Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g097490.1 Solanum lycopersicum HOM05D000585 ORTHO05D003019 4.4e-136 488.0 259 100.0
Sopen01g041150 Solanum pennellii HOM05D000585 ORTHO05D003019 5.4e-134 481.1 259 98.5
PGSC0003DMG400019447 Solanum tuberosum HOM05D000585 ORTHO05D003019 5.2e-129 464.5 259 94.6
CAN.G134.111 Capsicum annuum HOM05D000585 ORTHO05D003019 1.5e-107 393.3 259 82.2
Nitab4.5_0004469g0050 Nicotiana tabacum HOM05D000585 ORTHO05D003019 6.4e-103 377.9 251 82.5
Nitab4.5_0005582g0020 Nicotiana tabacum HOM05D000585 ORTHO05D003019 7.1e-102 374.4 251 80.9
Peaxi162Scf01150g00023 Petunia axillaris HOM05D000585 ORTHO05D003019 1.6e-98 363.2 254 78.7
Cc03_g04190 Coffea canephora HOM05D000585 ORTHO05D003019 4.4e-19 99.4 264 31.1
CAN.G1402.14 Capsicum annuum HOM05D000585 ORTHO05D003019 4.8e-18 95.9 261 30.3
SalBow8G4632 Salvia bowleyana HOM05D000585 ORTHO05D003019 6.3e-18 95.5 258 33.7
Eucgr.H04381 Eucalyptus grandis HOM05D000585 ORTHO05D003019 1.1e-17 94.7 263 33.8
TAR636G3099 Trochodendron aralioides HOM05D000585 ORTHO05D003019 1.4e-17 94.4 266 33.1
Dinv14037 Davidia involucrata HOM05D000585 ORTHO05D003019 3.1e-17 93.2 266 30.8
MBI11_g04238_MAGBIO Magnolia biondii HOM05D000585 ORTHO05D003019 3.1e-17 93.2 271 33.9
Duzib052G0772 Durio zibethinus HOM05D000585 ORTHO05D003019 1.6e-16 90.9 268 30.2
Haze_04343 Corylus avellana HOM05D000585 ORTHO05D003019 4.5e-16 89.4 266 32.0
Potri.010G082600 Populus trichocarpa HOM05D000585 ORTHO05D003019 7.7e-16 88.6 269 29.4
Nitab4.5_0005470g0010 Nicotiana tabacum HOM05D000585 ORTHO05D003019 1.0e-15 88.2 209 34.0
DCAR_030682 Daucus carota HOM05D000585 ORTHO05D003019 2.3e-15 87.0 265 33.2
Duzib212G0580 Durio zibethinus HOM05D000585 ORTHO05D003019 5.0e-15 85.9 270 30.4
Manes.15G032200 Manihot esculenta HOM05D000585 ORTHO05D003019 6.6e-15 85.5 273 31.5
Ciclev10004919m.g Citrus clementina HOM05D000585 ORTHO05D003019 8.6e-15 85.1 274 30.7
Peaxi162Scf00316g01115 Petunia axillaris HOM05D000585 ORTHO05D003019 8.6e-15 85.1 253 29.6
Haze_11226 Corylus avellana HOM05D000585 ORTHO05D003019 1.1e-14 84.7 269 31.2
Cc00_g32250 Coffea canephora HOM05D000585 ORTHO05D003019 1.5e-14 84.3 258 30.6
Manes.08G132400 Manihot esculenta HOM05D000585 ORTHO05D003019 1.5e-14 84.3 258 31.4
PGR142G1588 Punica granatum HOM05D000585 ORTHO05D003019 1.5e-14 84.3 269 31.2
Thecc.04G237400 Theobroma cacao HOM05D000585 ORTHO05D003019 1.5e-14 84.3 272 29.8
Nitab4.5_0000085g0220 Nicotiana tabacum HOM05D000585 ORTHO05D003019 1.9e-14 84.0 209 33.5
Oeu053307.1 Olea europaea HOM05D000585 ORTHO05D003019 1.9e-14 84.0 263 30.0
QL06p001313 Quercus lobata HOM05D000585 ORTHO05D003019 1.9e-14 84.0 270 31.5
GSVIVG01018029001 Vitis vinifera HOM05D000585 ORTHO05D003019 3.3e-14 83.2 257 30.4
Cpa.g.sc44.113 Carica papaya HOM05D000585 ORTHO05D003019 4.2e-14 82.8 265 31.7
TWI56G0144 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 4.2e-14 82.8 253 30.4
