Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 9.2e-148 526.9 280 100.0
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 3.1e-127 458.8 252 94.8
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 7.6e-102 374.4 256 80.9
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 6.2e-35 152.1 285 42.5
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.4e-33 146.4 255 43.9
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 3.7e-32 142.9 269 39.8
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 2.4e-31 140.2 267 40.4
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 4.6e-30 136.0 265 39.6
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 1.1e-28 131.3 257 39.3
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 6.2e-27 125.6 268 36.9
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 1.4e-26 124.4 304 36.5
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 4.4e-25 119.4 263 38.0
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 2.9e-24 116.7 281 35.6
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 3.7e-24 116.3 276 36.6
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 1.9e-23 114.0 298 33.9
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 4.1e-23 112.8 267 36.3
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 4.1e-23 112.8 267 36.3
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 9.2e-23 111.7 299 32.1
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 1.6e-22 110.9 298 32.9
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 1.6e-22 110.9 283 33.6
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.6e-22 110.9 301 34.2
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.7e-22 110.2 301 33.2
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 6.0e-22 109.0 281 35.6
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 1.0e-21 108.2 286 34.6
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 3.0e-21 106.7 277 35.4
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 5.1e-21 105.9 283 35.0
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 6.6e-21 105.5 242 38.4
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 6.6e-21 105.5 267 34.8
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.5e-20 104.4 282 34.4
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 1.9e-20 104.0 282 34.8
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 1.9e-20 104.0 270 31.5
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 5.6e-20 102.4 307 32.2
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 5.6e-20 102.4 242 36.0
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 9.6e-20 101.7 294 32.3
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 9.6e-20 101.7 270 33.0
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 1.2e-19 101.3 280 35.0
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 3.6e-19 99.8 277 32.9
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 4.7e-19 99.4 303 32.7
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 6.2e-19 99.0 279 30.5
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 6.2e-19 99.0 272 33.8
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 6.2e-19 99.0 258 35.3
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 8.1e-19 98.6 254 32.3
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.1e-18 98.2 284 32.0
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.1e-18 96.7 244 34.0
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 5.2e-18 95.9 278 32.0
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 5.2e-18 95.9 303 31.0
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 6.8e-18 95.5 253 32.4
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 8.9e-18 95.1 244 32.4
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 8.9e-18 95.1 244 33.6
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.2e-17 94.7 291 32.3
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 1.5e-17 94.4 251 35.1
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.6e-17 93.6 245 33.5
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 4.4e-17 92.8 269 32.3
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 7.6e-17 92.0 212 36.8
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 1.3e-16 91.3 299 30.8
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.3e-16 91.3 305 30.5
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.3e-16 91.3 305 30.5
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 1.7e-16 90.9 297 33.3
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.2e-16 90.5 304 29.9
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.2e-16 90.5 185 41.6
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 2.9e-16 90.1 323 30.3
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 3.8e-16 89.7 306 31.4
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 4.9e-16 89.4 245 33.5
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 4.9e-16 89.4 295 28.8
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 4.9e-16 89.4 294 33.3
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 6.4e-16 89.0 213 37.6
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 6.4e-16 89.0 296 29.7
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 1.1e-15 88.2 268 30.6
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 1.9e-15 87.4 284 31.3
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 1.9e-15 87.4 270 31.9
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 2.4e-15 87.0 282 30.1
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 2.4e-15 87.0 235 34.5
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 3.2e-15 86.7 207 35.3
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.2e-15 86.3 230 33.5
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 5.4e-15 85.9 263 28.9
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 1.2e-14 84.7 283 31.8
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 3.5e-14 83.2 245 30.2
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 4.6e-14 82.8 238 32.4
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.0e-13 81.6 276 30.4
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 1.3e-13 81.3 264 29.2
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 1.1e-12 78.2 243 30.5
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 3.3e-12 76.6 231 32.0
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 3.3e-12 76.6 235 28.5
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 1.3e-11 74.7 270 30.0
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 1.6e-11 74.3 297 26.3
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 1.6e-11 74.3 252 28.2
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 2.8e-11 73.6 247 28.7
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 3.6e-11 73.2 269 27.9
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 6.2e-11 72.4 208 29.8
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 6.2e-11 72.4 262 28.6
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 6.2e-11 72.4 208 29.8
Nitab4.5_0000307g0150 Nicotiana tabacum HOM05D007199 ORTHO05D007257 6.2e-11 72.4 75 54.7
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 8.1e-11 72.0 281 27.8
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 1.1e-10 71.6 251 25.9
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 1.1e-10 71.6 282 25.9
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 1.1e-10 71.6 264 26.9
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 1.1e-10 71.6 234 27.4
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 1.4e-10 71.2 271 28.8
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 2.4e-10 70.5 332 27.4
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 3.1e-10 70.1 266 29.3
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 4.0e-10 69.7 263 27.4
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 5.3e-10 69.3 115 40.9
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 6.9e-10 68.9 258 28.7
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 6.9e-10 68.9 281 27.4
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 6.9e-10 68.9 265 31.7
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 9.0e-10 68.6 214 31.3
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 2.0e-09 67.4 209 30.1
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 3.4e-09 66.6 252 30.6
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 4.4e-09 66.2 222 27.5
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 7.6e-09 65.5 199 27.1
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 9.9e-09 65.1 261 26.4
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 1.3e-08 64.7 272 25.0
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 1.7e-08 64.3 154 36.4
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 2.2e-08 63.9 191 31.9
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 1.9e-07 60.8 196 28.6
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 1.9e-07 60.8 242 26.0
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 2.4e-07 60.5 260 27.3
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 3.2e-07 60.1 268 26.5
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 4.2e-07 59.7 70 42.9
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 7.1e-07 58.9 156 34.6
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 2.7e-06 57.0 239 27.6


User provided reference genes

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