Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098060.1 Solanum lycopersicum HOM05D000203 ORTHO05D010688 1.9e-78 295.8 153 100.0
PGSC0003DMG400042000 Solanum tuberosum HOM05D000203 ORTHO05D010688 8.8e-60 233.8 156 80.1
PGSC0003DMG400022462 Solanum tuberosum HOM05D000203 ORTHO05D010688 3.1e-57 225.3 156 77.6
PGSC0003DMG400037739 Solanum tuberosum HOM05D000203 ORTHO05D010688 7.7e-56 220.7 156 74.4
PGSC0003DMG400022464 Solanum tuberosum HOM05D000203 ORTHO05D010688 2.9e-55 218.8 156 73.1
PGSC0003DMG400044662 Solanum tuberosum HOM05D000203 ORTHO05D010688 2.7e-53 212.2 156 73.1
Sopen01g041630 Solanum pennellii HOM05D000203 ORTHO05D010688 3.0e-52 208.8 156 70.5
Solyc01g098070.1 Solanum lycopersicum HOM05D000203 ORTHO05D010688 1.4e-49 199.9 156 69.2
CAN.G134.193 Capsicum annuum HOM05D000203 ORTHO05D010688 1.4e-44 183.3 162 62.3
Nitab4.5_0002840g0130 Nicotiana tabacum HOM05D000203 ORTHO05D010688 3.4e-43 178.7 156 62.2
Nitab4.5_0005688g0010 Nicotiana tabacum HOM05D000203 ORTHO05D010688 1.7e-42 176.4 156 61.5
PGSC0003DMG400022465 Solanum tuberosum HOM05D000203 ORTHO05D010688 1.0e-39 167.2 165 57.0
Peaxi162Scf00225g00021 Petunia axillaris HOM05D000203 ORTHO05D010688 1.8e-36 156.4 159 56.0
Sopen03g015140 Solanum pennellii HOM05D000203 ORTHO05D010688 3.0e-36 155.6 156 58.3
Solyc01g098050.1 Solanum lycopersicum HOM05D000203 ORTHO05D010688 1.2e-35 153.7 162 53.7
PGSC0003DMG400035140 Solanum tuberosum HOM05D000203 ORTHO05D010688 1.2e-35 153.7 103 81.6
PGSC0003DMG400046651 Solanum tuberosum HOM05D000203 ORTHO05D010688 1.5e-35 153.3 157 55.4
Peaxi162Scf00225g00024 Petunia axillaris HOM05D000203 ORTHO05D010688 2.6e-35 152.5 154 55.2
PGSC0003DMG400022460 Solanum tuberosum HOM05D000203 ORTHO05D010688 6.4e-34 147.9 163 55.8
Solyc03g062820.1 Solanum lycopersicum HOM05D000203 ORTHO05D010688 1.4e-33 146.7 156 55.8
CAN.G134.190 Capsicum annuum HOM05D000042 ORTHO05D010688 2.0e-32 142.9 156 51.9
PGSC0003DMG400047143 Solanum tuberosum HOM05D000203 ORTHO05D010688 2.0e-32 142.9 153 54.2
Nitab4.5_0001436g0060 Nicotiana tabacum HOM05D000203 ORTHO05D010688 4.3e-30 135.2 139 53.2
Nitab4.5_0005183g0060 Nicotiana tabacum HOM05D000203 ORTHO05D010688 7.3e-30 134.4 139 53.2
CAN.G134.188 Capsicum annuum HOM05D000203 ORTHO05D010688 1.4e-25 120.2 169 43.8
CAN.G134.192 Capsicum annuum HOM05D000203 ORTHO05D010688 1.4e-25 120.2 169 43.8
Nitab4.5_0005183g0070 Nicotiana tabacum HOM05D000203 ORTHO05D010688 8.6e-23 110.9 115 54.8
Cc06_g19260 Coffea canephora HOM05D000203 ORTHO05D010688 4.1e-17 92.0 139 38.1
Cc06_g19220 Coffea canephora HOM05D000203 ORTHO05D010688 7.1e-17 91.3 143 37.8
Nitab4.5_0002761g0060 Nicotiana tabacum HOM05D000203 ORTHO05D010688 1.2e-16 90.5 143 40.6
Nitab4.5_0005362g0010 Nicotiana tabacum HOM05D000203 ORTHO05D010688 1.6e-16 90.1 154 39.6
Dinv14980 Davidia involucrata HOM05D000203 ORTHO05D010688 1.1e-14 84.0 135 37.8
