Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 2.9e-143 511.9 261 100.0
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 5.4e-142 507.7 261 98.5
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 1.2e-141 506.5 261 98.1
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 2.1e-138 495.7 261 95.4
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 5.2e-137 491.1 261 95.0
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 5.4e-134 481.1 261 93.1
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 7.8e-125 450.7 262 89.7
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 3.0e-124 448.7 259 84.9
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 3.9e-124 448.4 260 85.8
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.1e-123 446.8 260 84.2
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.1e-123 446.8 260 84.6
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 1.5e-123 446.4 259 82.6
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.5e-123 446.4 260 85.0
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 2.5e-123 445.7 259 83.4
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 1.2e-122 443.4 259 83.8
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.6e-122 443.0 259 83.0
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 3.6e-122 441.8 260 83.5
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 4.7e-122 441.4 260 83.5
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 4.7e-122 441.4 259 83.0
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.1e-121 440.3 260 83.1
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.1e-121 440.3 260 83.1
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.8e-121 439.5 276 80.1
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.4e-121 439.1 260 82.3
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.2e-121 438.0 260 82.3
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 5.2e-121 438.0 259 82.6
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 6.8e-121 437.6 259 81.1
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 8.9e-121 437.2 260 81.9
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.0e-120 436.0 260 81.9
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.0e-120 436.0 259 82.2
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.4e-120 435.3 259 82.6
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 5.8e-120 434.5 259 81.5
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 5.8e-120 434.5 259 81.9
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 5.8e-120 434.5 260 81.5
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 1.3e-119 433.3 259 81.5
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.3e-119 433.3 258 81.4
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.7e-119 433.0 259 81.9
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 2.9e-119 432.2 258 82.6
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.9e-119 432.2 259 80.7
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 4.9e-119 431.4 259 82.6
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 4.9e-119 431.4 259 80.7
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 1.9e-118 429.5 259 79.9
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 2.4e-118 429.1 259 80.3
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 3.2e-118 428.7 259 79.9
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 7.1e-118 427.6 259 79.9
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 1.2e-117 426.8 259 81.9
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 1.2e-117 426.8 259 80.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.6e-117 426.4 259 80.3
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.6e-117 426.4 259 80.3
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.1e-117 426.0 258 80.2
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.7e-117 425.6 259 81.5
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 2.7e-117 425.6 259 79.2
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.5e-117 425.2 256 80.5
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 3.5e-117 425.2 259 79.9
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 6.0e-117 424.5 259 79.5
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 6.0e-117 424.5 259 79.9
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.0e-116 423.7 259 79.9
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 1.0e-116 423.7 260 80.4
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.3e-116 423.3 259 78.8
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.3e-116 423.3 259 79.9
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.7e-116 422.9 259 81.5
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.7e-116 422.9 258 80.2
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 2.3e-116 422.5 259 79.9
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 3.0e-116 422.2 259 79.5
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 3.9e-116 421.8 259 78.8
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 3.9e-116 421.8 259 78.8
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 3.9e-116 421.8 259 78.8
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 5.1e-116 421.4 260 80.8
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 8.7e-116 420.6 259 80.3
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 8.7e-116 420.6 262 78.2
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 8.7e-116 420.6 259 79.2
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 8.7e-116 420.6 262 78.6
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 8.7e-116 420.6 259 78.4
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.5e-115 419.9 262 78.6
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.5e-115 419.9 259 79.2
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.9e-115 419.5 262 77.9
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 2.5e-115 419.1 263 77.9
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.5e-115 419.1 259 79.2
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 4.3e-115 418.3 262 77.1
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 5.6e-115 417.9 263 77.9
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 5.6e-115 417.9 263 77.9
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 7.3e-115 417.5 259 78.4
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 7.3e-115 417.5 259 78.4
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 9.6e-115 417.2 263 77.9
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 9.6e-115 417.2 262 77.5
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.6e-114 416.4 262 77.1
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.6e-114 416.4 258 77.9
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.1e-114 416.0 262 77.5
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 4.8e-114 414.8 259 77.6
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 6.2e-114 414.5 264 77.7
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 1.1e-113 413.7 262 77.1
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.4e-113 413.3 260 76.9
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.4e-113 413.3 259 77.6
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 6.9e-113 411.0 262 76.7
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.2e-112 410.2 259 78.4
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 5.8e-112 407.9 258 77.1
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 7.6e-112 407.5 258 77.1
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 9.9e-112 407.1 259 76.4
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.3e-111 406.8 262 76.0
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.7e-111 406.4 277 72.9
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 2.9e-111 405.6 263 74.5
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 3.8e-111 405.2 259 73.4
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.8e-111 405.2 263 75.3
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.9e-111 404.8 260 76.2
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 4.9e-111 404.8 260 75.8
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 8.4e-111 404.1 260 75.4
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 3.2e-110 402.1 261 74.7
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 7.1e-110 401.0 279 72.4
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 1.6e-109 399.8 259 75.3
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 2.7e-109 399.1 294 70.1
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 3.5e-109 398.7 263 74.9
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 2.3e-108 396.0 257 75.1
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 4.3e-107 391.7 258 73.6
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 7.3e-107 391.0 266 72.2
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 9.6e-107 390.6 304 66.4
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 1.6e-106 389.8 259 71.8
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 3.4e-104 382.1 259 71.0
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.7e-103 379.8 259 70.7
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 4.0e-97 358.6 299 62.9
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 6.9e-97 357.8 258 65.1
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 4.5e-96 355.1 208 81.2
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 1.7e-95 353.2 200 84.0
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 4.9e-95 351.7 268 69.0
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.4e-94 350.1 259 69.1
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.1e-93 346.3 259 66.8
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 3.0e-92 342.4 219 75.8
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 9.6e-91 337.4 199 81.9
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 5.0e-87 325.1 259 60.6
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 9.3e-86 320.9 259 63.7
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.3e-84 316.2 255 60.0
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 1.9e-83 313.2 257 57.2
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 8.2e-82 307.8 243 65.8
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 5.9e-80 301.6 467 41.3
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.3e-79 300.4 260 63.1
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.4e-76 290.4 168 81.0
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.9e-76 288.9 168 81.0
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.2e-74 283.1 242 62.4
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.9e-70 270.0 256 51.2
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 9.1e-65 251.1 154 79.2
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.3e-59 232.6 205 54.6
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 1.2e-48 197.6 253 41.5
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 1.1e-46 191.0 258 40.3
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 5.2e-44 182.2 160 55.6
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 1.2e-43 181.0 200 50.0
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.2e-37 161.0 196 47.4
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.1e-33 146.0 84 82.1
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.0e-23 114.8 82 69.5
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 7.3e-22 108.6 218 29.4
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 2.8e-21 106.7 60 83.3
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.4e-20 104.4 87 60.9
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.3e-18 97.8 161 38.5
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 4.9e-18 95.9 107 40.2
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 1.9e-17 94.0 86 57.0
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.2e-11 74.7 44 79.5
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 1.7e-10 70.9 53 67.9
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 3.0e-07 60.1 36 77.8


User provided reference genes

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