Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 2889.4 1501 100.0
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 2846.6 1502 98.4
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 2486.8 1535 84.6
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 2409.4 1543 81.9
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 2409.0 1541 82.1
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1672.5 1514 59.3
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1666.4 1448 60.4
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1632.1 1458 59.7
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1625.5 1512 57.8
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1598.9 1511 57.9
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1597.4 1514 58.1
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1589.3 1483 57.3
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1588.2 1496 56.8
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1587.0 1511 57.0
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1580.1 1495 56.9
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1576.6 1510 57.3
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1573.9 1429 58.5
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1570.8 1494 57.0
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1567.0 1495 57.0
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1546.6 1455 57.6
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1538.9 1429 57.5
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1533.9 1560 55.0
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1533.1 1477 55.6
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1530.4 1539 54.5
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1521.1 1426 57.6
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1521.1 1471 56.8
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1520.0 1509 54.6
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1518.8 1471 57.0
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1512.7 1511 54.0
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1501.1 1525 53.9
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1488.4 1457 55.7
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1487.6 1508 54.8
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1485.7 1582 52.7
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1479.5 1379 58.2
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1471.8 1508 53.4
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1452.6 1401 55.7
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1446.0 1496 53.0
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1444.9 1407 55.6
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1443.3 1486 53.5
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1420.6 1446 52.9
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1389.4 1480 52.5
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 1389.0 1476 52.6
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1384.4 1454 53.2
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1377.1 1444 52.4
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 1370.5 1477 52.2
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 1370.5 1435 52.7
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 1365.9 1464 51.6
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 1365.5 1436 52.5
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1355.5 1218 59.4
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 1355.1 1446 51.7
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1337.4 1527 48.7
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1334.7 1360 55.0
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 1326.6 1465 50.6
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1286.9 1332 53.4
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 0.0e+00 1195.3 1273 53.0
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1113.2 1482 45.1
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 2.3e-293 1013.1 825 65.1
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 5.1e-285 985.3 968 56.0
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 3.6e-283 979.2 1265 44.2
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 8.4e-280 968.0 1231 45.5
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 1.4e-274 950.7 968 54.6
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 1.6e-270 937.2 1485 40.3
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 1.9e-268 930.2 545 88.6
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 2.5e-268 929.9 1050 47.9
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 7.9e-262 908.3 1492 38.5
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.3e-253 880.9 908 54.6
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 6.5e-248 862.1 673 73.3
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 1.2e-217 761.5 554 70.2
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 1.6e-206 724.5 1199 38.3
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 3.9e-192 676.8 679 52.1
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 2.3e-181 641.0 619 56.1
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 4.5e-156 557.0 964 35.8
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 8.4e-147 526.2 732 42.2
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.7e-136 490.0 415 59.5
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.0e-67 263.5 197 68.5
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 7.1e-61 240.7 254 53.5
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.8e-56 226.1 194 59.3
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 2.1e-49 202.6 265 45.3
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.1e-48 200.3 311 41.5
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.9e-45 189.5 136 68.4
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 4.6e-44 184.9 237 42.2
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.6e-43 181.0 141 63.8
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 1.3e-38 166.8 149 57.0
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 2.9e-38 165.6 125 64.8
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 3.5e-36 158.7 124 62.9
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 1.8e-27 129.8 209 35.4
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 1.4e-24 120.2 105 61.0
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 2.7e-20 105.9 105 50.5
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 2.7e-20 105.9 105 50.5
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 7.9e-20 104.4 105 49.5
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 9.7e-18 97.4 88 56.8
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 2.8e-17 95.9 194 36.6
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 4.5e-15 88.6 142 39.4
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 5.9e-15 88.2 51 86.3
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 1.3e-14 87.0 69 62.3
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 1.1e-13 84.0 98 46.9
Cre10.g453650 Chlamydomonas reinhardtii HOM05D007170 ORTHO05D009243 1.0e-11 77.4 259 27.0
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 1.8e-11 76.6 302 23.5
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 4.3e-10 72.0 40 85.0
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 7.4e-10 71.2 111 37.8
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 5.3e-08 65.1 51 60.8
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 6.9e-08 64.7 121 39.7
Nitab4.5_0001990g0020 Nicotiana tabacum HOM05D002374 ORTHO05D004738 2.0e-07 63.2 79 50.6
CDE07G0977 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 5.9e-07 61.6 64 50.0


User provided reference genes

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