Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 7.2e-303 1043.1 525 100.0
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 8.2e-299 1029.6 528 98.7
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 1.0e-293 1012.7 526 97.1
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 1.6e-262 909.1 536 85.1
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 2.8e-262 908.3 525 85.9
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 6.8e-261 903.7 533 85.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 2.3e-240 835.5 533 78.6
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.3e-232 809.7 532 76.5
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 2.3e-232 808.9 519 77.3
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 3.0e-232 808.5 533 75.4
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 4.7e-230 801.2 533 76.7
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.4e-226 788.9 515 76.5
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 2.4e-226 788.9 527 75.0
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 1.2e-225 786.6 519 76.1
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.2e-225 786.6 533 75.0
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.5e-223 778.9 525 74.7
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 3.3e-223 778.5 521 73.5
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 7.3e-223 777.3 519 74.6
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.6e-222 776.2 516 75.4
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 2.1e-222 775.8 526 73.4
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.6e-222 775.0 535 73.5
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 1.1e-221 773.5 530 73.4
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 1.8e-221 772.7 527 74.0
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 5.3e-221 771.2 507 75.3
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.2e-220 770.0 512 75.2
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 1.2e-220 770.0 527 73.8
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 1.2e-220 770.0 516 75.2
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 1.5e-220 769.6 519 75.0
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 2.0e-220 769.2 530 72.8
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 9.9e-220 766.9 530 73.0
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 2.9e-219 765.4 532 71.8
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 3.8e-219 765.0 519 73.2
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 4.9e-219 764.6 480 78.3
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 4.9e-219 764.6 532 71.8
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 1.9e-218 762.7 527 73.4
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 2.4e-218 762.3 512 74.8
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 3.2e-218 761.9 515 75.3
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 9.3e-218 760.4 512 74.8
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.2e-217 760.0 512 74.6
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.6e-217 759.6 533 73.2
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 2.1e-217 759.2 526 73.4
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 3.5e-217 758.4 523 73.4
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 3.5e-217 758.4 524 72.9
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 4.6e-217 758.1 529 73.0
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 6.0e-217 757.7 524 72.7
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 7.9e-217 757.3 527 72.5
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 7.9e-217 757.3 530 71.5
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 1.0e-216 756.9 489 75.3
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.3e-216 756.5 517 74.3
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 3.0e-216 755.4 512 74.2
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 6.6e-216 754.2 534 71.7
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 3.3e-215 751.9 533 72.2
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 5.6e-215 751.1 526 72.1
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 1.3e-214 750.0 528 70.6
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 1.6e-214 749.6 526 72.1
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 3.6e-214 748.4 489 74.6
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 4.8e-214 748.0 527 72.1
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.2e-214 747.7 524 72.3
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 8.1e-214 747.3 530 72.5
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 3.1e-213 745.3 523 71.3
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 4.0e-213 745.0 534 70.2
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 2.6e-212 742.3 531 70.6
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 3.4e-212 741.9 526 71.3
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 7.6e-212 740.7 530 70.6
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 1.3e-211 740.0 530 70.4
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.2e-210 735.3 531 71.0
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 3.2e-210 735.3 527 71.2
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 7.1e-210 734.2 613 63.6
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 7.1e-210 734.2 519 71.1
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 2.7e-209 732.3 534 69.1
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 1.3e-208 729.9 524 69.7
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 3.0e-208 728.8 526 69.8
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 5.1e-208 728.0 518 71.0
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 6.7e-208 727.6 469 74.8
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 1.9e-207 726.1 487 74.1
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 1.9e-207 726.1 527 70.2
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 7.4e-207 724.2 528 70.5
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 9.6e-207 723.8 517 70.6
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 9.6e-207 723.8 521 69.7
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 2.1e-206 722.6 528 69.9
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 6.2e-206 721.1 495 74.5
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 4.0e-205 718.4 523 69.2
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 1.2e-204 716.8 526 68.6
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 2.6e-204 715.7 516 70.7
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 1.7e-203 713.0 531 69.7