Dinv14984 Davidia involucrata HOM05D000203 ORTHO05D000135 1.1e-14 84.0 135 37.8
DCAR_002889 Daucus carota HOM05D000203 ORTHO05D010688 1.5e-14 83.6 147 34.7
Rhsim06G0206800 Rhododendron simsii HOM05D000203 ORTHO05D000135 4.7e-13 78.6 161 34.8
Atru.chr10.1015 Acer truncatum HOM05D000203 ORTHO05D010688 3.8e-10 68.9 144 31.2
Ciclev10022548m.g Citrus clementina HOM05D000203 ORTHO05D010688 3.8e-10 68.9 150 32.0
PGSC0003DMG400011316 Solanum tuberosum HOM05D000203 ORTHO05D010688 1.4e-09 67.0 69 50.7
CANSAT54G2621 Cannabis sativa HOM05D000203 ORTHO05D010688 2.4e-09 66.2 143 32.9
Atru.chr10.1024 Acer truncatum HOM05D000203 ORTHO05D010688 4.1e-09 65.5 144 30.6
TAR624G0828 Trochodendron aralioides HOM05D000203 ORTHO05D000135 4.1e-09 65.5 146 33.6
Ciclev10024318m.g Citrus clementina HOM05D000203 ORTHO05D010688 5.4e-09 65.1 149 29.5
Solyc01g066730.4 Solanum lycopersicum HOM05D000203 ORTHO05D051037 7.1e-09 64.7 65 53.8
Sopen01g028340 Solanum pennellii HOM05D000203 ORTHO05D051037 9.2e-09 64.3 65 53.8
TAR636G2055 Trochodendron aralioides HOM05D000203 ORTHO05D000135 1.6e-08 63.5 145 32.4
PSO832G4150 Papaver somniferum HOM05D000203 ORTHO05D000135 2.7e-08 62.8 133 34.6
CSS0013128 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 3.5e-08 62.4 147 26.5
PSO210G5697 Papaver somniferum HOM05D000203 ORTHO05D000135 3.5e-08 62.4 142 28.2
Sopen01g028210 Solanum pennellii HOM05D000203 ORTHO05D037718 4.6e-08 62.0 121 34.7
CANSAT54G1237 Cannabis sativa HOM05D000203 ORTHO05D010688 1.0e-07 60.8 140 30.0
PSO675G2437 Papaver somniferum HOM05D000203 ORTHO05D000135 1.0e-07 60.8 141 27.7
TAR365G1078 Trochodendron aralioides HOM05D000203 ORTHO05D000135 1.7e-07 60.1 148 31.8
Sc17g0005040 Simmondsia chinensis HOM05D000203 ORTHO05D000135 2.3e-07 59.7 143 30.1
THA.LOC104820705 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 2.3e-07 59.7 73 42.5
Solyc01g066500.1 Solanum lycopersicum HOM05D000203 ORTHO05D037718 3.0e-07 59.3 86 44.2
vmacro11928 Vaccinium macrocarpon HOM05D000203 ORTHO05D010688 3.0e-07 59.3 61 47.5
TAR365G0383 Trochodendron aralioides HOM05D000203 ORTHO05D000135 3.9e-07 58.9 148 32.4
TAR365G0895 Trochodendron aralioides HOM05D000203 ORTHO05D000135 3.9e-07 58.9 148 32.4
Atru.chr10.1098 Acer truncatum HOM05D000203 ORTHO05D000135 6.6e-07 58.2 57 50.9
EL10As10g23977 Beta vulgaris HOM05D000203 ORTHO05D000135 6.6e-07 58.2 66 43.9
AUR62027600 Chenopodium quinoa HOM05D000203 ORTHO05D000135 6.6e-07 58.2 66 42.4
PSO210G0103 Papaver somniferum HOM05D000203 ORTHO05D012050 6.6e-07 58.2 133 33.1
vmacro11925 Vaccinium macrocarpon HOM05D000203 ORTHO05D009356 6.6e-07 58.2 61 45.9
Atru.chr10.1322 Acer truncatum HOM05D000203 ORTHO05D000135 8.6e-07 57.8 57 47.4
A09p36560 Brassica napus HOM05D000203 ORTHO05D000135 8.6e-07 57.8 143 30.1
BraA09t39177Z Brassica rapa HOM05D000203 ORTHO05D000135 8.6e-07 57.8 143 30.1
PSO675G7023 Papaver somniferum HOM05D000203 ORTHO05D000135 8.6e-07 57.8 146 26.7