CiPaw.01G196600 Carya illinoinensis HOM05D000585 ORTHO05D003019 5.5e-14 82.4 269 29.7
TWI09G0946 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 5.5e-14 82.4 274 30.3
QL03p024963 Quercus lobata HOM05D000585 ORTHO05D003019 7.2e-14 82.0 269 31.6
Sabra08G0119300 Salix brachista HOM05D000585 ORTHO05D003019 1.2e-13 81.3 270 30.7
MSTRG.9956 Avicennia marina HOM05D000585 ORTHO05D003019 1.6e-13 80.9 269 31.6
Nn6g34148 Nelumbo nucifera HOM05D000585 ORTHO05D003019 2.1e-13 80.5 268 29.5
TAR365G0441 Trochodendron aralioides HOM05D000585 ORTHO05D003019 2.8e-13 80.1 271 30.3
MSTRG.4056 Avicennia marina HOM05D000585 ORTHO05D003019 4.7e-13 79.3 274 29.6
Ciclev10003890m.g Citrus clementina HOM05D000585 ORTHO05D003019 4.7e-13 79.3 266 29.7
CsaV3_3G012950 Cucumis sativus L. HOM05D000585 ORTHO05D003019 6.1e-13 79.0 264 28.8
Lj5g0007146 Lotus japonicus HOM05D000585 ORTHO05D003019 6.1e-13 79.0 275 30.5
TAR362G0507 Trochodendron aralioides HOM05D000585 ORTHO05D003019 6.1e-13 79.0 268 28.7
Cfa008456 Carpinus fangiana HOM05D000585 ORTHO05D003019 1.4e-12 77.8 264 28.8
Solyc09g082560.4 Solanum lycopersicum HOM05D000585 ORTHO05D003019 1.4e-12 77.8 271 29.2
Sopen09g031420 Solanum pennellii HOM05D000585 ORTHO05D003019 1.4e-12 77.8 271 29.2
Oeu008863.2 Olea europaea HOM05D000585 ORTHO05D003019 1.8e-12 77.4 254 28.7
Migut.B01077 Erythranthe guttata HOM05D000585 ORTHO05D003019 2.3e-12 77.0 245 30.6
Potri.008G156700 Populus trichocarpa HOM05D000585 ORTHO05D003019 2.3e-12 77.0 270 28.1
Aqoxy2G03447 Aquilegia oxysepala HOM05D000585 ORTHO05D003019 3.0e-12 76.6 271 28.0
Lj3A729T49 Lonicera japonica HOM05D000585 ORTHO05D003019 4.0e-12 76.3 261 29.5
Actinidia05770 Actinidia chinensis HOM05D000585 ORTHO05D003019 6.8e-12 75.5 256 32.0
Actinidia08468 Actinidia chinensis HOM05D000585 ORTHO05D003019 6.8e-12 75.5 267 29.2
FvH4_4g01000 Fragaria vesca HOM05D000585 ORTHO05D003019 6.8e-12 75.5 275 29.1
Sabra10G0060500 Salix brachista HOM05D000585 ORTHO05D003019 6.8e-12 75.5 270 29.3
FAN12G2946 Fragaria x ananassa HOM05D000585 ORTHO05D003019 8.9e-12 75.1 275 29.1
COL.COLO4_21550 Corchorus olitorius HOM05D000585 ORTHO05D003019 1.2e-11 74.7 275 29.5
Glyma.10G245000 Glycine max HOM05D000585 ORTHO05D003019 1.2e-11 74.7 272 31.2
Lalb_Chr03g0037411 Lupinus albus HOM05D000585 ORTHO05D003019 1.2e-11 74.7 274 29.6
Prupe.1G020000 Prunus persica HOM05D000585 ORTHO05D003019 1.5e-11 74.3 275 29.1
Atru.chr4.2377 Acer truncatum HOM05D000585 ORTHO05D003019 2.0e-11 73.9 271 30.3
Actinidia18531 Actinidia chinensis HOM05D000585 ORTHO05D003019 2.0e-11 73.9 266 28.9
AUR62034701 Chenopodium quinoa HOM05D000585 ORTHO05D003019 2.6e-11 73.6 268 26.5
MELO3C006504.2 Cucumis melo HOM05D000585 ORTHO05D003019 2.6e-11 73.6 258 28.7
Phvul.007G277500 Phaseolus vulgaris HOM05D000585 ORTHO05D003019 2.6e-11 73.6 226 29.2
EL10Ac3g06460 Beta vulgaris HOM05D000585 ORTHO05D003019 4.4e-11 72.8 267 26.2
Ah.01g018370 Amaranthus hybridus HOM05D000585 ORTHO05D003019 5.7e-11 72.4 253 29.6
