Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 2117.4 1066 100.0
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 2055.8 1068 97.2
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1946.4 1068 92.2
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1828.9 1069 87.1
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1810.4 1068 86.0
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1586.6 1084 75.3
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1581.2 1082 74.0
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1579.3 1088 73.9
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1573.1 1074 74.1
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1562.4 1091 73.6
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1561.6 1065 74.2
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1557.7 1106 72.2
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 1555.0 1088 71.7
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1549.3 1079 72.9
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1548.5 1072 73.1
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1548.1 1087 71.7
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1543.1 1061 73.0
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1542.3 1078 72.7
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 1541.2 1091 71.3
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1540.0 1064 73.3
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1535.8 1087 72.1
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1535.0 1068 72.3
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1532.3 1073 72.4
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1527.3 1077 71.0
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1523.1 1082 72.7
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1521.9 1068 73.7
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1520.8 1062 72.8
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1520.8 1075 71.6
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1516.9 1056 73.0
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1515.0 1080 71.7
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1515.0 1070 71.0
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1512.7 1084 70.1
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1511.9 1060 71.5
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1509.6 1049 71.8
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1508.0 1084 71.2
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1508.0 1077 70.0
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1508.0 1081 70.8
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1507.3 1058 71.3
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1505.7 1066 69.7
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1505.3 1079 70.7
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1504.2 1061 72.1
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1504.2 1067 71.6
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1502.3 1076 71.0
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1500.0 1096 69.6
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1500.0 1060 71.0
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1499.2 1062 70.9
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1498.4 1063 70.6
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1498.0 1060 71.6
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1496.9 1059 71.6
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1494.6 1075 69.9
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1494.2 1059 71.4
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1491.1 1069 70.3
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1489.9 1066 70.8
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1488.8 1070 69.9
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1488.0 1070 70.1
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1485.7 1067 70.4
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1485.3 1060 71.6
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1482.6 957 80.4
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1481.1 1061 71.0
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1480.7 1062 70.5
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1479.2 1064 70.2
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1478.4 1064 70.1
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1477.6 1083 70.4
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1477.6 1076 69.5
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1475.7 1064 70.1
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1474.1 1065 69.5
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1473.4 1072 69.7
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1472.6 1063 70.3
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1472.2 1069 70.9
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1471.8 1064 69.9
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1471.8 1075 70.0
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1466.8 1072 69.6
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1465.7 1074 68.4
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1458.7 1103 68.0
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1450.6 1072 69.0
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1448.3 1076 69.1
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1446.8 1067 69.7
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1443.3 1062 69.5
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1439.1 1090 68.1
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1430.6 1077 68.1
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1416.0 1074 68.2
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1415.2 1125 66.0
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1410.6 1210 62.0
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1374.8 982 71.9
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1363.2 1070 66.5
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1345.1 940 72.0
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1338.9 1072 64.6
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1332.4 1082 63.6
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1307.4 1074 61.7
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1271.1 1072 60.4
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1266.1 936 69.1
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1257.3 1196 56.9
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1237.6 1062 60.6
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 0.0e+00 1184.5 606 98.5
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1126.7 1074 59.5
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1121.7 759 73.5
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1084.7 758 71.5
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 7.0e-305 1050.8 755 70.6
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 2.6e-283 979.2 719 70.4
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 2.4e-281 972.6 1067 48.3
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 6.6e-263 911.4 1057 47.7
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.6e-261 905.6 1013 54.2
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 3.4e-227 792.7 723 57.8
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 4.6e-224 782.3 401 98.5
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 1.8e-223 780.4 1006 43.9
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.0e-218 764.6 536 71.8
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 4.1e-196 689.5 496 69.2
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 1.2e-187 661.4 653 55.3
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 4.4e-182 642.9 1508 31.6
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 2.1e-131 474.6 324 72.8
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.0e-82 312.8 192 77.6
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 7.8e-54 216.9 137 76.6
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 3.2e-39 168.3 109 78.9
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 2.1e-22 112.5 59 83.1
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 1.4e-18 99.8 54 81.5
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 7.8e-14 84.0 65 58.5
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.4e-10 72.4 45 73.3
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.4e-10 72.4 45 73.3
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 2.0e-09 69.3 211 27.0
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 4.5e-09 68.2 40 77.5
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 8.4e-08 63.9 71 49.3
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 2.4e-07 62.4 71 47.9


User provided reference genes

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