Rhsim06G0206700 Rhododendron simsii HOM05D000203 ORTHO05D010688 8.6e-07 57.8 122 33.6
Hund06112 Selenicereus undatus HOM05D000042 ORTHO05D001427 8.6e-07 57.8 121 30.6
vmacro11926 Vaccinium macrocarpon HOM05D000203 ORTHO05D010688 8.6e-07 57.8 61 45.9
Atru.chr7.1196 Acer truncatum HOM05D000203 ORTHO05D010688 1.1e-06 57.4 61 50.8
Aqoxy7G02670 Aquilegia oxysepala HOM05D000042 ORTHO05D077390 1.1e-06 57.4 67 41.8
Aqoxy7G02746 Aquilegia oxysepala HOM05D062330 ORTHO05D078039 1.1e-06 57.4 67 41.8
AUR62030240 Chenopodium quinoa HOM05D000203 ORTHO05D000135 1.1e-06 57.4 66 42.4
Nitab4.5_0009809g0030 Nicotiana tabacum HOM05D000203 ORTHO05D010688 1.1e-06 57.4 59 55.9
PSO170G6040 Papaver somniferum HOM05D000203 ORTHO05D000135 1.1e-06 57.4 86 38.4
CSS0042830 Camellia sinensis var. sinensis HOM05D000203 ORTHO05D000135 1.5e-06 57.0 59 45.8
PSO170G5358 Papaver somniferum HOM05D000203 ORTHO05D000135 1.5e-06 57.0 73 39.7
Peaxi162Scf00016g02742 Petunia axillaris HOM05D000001 ORTHO05D306469 1.5e-06 57.0 56 55.4
Potri.009G046100 Populus trichocarpa HOM05D000203 ORTHO05D000135 1.5e-06 57.0 66 45.5
Sed0017436 Sechium edule HOM05D000203 ORTHO05D000135 1.5e-06 57.0 158 31.6
Cpa.g.sc20.86 Carica papaya HOM05D000203 ORTHO05D000135 1.9e-06 56.6 147 29.9
PSO210G6024 Papaver somniferum HOM05D000203 ORTHO05D012050 1.9e-06 56.6 129 32.6
Potri.001G251400 Populus trichocarpa HOM05D000203 ORTHO05D000135 1.9e-06 56.6 124 31.5
Prupe.1G087700 Prunus persica HOM05D000203 ORTHO05D000135 1.9e-06 56.6 57 49.1
Thecc.06G153600 Theobroma cacao HOM05D000203 ORTHO05D000135 1.9e-06 56.6 67 40.3
AT1G65360 Arabidopsis thaliana HOM05D000203 ORTHO05D000135 2.5e-06 56.2 83 38.6
Cfa000969 Carpinus fangiana HOM05D000203 ORTHO05D000135 2.5e-06 56.2 166 28.9
MBI08_g14958_MAGBIO Magnolia biondii HOM05D000203 ORTHO05D000135 2.5e-06 56.2 72 43.1
Nitab4.5_0001030g0170 Nicotiana tabacum HOM05D000203 ORTHO05D000135 2.5e-06 56.2 64 46.9
Nitab4.5_0001932g0030 Nicotiana tabacum HOM05D000203 ORTHO05D000135 2.5e-06 56.2 142 29.6
PSO170G2407 Papaver somniferum HOM05D000203 ORTHO05D000135 2.5e-06 56.2 73 39.7
PSO170G2470 Papaver somniferum HOM05D000203 ORTHO05D000135 2.5e-06 56.2 73 39.7
PSO170G6711 Papaver somniferum HOM05D000203 ORTHO05D000135 2.5e-06 56.2 73 39.7
PSO528G0123 Papaver somniferum HOM05D000203 ORTHO05D000135 2.5e-06 56.2 73 39.7
PGR083G2590 Punica granatum HOM05D000203 ORTHO05D336585 2.5e-06 56.2 143 28.0
BcaC05g27005 Brassica carinata HOM05D000203 ORTHO05D000135 3.3e-06 55.8 138 29.7
C05p28690 Brassica napus HOM05D000203 ORTHO05D000135 3.3e-06 55.8 138 29.7
BolC5t31589H Brassica oleracea HOM05D000203 ORTHO05D000135 3.3e-06 55.8 138 29.7
Ciclev10006958m.g Citrus clementina HOM05D000203 ORTHO05D000135 3.3e-06 55.8 72 41.7
Ciclev10007104m.g Citrus clementina HOM05D000203 ORTHO05D000135 3.3e-06 55.8 57 45.6
Ciclev10024340m.g Citrus clementina HOM05D000203 ORTHO05D000135 3.3e-06 55.8 60 45.0
