Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g095870.3 Solanum lycopersicum HOM05D000590 ORTHO05D006825 2.3e-181 638.6 303 100.0
Sopen01g039610 Solanum pennellii HOM05D000590 ORTHO05D006825 2.3e-181 638.6 303 100.0
Peaxi162Scf00786g00323 Petunia axillaris HOM05D000590 ORTHO05D006825 1.6e-161 572.8 301 87.7
CAN.G986.8 Capsicum annuum HOM05D000590 ORTHO05D006825 1.8e-149 532.7 272 90.4
Nitab4.5_0004999g0020 Nicotiana tabacum HOM05D000590 ORTHO05D006825 5.5e-146 521.2 272 89.3
Nitab4.5_0000838g0230 Nicotiana tabacum HOM05D000590 ORTHO05D006825 7.4e-143 510.8 268 89.2
Oeu015362.1 Olea europaea HOM05D000590 ORTHO05D006825 1.4e-138 496.5 298 76.5
SalBow3G4091 Salvia bowleyana HOM05D000590 ORTHO05D006825 7.4e-135 484.2 301 72.4
Migut.B01870 Erythranthe guttata HOM05D000590 ORTHO05D006825 2.2e-134 482.6 301 71.8
Haze_15659 Corylus avellana HOM05D000590 ORTHO05D006825 2.9e-131 472.2 299 72.9
Cfa003800 Carpinus fangiana HOM05D000590 ORTHO05D001713 6.5e-131 471.1 301 72.1
Phvul.010G113800 Phaseolus vulgaris HOM05D000590 ORTHO05D006825 1.9e-130 469.5 299 71.2
Glyma.16G025000 Glycine max HOM05D000590 ORTHO05D006825 1.6e-129 466.5 299 71.2
Dinv35112 Davidia involucrata HOM05D000590 ORTHO05D006825 1.0e-128 463.8 301 69.8
Psat4g160760 Pisum sativum HOM05D000590 ORTHO05D006825 1.0e-128 463.8 299 70.6
Cc02_g39290 Coffea canephora HOM05D000590 ORTHO05D006825 1.8e-128 463.0 301 68.8
Migut.N01547 Erythranthe guttata HOM05D000590 ORTHO05D006825 6.7e-128 461.1 301 68.4
PGSC0003DMG400000222 Solanum tuberosum HOM05D000590 ORTHO05D006825 1.5e-127 459.9 241 93.4
Lj3g0003332 Lotus japonicus HOM05D000590 ORTHO05D006825 7.4e-127 457.6 299 69.9
TWI59G0780 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 4.5e-124 448.4 301 68.8
PGR031G1800 Punica granatum HOM05D000590 ORTHO05D006825 7.7e-124 447.6 304 66.1
GSVIVG01027095001 Vitis vinifera HOM05D000590 ORTHO05D006825 5.0e-123 444.9 301 68.4
Prupe.2G187500 Prunus persica HOM05D000590 ORTHO05D006825 8.5e-123 444.1 301 69.4
GSVIVG01027098001 Vitis vinifera HOM05D000590 ORTHO05D006825 4.2e-122 441.8 301 67.8
CANSAT56G2355 Cannabis sativa HOM05D000590 ORTHO05D006825 7.2e-122 441.0 303 67.0
Lj7A501T47 Lonicera japonica HOM05D000590 ORTHO05D006825 9.4e-122 440.7 299 68.6
TWI14G0815 Tripterygium wilfordii HOM05D000590 ORTHO05D006825 1.6e-121 439.9 301 67.8
RcHm_v2.0_Chr1g0359371 Rosa chinensis HOM05D000590 ORTHO05D006825 2.3e-120 436.0 300 68.0
CsaV3_6G007130 Cucumis sativus L. HOM05D000590 ORTHO05D006825 3.3e-119 432.2 310 65.8
Medtr8g027735 Medicago truncatula HOM05D000590 ORTHO05D006825 3.3e-119 432.2 274 70.4
HanXRQChr04g0120221 Helianthus annuus HOM05D000590 ORTHO05D006825 4.4e-119 431.8 301 64.8
AUR62004487 Chenopodium quinoa HOM05D000590 ORTHO05D006825 7.4e-119 431.0 303 63.4
MELO3C022415.2 Cucumis melo HOM05D000590 ORTHO05D006825 9.7e-119 430.6 310 65.8
FAN06G0495 Fragaria x ananassa HOM05D000590 ORTHO05D006825 9.7e-119 430.6 300 66.3
FAN06G0513 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.8e-118 429.1 300 66.3
AUR62023466 Chenopodium quinoa HOM05D000590 ORTHO05D006825 3.7e-118 428.7 303 63.0
Ca_23539_v3 Cicer arietinum L. HOM05D000590 ORTHO05D006825 8.2e-118 427.6 274 71.2
FAN10G3131 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.4e-117 426.8 300 66.0
MD01G1080100 Malus domestica HOM05D000590 ORTHO05D006825 1.4e-117 426.8 302 65.9
