Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096400.4 Solanum lycopersicum HOM05D007414 ORTHO05D009482 9.6e-253 876.3 433 100.0
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 1.5e-242 842.4 429 98.1
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 4.6e-231 804.3 427 94.4
Nitab4.5_0004955g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 8.5e-209 730.3 428 84.8
CAN.G1045.37 Capsicum annuum HOM05D007414 ORTHO05D009482 1.4e-203 713.0 427 85.5
Nitab4.5_0000307g0260 Nicotiana tabacum HOM05D007414 ORTHO05D009482 8.5e-201 703.7 424 84.0
Peaxi162Scf00767g00524 Petunia axillaris HOM05D007414 ORTHO05D009482 4.4e-165 585.1 385 77.1
Actinidia02265 Actinidia chinensis HOM05D007414 ORTHO05D009482 1.5e-157 560.1 371 75.2
MSTRG.20514 Avicennia marina HOM05D007414 ORTHO05D009482 5.8e-157 558.1 374 73.5
CSS0022385 Camellia sinensis var. sinensis HOM05D007414 ORTHO05D009482 2.2e-156 556.2 371 74.4
Hma1.2p1_1202F.1_g266840 Hydrangea macrophylla HOM05D007414 ORTHO05D009482 1.9e-155 553.1 433 64.4
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 7.0e-155 551.2 371 73.0
GSVIVG01013487001 Vitis vinifera HOM05D007414 ORTHO05D009482 1.1e-150 537.3 429 66.7
QL04p017831 Quercus lobata HOM05D007414 ORTHO05D009482 2.0e-149 533.1 415 64.8
Nn7g36686 Nelumbo nucifera HOM05D007414 ORTHO05D009482 5.8e-149 531.6 379 68.9
DCAR_031835 Daucus carota HOM05D007414 ORTHO05D009482 2.2e-148 529.6 387 68.2
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 2.2e-148 529.6 407 66.3
COL.COLO4_20658 Corchorus olitorius HOM05D007414 ORTHO05D009482 3.7e-148 528.9 429 62.9
CiPaw.13G013700 Carya illinoinensis HOM05D007414 ORTHO05D009482 1.1e-147 527.3 438 61.4
Dinv22037 Davidia involucrata HOM05D007414 ORTHO05D009482 1.4e-147 526.9 369 71.5
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 9.2e-147 524.2 437 62.9
Lsat_1_v5_gn_4_29901 Lactuca sativa HOM05D007414 ORTHO05D009482 3.0e-145 519.2 400 65.8
Duzib114G0511 Durio zibethinus HOM05D007414 ORTHO05D009482 3.9e-145 518.8 385 67.5
CANSAT56G3550 Cannabis sativa HOM05D007414 ORTHO05D009482 1.9e-144 516.5 433 63.3
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 1.2e-143 513.8 379 67.8
Gorai.010G216100 Gossypium raimondii HOM05D007414 ORTHO05D009482 1.6e-143 513.5 432 62.5
HanXRQChr16g0525321 Helianthus annuus HOM05D007414 ORTHO05D009482 2.8e-143 512.7 423 64.5
Thecc.10G154500 Theobroma cacao HOM05D007414 ORTHO05D009482 3.6e-143 512.3 385 66.0
MD02G1287000 Malus domestica HOM05D007414 ORTHO05D009482 3.1e-142 509.2 376 69.7
ECA234G1800 Erigeron canadensis HOM05D007414 ORTHO05D009482 6.8e-142 508.1 372 68.8
Atru.chr12.1333 Acer truncatum HOM05D007414 ORTHO05D009482 4.4e-141 505.4 383 65.3
TWI15G0498 Tripterygium wilfordii HOM05D007414 ORTHO05D009482 9.9e-141 504.2 433 62.4
RcHm_v2.0_Chr1g0324301 Rosa chinensis HOM05D007414 ORTHO05D009482 2.2e-140 503.1 376 67.0
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 2.7e-138 496.1 428 60.0
Gohir.D10G192600 Gossypium hirsutum HOM05D007414 ORTHO05D009482 4.6e-138 495.4 384 65.1
Glyma.04G137000 Glycine max HOM05D007414 ORTHO05D009482 7.8e-138 494.6 438 59.8
CsaV3_5G024500 Cucumis sativus L. HOM05D007414 ORTHO05D009482 1.0e-137 494.2 404 62.1
Gorai.011G215300 Gossypium raimondii HOM05D007414 ORTHO05D009482 1.0e-137 494.2 429 60.1
Rhsim01G0124300 Rhododendron simsii HOM05D007414 ORTHO05D009482 1.0e-137 494.2 380 66.1
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 2.3e-137 493.0 376 64.6