PSO832G3896 Papaver somniferum HOM05D000203 ORTHO05D012050 3.3e-06 55.8 129 32.6
Prupe.5G243900 Prunus persica HOM05D000203 ORTHO05D000135 3.3e-06 55.8 57 47.4
TPR.G16090 Trifolium pratense HOM05D000203 ORTHO05D000135 3.3e-06 55.8 151 31.1
Nitab4.5_0000146g0060 Nicotiana tabacum HOM05D000203 ORTHO05D000135 4.3e-06 55.5 141 29.1
RcHm_v2.0_Chr5g0004451 Rosa chinensis HOM05D000203 ORTHO05D010688 4.3e-06 55.5 134 29.1
Sp4g16710 Schrenkiella parvula HOM05D000203 ORTHO05D000135 4.3e-06 55.5 147 31.3
PGSC0003DMG400011328 Solanum tuberosum HOM05D000203 ORTHO05D037718 4.3e-06 55.5 62 46.8
Nn4g25572 Nelumbo nucifera HOM05D000203 ORTHO05D000135 5.6e-06 55.1 162 29.0
PSO302G0003 Papaver somniferum HOM05D000203 ORTHO05D000135 5.6e-06 55.1 77 42.9
PSO478G0051 Papaver somniferum HOM05D000203 ORTHO05D000135 5.6e-06 55.1 67 43.3
PSO782G1410 Papaver somniferum HOM05D000203 ORTHO05D000135 5.6e-06 55.1 77 42.9
TAR362G1243 Trochodendron aralioides HOM05D000554 ORTHO05D000860 5.6e-06 55.1 57 49.1
TAR628G1329 Trochodendron aralioides HOM05D000894 ORTHO05D001833 5.6e-06 55.1 154 27.9
HPP92_018777 Vanilla planifolia HOM05D000203 ORTHO05D000135 5.6e-06 55.1 85 36.5
CANSAT56G0232 Cannabis sativa HOM05D000203 ORTHO05D000135 7.3e-06 54.7 67 44.8
Ciclev10006708m.g Citrus clementina HOM05D000203 ORTHO05D000135 7.3e-06 54.7 57 43.9
COL.COLO4_07379 Corchorus olitorius HOM05D000042 ORTHO05D016951 7.3e-06 54.7 68 45.6
Eucgr.E02872 Eucalyptus grandis HOM05D000203 ORTHO05D000135 7.3e-06 54.7 58 46.6
Eucgr.L01236 Eucalyptus grandis HOM05D000203 ORTHO05D000135 7.3e-06 54.7 58 46.6
MD13G1257500 Malus domestica HOM05D000203 ORTHO05D000135 7.3e-06 54.7 57 45.6
PSO541G4057 Papaver somniferum HOM05D000203 ORTHO05D000135 7.3e-06 54.7 141 25.5
PSO782G2245 Papaver somniferum HOM05D000203 ORTHO05D000135 7.3e-06 54.7 77 42.9
PSO832G1432 Papaver somniferum HOM05D000203 ORTHO05D000135 7.3e-06 54.7 67 43.3
QL05p059069 Quercus lobata HOM05D000203 ORTHO05D000135 7.3e-06 54.7 57 45.6
TPR.G24463 Trifolium pratense HOM05D000203 ORTHO05D000135 7.3e-06 54.7 149 31.5
Ciclev10006503m.g Citrus clementina HOM05D000203 ORTHO05D000135 9.6e-06 54.3 57 45.6
Eucgr.D00311 Eucalyptus grandis HOM05D000203 ORTHO05D000135 9.6e-06 54.3 66 43.9
Gohir.D05G271250 Gossypium hirsutum HOM05D000203 ORTHO05D000135 9.6e-06 54.3 66 39.4
PSO170G5937 Papaver somniferum HOM05D000203 ORTHO05D000135 9.6e-06 54.3 73 38.4
PGR142G1651 Punica granatum HOM05D000042 ORTHO05D001427 9.6e-06 54.3 150 29.3
Rhsim11G0144300 Rhododendron simsii HOM05D000042 ORTHO05D001427 9.6e-06 54.3 147 29.3
RcHm_v2.0_Chr5g0013531 Rosa chinensis HOM05D000203 ORTHO05D000135 9.6e-06 54.3 59 45.8
Sabra09G0033000 Salix brachista HOM05D000203 ORTHO05D000135 9.6e-06 54.3 57 42.1
THA.LOC104820707 Tarenaya hassleriana HOM05D000203 ORTHO05D000135 9.6e-06 54.3 75 38.7


User provided reference genes

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