CiPaw.02G121900 Carya illinoinensis HOM05D000585 ORTHO05D003019 5.7e-11 72.4 218 32.6
MBI11_g35088_MAGBIO Magnolia biondii HOM05D000585 ORTHO05D003019 5.7e-11 72.4 215 32.1
Atru.chr4.2401 Acer truncatum HOM05D000585 ORTHO05D003019 7.5e-11 72.0 270 29.6
Cpa.g.sc117.73 Carica papaya HOM05D000585 ORTHO05D003019 7.5e-11 72.0 264 28.4
Cc00_g25100 Coffea canephora HOM05D000585 ORTHO05D003019 7.5e-11 72.0 267 27.3
MD04G1222100 Malus domestica HOM05D000585 ORTHO05D003019 7.5e-11 72.0 260 28.1
ClCG05G004910 Citrullus lanatus HOM05D000585 ORTHO05D003019 9.8e-11 71.6 264 28.8
FAN17G1106 Fragaria x ananassa HOM05D000585 ORTHO05D003019 9.8e-11 71.6 275 29.5
TWI73G1076 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 9.8e-11 71.6 270 28.5
VMungo0720G1515 Vigna mungo HOM05D000585 ORTHO05D003019 9.8e-11 71.6 213 31.9
FAN22G2234 Fragaria x ananassa HOM05D000585 ORTHO05D003019 1.3e-10 71.2 274 28.8
RcHm_v2.0_Chr4g0387551 Rosa chinensis HOM05D000585 ORTHO05D003019 1.3e-10 71.2 275 29.1
Sed0022543 Sechium edule HOM05D000585 ORTHO05D003019 1.3e-10 71.2 252 29.8
TWI12G1426 Tripterygium wilfordii HOM05D000585 ORTHO05D003019 1.3e-10 71.2 258 30.2
Phvul.007G060900 Phaseolus vulgaris HOM05D000585 ORTHO05D003019 1.7e-10 70.9 265 29.4
Eucgr.B00932 Eucalyptus grandis HOM05D000585 ORTHO05D003019 2.8e-10 70.1 264 28.8
Eucgr.B01029 Eucalyptus grandis HOM05D000585 ORTHO05D003019 2.8e-10 70.1 264 28.8
MD16G1198400 Malus domestica HOM05D000585 ORTHO05D003019 2.8e-10 70.1 273 30.0
Manes.03G173900 Manihot esculenta HOM05D000585 ORTHO05D003019 2.8e-10 70.1 267 27.7
Potri.005G051500 Populus trichocarpa HOM05D000585 ORTHO05D003019 2.8e-10 70.1 259 28.6
PGR004G0878 Punica granatum HOM05D000585 ORTHO05D003019 4.9e-10 69.3 262 30.5
Sc13g0004650 Simmondsia chinensis HOM05D000585 ORTHO05D003019 4.9e-10 69.3 214 29.4
Thecc.05G287200 Theobroma cacao HOM05D000585 ORTHO05D003019 4.9e-10 69.3 256 27.7
GSVIVG01021830001 Vitis vinifera HOM05D000585 ORTHO05D003019 4.9e-10 69.3 256 28.1
Hund12091 Selenicereus undatus HOM05D000585 ORTHO05D003019 6.3e-10 68.9 257 29.6
Potri.013G038901 Populus trichocarpa HOM05D000585 ORTHO05D003019 1.1e-09 68.2 250 29.6
TPR.G26099 Trifolium pratense HOM05D000585 ORTHO05D003019 1.4e-09 67.8 268 29.5
Duzib151G0899 Durio zibethinus HOM05D000585 ORTHO05D003019 1.8e-09 67.4 211 30.3
PSO170G4407 Papaver somniferum HOM05D000585 ORTHO05D003019 1.8e-09 67.4 276 29.7
unitig_748.g8331 Utricularia gibba HOM05D000585 ORTHO05D003019 1.8e-09 67.4 219 32.4
MD13G1198300 Malus domestica HOM05D000585 ORTHO05D003019 2.4e-09 67.0 273 28.9
Cc02_g31870 Coffea canephora HOM05D000585 ORTHO05D003019 3.2e-09 66.6 288 27.4
PSO210G2806 Papaver somniferum HOM05D000585 ORTHO05D003019 3.2e-09 66.6 277 29.2
PGSC0003DMG400006444 Solanum tuberosum HOM05D000585 ORTHO05D003019 3.2e-09 66.6 251 27.9
TPR.G25172 Trifolium pratense HOM05D000585 ORTHO05D003019 3.2e-09 66.6 269 28.6
CDE06G1490 Ceratophyllum demersum HOM05D000585 ORTHO05D003019 4.1e-09 66.2 266 28.2