FAN01G2486 Fragaria x ananassa HOM05D000590 ORTHO05D006825 1.8e-117 426.4 300 66.0
Lsat_1_v5_gn_7_1240 Lactuca sativa HOM05D000590 ORTHO05D006825 1.8e-117 426.4 274 70.1
FAN10G1076 Fragaria x ananassa HOM05D000590 ORTHO05D006825 2.4e-117 426.0 300 66.0
QL04p061137 Quercus lobata HOM05D000590 ORTHO05D006825 4.1e-117 425.2 302 66.2
FvH4_7g16360 Fragaria vesca HOM05D000590 ORTHO05D006825 7.0e-117 424.5 300 66.0
Rhsim01G0172200 Rhododendron simsii HOM05D000590 ORTHO05D006825 7.0e-117 424.5 271 71.2
Nn2g14772 Nelumbo nucifera HOM05D000590 ORTHO05D006825 1.2e-116 423.7 302 63.6
SGA_v2.0_scaffold5G03015 Striga asiatica HOM05D000590 ORTHO05D006825 1.2e-116 423.7 318 63.5
Gohir.A08G034400 Gossypium hirsutum HOM05D000590 ORTHO05D006825 1.6e-116 423.3 301 62.8
TPR.G15352 Trifolium pratense HOM05D000590 ORTHO05D006825 4.5e-116 421.8 272 69.1
Gorai.004G043900 Gossypium raimondii HOM05D000590 ORTHO05D006825 2.2e-115 419.5 301 62.5
Actinidia28121 Actinidia chinensis HOM05D000590 ORTHO05D006825 2.9e-115 419.1 271 70.5
FAN03G1068 Fragaria x ananassa HOM05D000590 ORTHO05D006825 6.5e-115 417.9 291 66.3
Gohir.D08G044900 Gossypium hirsutum HOM05D000590 ORTHO05D006825 8.5e-115 417.5 301 62.1
THA.LOC104817360 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 1.5e-114 416.8 301 63.1
Duzib133G1228 Durio zibethinus HOM05D000590 ORTHO05D006825 5.5e-114 414.8 301 62.8
AL5G44280 Arabidopsis lyrata HOM05D000590 ORTHO05D006825 2.1e-113 412.9 293 64.2
Thhalv10006430m.g Eutrema salsugineum HOM05D000590 ORTHO05D006825 2.1e-113 412.9 293 63.5
CiPaw.02G040500 Carya illinoinensis HOM05D000590 ORTHO05D006825 6.1e-113 411.4 299 64.5
Eucgr.D02371 Eucalyptus grandis HOM05D000590 ORTHO05D006825 6.1e-113 411.4 301 62.8
BcaB02g08143 Brassica carinata HOM05D000590 ORTHO05D006825 8.0e-113 411.0 293 63.5
CARHR172060 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.0e-112 410.6 299 62.9
AT3G61730 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.3e-112 409.5 300 63.3
Potri.014G098300 Populus trichocarpa HOM05D000590 ORTHO05D006825 5.2e-112 408.3 302 61.3
THA.LOC104802069 Tarenaya hassleriana HOM05D000590 ORTHO05D006825 5.2e-112 408.3 301 62.1
DCAR_006973 Daucus carota HOM05D000590 ORTHO05D006825 3.3e-111 405.6 306 62.7
Manes.01G246600 Manihot esculenta HOM05D000590 ORTHO05D006825 7.5e-111 404.4 302 59.6
Ah.05g179600 Amaranthus hybridus HOM05D000590 ORTHO05D006825 9.1e-109 397.5 282 63.8
AT5G36000 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 2.0e-108 396.4 293 61.1
Aa31LG10G15730 Aethionema arabicum HOM05D000590 ORTHO05D001713 2.7e-108 396.0 298 60.4
EL10Ac1g00275 Beta vulgaris HOM05D000590 ORTHO05D006825 1.0e-107 394.0 268 66.0
Ciclev10023676m.g Citrus clementina HOM05D000590 ORTHO05D006825 2.9e-107 392.5 271 64.2
Atru.chr5.661 Acer truncatum HOM05D000590 ORTHO05D006825 3.2e-106 389.0 303 59.1
Oeu004946.1 Olea europaea HOM05D000590 ORTHO05D006825 3.2e-106 389.0 268 68.7
Duzib138G1692 Durio zibethinus HOM05D000590 ORTHO05D006825 4.2e-106 388.7 276 64.9
vmacro12678 Vaccinium macrocarpon HOM05D000590 ORTHO05D001713 1.6e-105 386.7 291 62.9
BolC6t37952H Brassica oleracea HOM05D000590 ORTHO05D006825 2.1e-105 386.3 295 60.0
BraA04t15812Z Brassica rapa HOM05D000590 ORTHO05D006825 2.1e-105 386.3 290 62.8
ATR0602G065 Amborella trichopoda HOM05D000590 ORTHO05D006825 4.0e-104 382.1 302 57.6
Aqoxy5G04231 Aquilegia oxysepala HOM05D000590 ORTHO05D006825 7.5e-103 377.9 261 67.4