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 3.8e-203 711.8 514 70.0
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 3.8e-203 711.8 487 72.7
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 3.8e-203 711.8 517 69.6
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 3.2e-202 708.8 461 74.8
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 4.2e-202 708.4 506 70.4
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 4.2e-202 708.4 516 70.0
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 7.1e-202 707.6 483 72.9
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 9.3e-202 707.2 531 67.2
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 1.6e-201 706.4 534 66.3
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 2.7e-201 705.7 531 67.6
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 4.6e-201 704.9 525 67.6
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.0e-200 703.7 555 65.4
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 1.8e-200 703.0 483 72.7
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 3.0e-200 702.2 533 67.5
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 3.9e-200 701.8 513 69.2
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 5.1e-200 701.4 534 68.2
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 1.9e-199 699.5 513 68.4
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 3.3e-199 698.7 513 68.8
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 5.7e-199 698.0 533 67.2
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 7.4e-199 697.6 513 68.8
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 1.4e-197 693.3 513 69.0
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 2.6e-196 689.1 489 71.8
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 7.6e-196 687.6 527 66.6
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.0e-195 687.2 515 68.7
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.0e-195 687.2 519 66.9
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.0e-195 687.2 519 66.9
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.3e-195 686.8 516 67.8
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.1e-191 673.7 526 69.2
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 9.7e-191 670.6 406 77.6
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 9.7e-191 670.6 537 65.7
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.6e-190 669.8 516 68.2
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 1.4e-189 666.8 489 69.7
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 4.5e-180 635.2 476 67.6
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 4.5e-180 635.2 540 62.6
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 5.5e-178 628.2 402 74.4
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 3.0e-176 622.5 540 61.5
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 5.7e-175 618.2 535 60.2
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 5.9e-164 581.6 527 58.6
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 5.0e-163 578.6 495 60.4
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 5.9e-156 555.1 529 56.5
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 4.0e-152 542.3 542 54.8
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 2.0e-151 540.0 526 58.2
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 5.7e-151 538.5 503 57.9
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 6.6e-147 525.0 408 67.4
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 8.6e-147 524.6 537 53.4
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 5.4e-141 505.4 347 74.9
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 3.5e-140 502.7 429 62.5
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.0e-136 491.1 354 70.6
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 6.4e-134 481.9 493 52.1
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 7.3e-130 468.4 563 48.5
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 1.4e-128 464.2 376 64.4
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 5.4e-125 452.2 547 47.2
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.3e-120 436.8 529 48.0
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 7.1e-117 425.2 389 60.9
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 5.6e-98 362.5 531 41.4
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.1e-97 360.5 306 55.6
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 2.0e-95 354.0 504 43.7
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 2.3e-83 313.9 296 60.5
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 3.1e-64 250.4 166 78.9
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 5.5e-61 239.6 242 53.7
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 4.4e-58 229.9 461 33.2
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 2.0e-55 221.1 234 55.1
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 1.3e-49 201.8 495 31.9
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 1.7e-49 201.4 400 33.8
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 4.2e-45 186.8 365 37.5
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.3e-43 181.0 91 89.0
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 9.1e-40 169.1 111 76.6
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 7.7e-39 166.0 138 62.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 5.0e-38 163.3 97 77.3
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 4.2e-37 160.2 410 31.0
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 3.6e-36 157.1 169 49.1
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 4.0e-35 153.7 118 64.4
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 9.2e-32 142.5 135 65.2
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 6.6e-30 136.3 125 68.0
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 4.7e-20 103.6 86 55.8
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 1.5e-18 98.6 168 39.3
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 4.7e-12 77.0 40 87.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 3.1e-11 74.3 48 70.8
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 7.5e-10 69.7 40 77.5
BcaC01g03529 Brassica carinata HOM05D004210 ORTHO05D005017 2.4e-08 64.7 98 39.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 3.5e-07 60.8 32 84.4
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 4.6e-07 60.5 33 81.8
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 2.3e-06 58.2 246 24.4
PGR031G3438 Punica granatum HOM05D002999 ORTHO05D003137 8.6e-06 56.2 195 25.1


User provided reference genes

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