COL.COLO4_15300 Corchorus olitorius HOM05D000585 ORTHO05D003019 4.1e-09 66.2 247 30.8
Psat6g205440 Pisum sativum HOM05D000585 ORTHO05D003019 4.1e-09 66.2 265 29.1
CsaV3_2G004260 Cucumis sativus L. HOM05D000585 ORTHO05D003019 5.4e-09 65.9 257 29.6
DCAR_025317 Daucus carota HOM05D000585 ORTHO05D003019 7.0e-09 65.5 262 30.2
Glyma.20G149600 Glycine max HOM05D000585 ORTHO05D003019 9.2e-09 65.1 268 28.4
Ca_10859_v3 Cicer arietinum L. HOM05D000585 ORTHO05D003019 1.2e-08 64.7 265 29.1
Hma1.2p1_0902F.1_g234750 Hydrangea macrophylla HOM05D000585 ORTHO05D003019 1.2e-08 64.7 265 29.4
Medtr1g103070 Medicago truncatula HOM05D000585 ORTHO05D003019 1.2e-08 64.7 265 28.3
CSS0041457 Camellia sinensis var. sinensis HOM05D000585 ORTHO05D003019 1.6e-08 64.3 270 27.4
AUR62043724 Chenopodium quinoa HOM05D000585 ORTHO05D003019 1.6e-08 64.3 261 26.1
ATR0665G458 Amborella trichopoda HOM05D000585 ORTHO05D003019 2.7e-08 63.5 238 31.9
CSS0004802 Camellia sinensis var. sinensis HOM05D000585 ORTHO05D003019 2.7e-08 63.5 269 27.5
MELO3C004368.2 Cucumis melo HOM05D000585 ORTHO05D003019 3.5e-08 63.2 255 28.6
Lalb_Chr18g0045001 Lupinus albus HOM05D000585 ORTHO05D003019 3.5e-08 63.2 245 29.4
Sed0011299 Sechium edule HOM05D000585 ORTHO05D003019 3.5e-08 63.2 257 30.0
VMungo0720G0766 Vigna mungo HOM05D000585 ORTHO05D003019 4.5e-08 62.8 232 28.9
Psat6g104080 Pisum sativum HOM05D000585 ORTHO05D003019 5.9e-08 62.4 268 28.4
RcHm_v2.0_Chr3g0451751 Rosa chinensis HOM05D000585 ORTHO05D003019 5.9e-08 62.4 252 31.3
CANSAT54G1360 Cannabis sativa HOM05D000585 ORTHO05D003019 7.8e-08 62.0 253 30.8
unitig_748.g7304 Utricularia gibba HOM05D000585 ORTHO05D003019 7.8e-08 62.0 208 28.8
CSS0013848 Camellia sinensis var. sinensis HOM05D000585 ORTHO05D003019 1.3e-07 61.2 269 26.8
Rhsim02G0028400 Rhododendron simsii HOM05D000585 ORTHO05D003019 1.3e-07 61.2 279 26.5
Medtr1g041430 Medicago truncatula HOM05D000585 ORTHO05D003019 1.7e-07 60.8 215 30.7
CANSAT78G1820 Cannabis sativa HOM05D000585 ORTHO05D003019 2.3e-07 60.5 285 27.7
FAN09G4130 Fragaria x ananassa HOM05D000585 ORTHO05D003019 2.3e-07 60.5 250 29.6
arahy.Tifrunner.gnm1.ann1.F73KQI Arachis hypogaea HOM05D000585 ORTHO05D003019 2.9e-07 60.1 259 27.4
arahy.Tifrunner.gnm1.ann1.MLEZ7Y Arachis hypogaea HOM05D000585 ORTHO05D003019 2.9e-07 60.1 259 27.4
FAN02G1864 Fragaria x ananassa HOM05D000585 ORTHO05D003019 2.9e-07 60.1 250 30.0
Glyma.02G004600 Glycine max HOM05D000585 ORTHO05D003019 5.0e-07 59.3 232 28.4
Ca_12152_v3 Cicer arietinum L. HOM05D000585 ORTHO05D003019 8.6e-07 58.5 275 28.0
Duzib177G0969 Durio zibethinus HOM05D000585 ORTHO05D003019 1.9e-06 57.4 260 28.5
ClCG02G016510 Citrullus lanatus HOM05D000585 ORTHO05D003019 3.3e-06 56.6 240 27.9
Prupe.6G341200 Prunus persica HOM05D000585 ORTHO05D003019 3.3e-06 56.6 247 24.7
SalBow2G3221 Salvia bowleyana HOM05D000585 ORTHO05D003019 4.3e-06 56.2 264 26.5


User provided reference genes

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