102.8 119 52.9
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.3e-15 87.4 98 51.0
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 1.3e-14 85.5 56 67.9
Cfa026408 Carpinus fangiana HOM05D004208 ORTHO05D121639 3.7e-14 84.0 276 25.0
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 1.9e-10 71.6 43 76.7
HanXRQChr10g0299451 Helianthus annuus HOM05D004208 ORTHO05D219928 6.1e-09 66.6 109 33.9
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 2.3e-08 64.7 74 44.6


User provided reference genes

Program Settings