Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 2335.5 1200 100.0
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 2209.1 1200 94.2
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 2160.6 1198 92.2
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 2052.3 1205 87.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 2010.7 1198 87.2
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1837.8 1206 77.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1772.3 1208 75.0
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1768.4 1208 75.2
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1765.0 1207 74.6
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1760.3 1202 74.5
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1752.3 1208 74.9
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1748.8 1199 74.2
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1746.1 1204 74.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1745.3 1201 74.0
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1744.9 1210 73.3
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1740.3 1202 74.0
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1737.6 1202 74.0
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1736.1 1200 73.4
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1735.7 1208 72.8
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1723.0 1182 75.0
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1720.3 1204 72.0
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1719.5 1198 73.0
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1718.4 1207 72.3
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1718.0 1202 73.7
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1716.8 1172 74.9
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1712.2 1203 72.3
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1708.7 1203 72.2
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1705.3 1202 72.0
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1703.0 1197 72.8
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1697.2 1198 71.7
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1692.2 1203 70.9
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1687.9 1198 72.0
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1687.2 1197 71.9
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1682.9 1197 71.3
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1681.8 1198 71.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1681.4 1203 70.9
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1679.8 1198 71.6
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1674.8 1206 70.6
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1673.3 1198 71.4
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1671.4 1199 71.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1670.6 1207 70.6
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1666.7 1177 71.9
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1666.4 1207 70.8
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1661.7 1199 71.6
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1656.7 1205 69.0
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1656.3 1209 70.1
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1650.2 1201 69.5
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1640.2 1202 68.6
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1637.9 1218 68.3
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1634.8 1203 69.8
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1632.5 1200 68.8
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1628.6 1159 70.8
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1626.3 1205 68.0
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1624.0 1215 68.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1622.4 1204 68.8
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1621.7 1206 68.2
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1615.1 1199 70.1
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1608.2 1208 67.4
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1607.0 1199 67.1
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1602.8 1199 67.9
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1595.1 1202 67.3
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1591.2 1197 67.0
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1590.1 1202 67.3
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1590.1 1201 67.8
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1584.7 1204 66.9
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1584.7 1203 66.6
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1580.1 1198 67.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1577.0 1199 67.4
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1575.1 1257 65.6
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1567.4 1201 66.6
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1565.4 1204 65.9
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1565.1 1207 66.6
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1563.9 1167 68.5
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1563.1 1204 65.9
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1562.7 1202 66.3
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1561.6 1199 66.2
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1561.6 802 99.8
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1560.4 1202 66.3
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1554.3 1205 66.3
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1550.8 1208 66.1
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1543.1 1199 66.0
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1529.6 1181 66.0
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1527.3 1200 67.4
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1526.5 1205 65.9
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1523.5 1191 65.2
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1503.8 1180 65.3
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1496.5 1189 64.3
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1493.4 1116 67.7
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1489.9 1184 64.7
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1481.5 1135 66.5
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1471.4 981 76.8
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1465.3 1203 63.1
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1454.5 1293 61.9
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1435.6 1210 61.5
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1382.1 1218 59.5
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1378.2 1198 60.2
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1376.3 1018 68.2
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1362.4 1137 61.7
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1357.4 1185 60.5
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1356.3 1202 58.0
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1352.4 1207 60.3
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1245.0 1051 62.3
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1226.1 629 99.5
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1152.5 960 63.5
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1146.0 887 64.9
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1100.5 836 68.7
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 2.9e-299 1032.3 1148 52.1
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 3.0e-272 942.6 1249 44.0
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 8.8e-272 941.0 1246 42.8
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 5.3e-269 931.8 1241 42.9
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 4.2e-250 869.0 1185 44.2
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.8e-240 837.0 1154 43.6
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 9.8e-239 831.2 1210 40.6
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-238 830.1 1176 43.3
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 4.9e-238 828.9 1154 43.3
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 5.2e-224 782.3 802 52.4
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 7.5e-223 778.5 1043 45.8
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.2e-212 744.6 1215 37.0
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 4.0e-208 729.6 600 66.0
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.0e-195 686.8 630 57.9
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.1e-192 678.3 570 60.7
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.1e-176 625.2 539 59.0
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 6.3e-169 599.4 321 96.9
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 1.2e-167 595.1 469 69.3
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.0e-167 594.3 418 73.0
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 2.9e-158 563.9 297 99.3
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.3e-153 546.2 485 59.4
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.0e-110 406.0 210 99.0
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 5.6e-85 320.5 1396 24.1
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.3e-78 299.3 210 69.5
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 2.7e-71 275.0 267 52.1
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 2.3e-70 271.9 187 74.9
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.7e-57 229.2 471 33.8
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 1.9e-56 225.7 215 56.3
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 6.3e-52 210.7 510 30.2
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 1.1e-40 173.3 109 78.9
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 6.1e-31 141.0 847 19.8
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 4.2e-24 118.2 96 65.6
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 7.0e-19 100.9 73 67.1
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 1.2e-15 90.1 90 53.3
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 1.0e-14 87.0 73 61.6
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 8.8e-14 84.0 349 26.1
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 1.2e-13 83.6 50 88.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 1.2e-13 83.6 50 88.0
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 2.0e-13 82.8 63 66.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 3.4e-13 82.0 80 51.2
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 1.4e-11 76.6 78 55.1
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 1.6e-10 73.2 69 52.2
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 1.6e-10 73.2 36 97.2
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 1.6e-10 73.2 88 51.1
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.7e-10 72.4 77 44.2
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 2.7e-10 72.4 318 24.2
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 1.3e-09 70.1 65 60.0
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 3.8e-09 68.6 65 58.5
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 8.6e-09 67.4 182 26.9
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 8.6e-09 67.4 59 59.3
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.2e-08 65.1 64 53.1
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 7.2e-08 64.3 108 38.9
CAN.G27.13 Capsicum annuum HOM05D001016 ORTHO05D016153 1.6e-07 63.2 75 46.7
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.4e-06 60.1 160 30.0
CAN.G71.10 Capsicum annuum HOM05D001871 ORTHO05D002022 1.8e-06 59.7 97 45.4
Sabra13G0031100 Salix brachista HOM05D004384 ORTHO05D037489 3.0e-06 58.9 84 41.7


User provided reference genes

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