Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 6.2e-64 247.3 124 100.0
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 2.5e-60 235.3 124 96.0
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 6.0e-59 230.7 124 94.4
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 9.4e-44 180.3 124 76.6
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 3.7e-40 168.3 123 72.4
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 3.7e-40 168.3 122 73.0
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 8.2e-40 167.2 122 71.3
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 5.4e-15 84.7 104 50.0
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 2.0e-14 82.8 124 41.9
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.0e-14 82.8 124 41.9
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.7e-14 82.4 104 49.0
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.7e-14 82.4 104 49.0
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.7e-14 82.4 104 49.0
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.5e-14 82.0 113 44.2
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 1.3e-13 80.1 110 46.4
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 1.9e-12 76.3 100 46.0
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 1.9e-12 76.3 106 47.2
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 2.5e-12 75.9 99 47.5
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.2e-12 75.5 90 47.8
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 9.4e-12 73.9 129 39.5
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 1.2e-11 73.6 83 49.4
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 1.6e-11 73.2 108 44.4
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 1.6e-11 73.2 136 41.2
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 2.1e-11 72.8 98 42.9
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 3.6e-11 72.0 99 45.5
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 3.6e-11 72.0 115 39.1
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 3.6e-11 72.0 97 44.3
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 3.6e-11 72.0 105 41.9
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 3.6e-11 72.0 119 44.5
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 3.6e-11 72.0 113 42.5
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 3.6e-11 72.0 113 42.5
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 3.6e-11 72.0 92 47.8
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 4.7e-11 71.6 96 44.8
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 8.0e-11 70.9 131 37.4
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 8.0e-11 70.9 85 48.2
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 1.0e-10 70.5 108 42.6
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.0e-10 70.5 97 42.3
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.0e-10 70.5 97 42.3
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 1.0e-10 70.5 97 42.3
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 1.4e-10 70.1 114 38.6
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 1.4e-10 70.1 139 35.3
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 1.8e-10 69.7 94 44.7
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 1.8e-10 69.7 90 45.6
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.8e-10 69.7 102 45.1
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 3.0e-10 68.9 87 49.4
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 3.0e-10 68.9 91 44.0
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 4.0e-10 68.6 108 40.7
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 4.0e-10 68.6 81 50.6
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 5.2e-10 68.2 90 45.6
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 5.2e-10 68.2 91 46.2
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 1.2e-09 67.0 143 35.0
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 1.2e-09 67.0 139 34.5
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 1.5e-09 66.6 79 44.3
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 1.5e-09 66.6 96 42.7
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 1.5e-09 66.6 92 45.7
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 2.0e-09 66.2 92 43.5
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 2.0e-09 66.2 92 43.5
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 2.6e-09 65.9 108 37.0
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 2.6e-09 65.9 87 48.3
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 3.4e-09 65.5 117 36.8
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 4.4e-09 65.1 91 44.0
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 1.7e-08 63.2 91 42.9
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 1.7e-08 63.2 91 39.6
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 2.2e-08 62.8 83 49.4
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 2.2e-08 62.8 83 49.4
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 2.2e-08 62.8 92 40.2
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 2.2e-08 62.8 92 40.2
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 2.2e-08 62.8 86 46.5
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 2.8e-08 62.4 117 35.0
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 2.8e-08 62.4 104 37.5
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.8e-08 62.4 82 46.3
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 2.8e-08 62.4 104 43.3
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 3.7e-08 62.0 83 49.4
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.7e-08 62.0 82 46.3
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 3.7e-08 62.0 83 41.0
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 3.7e-08 62.0 92 40.2
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 4.9e-08 61.6 92 40.2
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 4.9e-08 61.6 90 41.1
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 6.3e-08 61.2 84 47.6
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 6.3e-08 61.2 83 49.4
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 6.3e-08 61.2 83 49.4
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 6.3e-08 61.2 91 38.5
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 6.3e-08 61.2 92 40.2
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 6.3e-08 61.2 104 36.5
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 6.3e-08 61.2 90 40.0
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 8.3e-08 60.8 103 40.8
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 8.3e-08 60.8 103 40.8
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 8.3e-08 60.8 102 43.1
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 8.3e-08 60.8 104 40.4
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.1e-07 60.5 94 41.5
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 1.1e-07 60.5 105 41.0
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 1.1e-07 60.5 102 43.1
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.1e-07 60.5 114 35.1
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 1.1e-07 60.5 89 44.9
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.1e-07 60.5 92 40.2
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 1.8e-07 59.7 94 42.6
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 2.4e-07 59.3 102 40.2
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 2.4e-07 59.3 102 40.2
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 4.1e-07 58.5 141 36.2
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 5.4e-07 58.2 96 38.5
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 5.4e-07 58.2 96 38.5
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 5.4e-07 58.2 92 38.0
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 5.4e-07 58.2 92 38.0
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 5.4e-07 58.2 89 40.4
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 7.0e-07 57.8 96 38.5
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 7.0e-07 57.8 96 38.5
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 7.0e-07 57.8 96 38.5
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 7.0e-07 57.8 91 37.4
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.0e-07 57.8 101 36.6
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.2e-06 57.0 93 35.5
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.6e-06 56.6 105 39.0
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.6e-06 56.6 82 45.1
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-06 56.6 77 45.5
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 1.6e-06 56.6 102 39.2
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 1.6e-06 56.6 102 39.2
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 1.6e-06 56.6 94 34.0
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 2.7e-06 55.8 98 37.8
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 3.5e-06 55.5 94 40.4
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 4.5e-06 55.1 92 35.9
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 5.9e-06 54.7 83 42.2
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 7.7e-06 54.3 91 38.5


User provided reference genes

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