FAN03G2686 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.0e-137 492.7 376 65.4
Eucgr.G03234 Eucalyptus grandis HOM05D007414 ORTHO05D009482 3.9e-137 492.3 381 64.6
FvH4_7g03070 Fragaria vesca HOM05D006097 ORTHO05D008538 3.9e-137 492.3 376 65.4
FAN06G2659 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.9e-137 492.3 376 65.4
Glyma.11G155300 Glycine max HOM05D007414 ORTHO05D009482 5.1e-137 491.9 375 65.3
Potri.001G027600 Populus trichocarpa HOM05D007414 ORTHO05D009482 8.7e-137 491.1 380 64.5
FAN10G2712 Fragaria x ananassa HOM05D007414 ORTHO05D009482 3.3e-136 489.2 376 64.9
VMungo1080G1369 Vigna mungo HOM05D007414 ORTHO05D009482 3.3e-136 489.2 375 65.6
Gohir.A10G185400 Gossypium hirsutum HOM05D007414 ORTHO05D009482 9.6e-136 487.6 429 59.4
Phvul.005G026400 Phaseolus vulgaris HOM05D007414 ORTHO05D009482 1.8e-134 483.4 430 59.8
Lalb_Chr25g0282101 Lupinus albus HOM05D007414 ORTHO05D009482 3.1e-134 482.6 376 64.9
Lj3g0021878 Lotus japonicus HOM05D007414 ORTHO05D009482 2.0e-133 479.9 379 63.3
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 2.9e-132 476.1 424 58.5
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 8.4e-132 474.6 376 64.4
MELO3C005149.2 Cucumis melo HOM05D007414 ORTHO05D009482 2.4e-131 473.0 430 57.7
Sabra01G0020000 Salix brachista HOM05D007414 ORTHO05D009482 5.4e-131 471.9 412 59.0
ClCG01G007530 Citrullus lanatus HOM05D007414 ORTHO05D009482 7.1e-131 471.5 377 63.1
arahy.Tifrunner.gnm1.ann1.GMDI7B Arachis hypogaea HOM05D007414 ORTHO05D009482 1.0e-129 467.6 432 58.1
Gohir.A06G174800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 3.0e-129 466.1 371 65.2
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 3.9e-129 465.7 376 62.8
Gohir.D06G184800 Gossypium hirsutum HOM05D007414 ORTHO05D009482 3.3e-128 462.6 372 64.0
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 4.3e-128 462.2 431 58.5
PSO384G0147 Papaver somniferum HOM05D007414 ORTHO05D009482 2.1e-127 459.9 385 61.3
PSO339G0457 Papaver somniferum HOM05D007414 ORTHO05D009482 4.8e-127 458.8 440 56.1
EL10Ac2g02800 Beta vulgaris HOM05D007414 ORTHO05D009482 1.7e-124 450.3 459 54.5
Sed0006433 Sechium edule HOM05D007414 ORTHO05D009482 1.6e-122 443.7 349 63.3
THA.LOC104826727 Tarenaya hassleriana HOM05D007414 ORTHO05D009482 2.7e-122 443.0 378 60.3
Manes.15G192920 Manihot esculenta HOM05D007414 ORTHO05D009482 6.0e-122 441.8 369 62.3
Aqoxy1G00360 Aquilegia oxysepala HOM05D007414 ORTHO05D009482 2.3e-121 439.9 430 56.0
Nn7g36678 Nelumbo nucifera HOM05D007414 ORTHO05D009482 3.0e-121 439.5 389 60.9
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 6.7e-121 438.3 348 63.5
Potri.003G196200 Populus trichocarpa HOM05D007414 ORTHO05D009482 4.9e-116 422.2 372 58.1
Haze_03038 Corylus avellana HOM05D007414 ORTHO05D009482 1.3e-113 414.1 370 59.5
ATR0745G014 Amborella trichopoda HOM05D007414 ORTHO05D009482 2.0e-109 400.2 380 57.4
Hund13359 Selenicereus undatus HOM05D007414 ORTHO05D009482 2.1e-106 390.2 383 54.0
Dinv32026 Davidia involucrata HOM05D007414 ORTHO05D009482 5.1e-105 385.6 252 73.8
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 9.4e-99 364.8 305 60.0
Psat5g222240 Pisum sativum HOM05D007414 ORTHO05D009482 4.1e-94 349.4 289 59.5
Prupe.2G036300 Prunus persica HOM05D007414 ORTHO05D009482 1.2e-93 347.8 293 62.8
SEGI_40936 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 4.5e-93 345.9 391 47.3
Migut.O00949 Erythranthe guttata HOM05D007414 ORTHO05D009482 2.7e-90 336.7 254 68.9
MBI19_g25612_MAGBIO Magnolia biondii HOM05D007414 ORTHO05D009482 3.1e-78 296.6 219 67.6
