Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 2.3e-166 589.0 326 100.0
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 3.3e-165 585.1 326 99.7
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.3e-164 583.2 326 99.1
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.5e-154 548.1 330 89.7
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.8e-153 545.0 330 89.1
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 1.0e-150 537.0 265 95.1
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 1.4e-144 516.5 319 80.3
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 3.3e-141 505.4 265 87.2
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 5.3e-139 498.0 266 86.1
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 1.6e-138 496.5 266 86.5
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 7.7e-138 494.2 265 85.7
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 1.7e-137 493.0 272 84.6
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.9e-137 492.3 265 86.0
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 5.0e-137 491.5 265 85.7
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 6.5e-137 491.1 265 87.2
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 8.5e-137 490.7 265 85.3
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.5e-136 490.0 265 87.5
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 1.5e-136 490.0 264 86.4
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.9e-136 489.6 265 85.7
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 2.5e-136 489.2 266 84.6
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 3.2e-136 488.8 269 83.3
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 4.2e-136 488.4 263 84.8
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 4.2e-136 488.4 259 86.5
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 9.4e-136 487.3 262 85.5
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.2e-135 486.9 265 85.3
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.2e-135 486.9 266 86.1
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.6e-135 486.5 262 85.9
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 1.6e-135 486.5 264 85.6
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 2.7e-135 485.7 272 84.2
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.6e-135 485.3 272 83.8
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 8.0e-135 484.2 274 82.5
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 1.0e-134 483.8 268 83.6
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.4e-134 483.4 266 83.5
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 1.8e-134 483.0 265 83.8
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 2.3e-134 482.6 264 84.8
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.0e-134 482.3 266 83.5
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 3.0e-134 482.3 265 85.3
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 4.0e-134 481.9 269 82.5
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 4.0e-134 481.9 259 84.9
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 5.2e-134 481.5 264 84.8
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 8.8e-134 480.7 268 82.8
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 1.2e-133 480.3 264 84.8
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 2.0e-133 479.6 272 82.4
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 4.4e-133 478.4 259 83.0
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 5.7e-133 478.0 265 83.4
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 5.7e-133 478.0 263 83.7
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 7.5e-133 477.6 321 72.0
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 9.7e-133 477.2 263 83.3
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 9.7e-133 477.2 259 83.4
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 2.2e-132 476.1 263 82.9
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.8e-132 475.7 270 81.9
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 2.8e-132 475.7 270 81.9
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 3.7e-132 475.3 263 83.3
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 4.8e-132 474.9 265 83.0
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 4.8e-132 474.9 263 82.9
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 6.3e-132 474.6 263 82.9
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 6.3e-132 474.6 268 82.5
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 6.3e-132 474.6 263 83.7
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 8.2e-132 474.2 265 81.9
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 8.2e-132 474.2 268 82.5
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 8.2e-132 474.2 265 82.6
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 8.2e-132 474.2 259 83.8
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.1e-131 473.8 263 84.0
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 1.4e-131 473.4 332 69.9
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.4e-131 473.4 270 81.5
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 3.1e-131 472.2 266 82.0
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 3.1e-131 472.2 271 80.8
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.1e-131 471.9 266 82.0
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 4.1e-131 471.9 264 83.3
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 5.3e-131 471.5 287 78.4
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 7.0e-131 471.1 257 85.2
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 7.0e-131 471.1 270 81.1
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 7.0e-131 471.1 264 83.0
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 7.0e-131 471.1 271 80.4
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 9.1e-131 470.7 265 81.5
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 9.1e-131 470.7 265 83.4
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 9.1e-131 470.7 332 69.6
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 9.1e-131 470.7 332 69.6
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 9.1e-131 470.7 269 80.7
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 1.6e-130 469.9 257 84.0
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.6e-130 469.9 267 80.9
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 2.0e-130 469.5 331 69.8
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 2.7e-130 469.2 263 83.3
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 3.5e-130 468.8 263 82.9
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 5.9e-130 468.0 273 80.2
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 5.9e-130 468.0 262 82.1
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 7.7e-130 467.6 261 82.8
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.0e-129 467.2 263 82.9
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.3e-129 466.8 269 79.2
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 1.3e-129 466.8 265 81.5
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.7e-129 466.5 258 82.9
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.2e-129 466.1 265 81.1
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 2.2e-129 466.1 265 80.0
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 3.8e-129 465.3 266 81.2
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 3.8e-129 465.3 242 88.0
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.9e-128 463.0 266 80.5
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 2.5e-128 462.6 263 80.6
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 2.5e-128 462.6 263 80.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 3.2e-128 462.2 330 69.1
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.2e-128 462.2 261 81.2
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 7.2e-128 461.1 265 80.0
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 7.2e-128 461.1 266 80.8
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 2.1e-127 459.5 264 80.7
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 2.1e-127 459.5 264 80.7
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 2.7e-127 459.1 324 68.8
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 3.6e-127 458.8 266 80.1
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 6.1e-127 458.0 324 69.8
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 1.8e-126 456.4 267 79.8
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 2.3e-126 456.1 242 87.2
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 6.8e-126 454.5 324 68.5
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.5e-125 453.4 266 79.7
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 2.6e-125 452.6 258 81.4
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 1.4e-123 446.8 270 76.7
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 1.4e-123 446.8 270 76.7
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 3.1e-123 445.7 233 88.4
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 1.2e-119 433.7 265 72.5
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 3.0e-118 429.1 271 74.9
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 8.8e-118 427.6 260 77.7
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 1.5e-117 426.8 264 75.8
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 1.5e-117 426.8 261 80.5
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 4.4e-117 425.2 266 75.2
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 4.1e-115 418.7 221 87.3
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 3.5e-114 415.6 215 87.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 1.0e-113 414.1 217 85.7
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 5.0e-113 411.8 221 86.0
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 5.6e-112 408.3 214 87.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 5.6e-112 408.3 220 85.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.5e-109 400.2 269 70.3
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 7.5e-109 397.9 208 88.5
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.1e-107 392.1 274 68.6
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 1.7e-105 386.7 267 70.0
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 8.9e-102 374.4 231 76.6
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 3.7e-100 369.0 215 76.7
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 1.5e-96 357.1 265 63.0
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 1.9e-91 340.1 271 61.3
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 1.2e-82 310.8 275 55.6
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 4.3e-80 302.4 163 83.4
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 2.6e-77 293.1 152 87.5
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 5.8e-77 292.0 169 81.7
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 5.1e-73 278.9 218 64.7
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 2.1e-71 273.5 176 73.3
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 4.5e-69 265.8 149 81.2
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 2.4e-67 260.0 208 63.9
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.6e-66 257.3 142 83.8
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 2.8e-63 246.5 145 78.6
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 3.0e-57 226.5 126 81.7
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 1.7e-52 210.7 147 67.3
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 5.7e-40 169.1 136 63.2
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 7.7e-21 105.5 83 65.1
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 4.1e-14 83.2 47 83.0
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 4.5e-13 79.7 49 69.4
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 1.3e-12 78.2 112 44.6
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 2.2e-12 77.4 48 75.0


User provided reference genes

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