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 5.7e-64 249.2 398 38.9
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 7.7e-61 238.8 414 36.0
Pp3c11_910 Physcomitrium patens HOM05D007414 ORTHO05D009482 9.5e-59 231.9 373 39.9
Zm00001eb128490 Zea mays HOM05D007414 ORTHO05D009482 3.0e-57 226.9 207 58.0
Nitab4.5_0008639g0030 Nicotiana tabacum HOM05D007414 ORTHO05D009482 3.4e-56 223.4 139 79.1
DCAR_000332 Daucus carota HOM05D007414 ORTHO05D009482 6.3e-55 219.2 169 67.5
Os01g0272800 Oryza sativa ssp. japonica HOM05D007414 ORTHO05D009482 4.7e-50 203.0 212 51.9
Migut.B01233 Erythranthe guttata HOM05D007414 ORTHO05D009482 2.0e-48 197.6 120 78.3
TPR.G1409 Trifolium pratense HOM05D007414 ORTHO05D009482 6.2e-42 176.0 117 71.8
Lsat_1_v5_gn_0_2021 Lactuca sativa HOM05D007414 ORTHO05D009482 8.4e-15 85.9 75 52.0
Lsat_1_v5_gn_3_3821 Lactuca sativa HOM05D007414 ORTHO05D009482 6.6e-12 76.3 49 67.3
PRCOL_00005884 Prasinoderma coloniale HOM05D007414 ORTHO05D009482 8.7e-12 75.9 255 28.6
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 5.3e-09 66.6 386 25.1
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 9.0e-09 65.9 384 25.5
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 1.2e-08 65.5 268 27.2
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 2.0e-08 64.7 385 24.9
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 2.6e-08 64.3 447 23.0
SEGI_36011 Sequoiadendron giganteum HOM05D007414 ORTHO05D009482 5.8e-08 63.2 69 43.5
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 7.6e-08 62.8 397 23.4
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 7.6e-08 62.8 382 23.8
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 2.2e-07 61.2 388 24.5
MD02G1286500 Malus domestica HOM05D007414 ORTHO05D009482 2.2e-07 61.2 75 49.3
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 3.8e-07 60.5 273 26.7
Oeu014631.1 Olea europaea HOM05D007414 ORTHO05D009482 3.8e-07 60.5 39 71.8
PRCOL_00006348 Prasinoderma coloniale HOM05D007414 ORTHO05D333730 3.8e-07 60.5 106 39.6
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 3.8e-07 60.5 380 23.9
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 6.4e-07 59.7 287 25.4
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 6.4e-07 59.7 400 24.8
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 8.4e-07 59.3 360 22.8
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 8.4e-07 59.3 389 24.4
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.1e-06 58.9 362 23.8
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 1.4e-06 58.5 391 24.0
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.4e-06 58.5 391 24.0
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 1.9e-06 58.2 339 25.4
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 2.4e-06 57.8 394 23.4
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 2.4e-06 57.8 280 25.7
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 2.4e-06 57.8 384 23.2
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.4e-06 57.8 355 24.8
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 3.2e-06 57.4 322 26.1
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 5.5e-06 56.6 267 25.5
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 7.1e-06 56.2 276 26.4
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 9.3e-06 55.8 364 23.1
TPR.G34603 Trifolium pratense HOM05D007414 ORTHO05D009482 9.3e-06 55.8 40 60.0


User provided reference genes

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