Sed0003230 Sechium edule HOM05D000590 ORTHO05D006825 1.8e-101 373.2 306 59.8
ECA236G1053 Erigeron canadensis HOM05D000590 ORTHO05D001713 1.2e-100 370.5 245 68.2
PSO478G0645 Papaver somniferum HOM05D000590 ORTHO05D006825 7.2e-98 361.3 278 59.0
PSO782G3674 Papaver somniferum HOM05D000590 ORTHO05D006825 9.5e-98 360.9 278 59.4
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 6.8e-96 354.8 269 60.2
Sabra14G0072100 Salix brachista HOM05D000590 ORTHO05D001713 4.4e-95 352.1 284 57.7
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.8e-93 346.7 291 56.0
A04p00950 Brassica napus HOM05D000590 ORTHO05D006825 2.0e-92 343.2 294 56.8
Sp5g01640 Schrenkiella parvula HOM05D000590 ORTHO05D006825 2.9e-91 339.3 300 55.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.4e-87 325.9 269 57.2
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.7e-86 323.6 269 56.9
Carub.0005s2847 Capsella rubella HOM05D000590 ORTHO05D006825 2.9e-86 322.8 231 62.8
ClCG06G001200 Citrullus lanatus HOM05D000590 ORTHO05D006825 2.7e-84 316.2 317 52.1
Cpa.g.sc96.9 Carica papaya HOM05D000590 ORTHO05D006825 3.5e-84 315.8 301 51.5
Thecc.01G343200 Theobroma cacao HOM05D000590 ORTHO05D006825 5.0e-83 312.0 213 65.7
BcaB02g08144 Brassica carinata HOM05D000590 ORTHO05D006825 1.4e-80 303.9 278 53.2
MSTRG.17339 Avicennia marina HOM05D000590 ORTHO05D006825 4.0e-80 302.4 188 73.9
COL.COLO4_06291 Corchorus olitorius HOM05D000590 ORTHO05D000717 6.8e-80 301.6 278 54.0
VMungo0331G1406 Vigna mungo HOM05D000590 ORTHO05D000717 4.1e-77 292.4 188 72.3
MBI06_g08454_MAGBIO Magnolia biondii HOM05D000590 ORTHO05D006825 1.7e-75 287.0 271 51.3
Lalb_Chr10g0100491 Lupinus albus HOM05D000590 ORTHO05D006825 5.0e-75 285.4 188 69.7
C04p31120 Brassica napus HOM05D000590 ORTHO05D006825 1.2e-73 280.8 252 55.6
SEGI_08329 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 3.2e-69 266.2 272 46.0
HPP92_002828 Vanilla planifolia HOM05D000590 ORTHO05D006825 5.4e-69 265.4 334 43.1
Os01g0219200 Oryza sativa ssp. japonica HOM05D000590 ORTHO05D006825 7.8e-68 261.5 304 45.4
Pp3c6_8570 Physcomitrium patens HOM05D000590 ORTHO05D006825 1.8e-64 250.4 295 42.0
TAR375G0589 Trochodendron aralioides HOM05D000590 ORTHO05D006825 3.1e-64 249.6 176 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2724 Anthoceros agrestis HOM05D000590 ORTHO05D006825 3.2e-61 239.6 246 46.7
Sc26g0000660 Simmondsia chinensis HOM05D000590 ORTHO05D006825 1.6e-60 237.3 185 60.5
BcaC02g10247 Brassica carinata HOM05D000590 ORTHO05D006825 1.9e-58 230.3 188 60.6
Glyma.07G056100 Glycine max HOM05D000590 ORTHO05D006825 5.2e-56 222.2 190 56.8
GSVIVG01027114001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.0e-55 220.3 188 56.9
SMO164G0232 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 7.6e-55 218.4 279 40.9
arahy.Tifrunner.gnm1.ann1.0G81PD Arachis hypogaea HOM05D000590 ORTHO05D006825 3.5e-52 209.5 205 53.2
CBR_g71803 Chara braunii HOM05D000590 ORTHO05D006825 1.0e-51 208.0 319 34.8
SMO200G0118 Selaginella moellendorffii HOM05D000590 ORTHO05D006825 1.0e-51 208.0 281 39.9
CDE02G2715 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 3.0e-51 206.5 190 53.2
CBR_g49078 Chara braunii HOM05D000590 ORTHO05D006825 6.6e-51 205.3 311 34.4
arahy.Tifrunner.gnm1.ann1.AM6JUY Arachis hypogaea HOM05D000590 ORTHO05D006825 3.1e-48 196.4 129 72.1
CSS0016052 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 2.0e-47 193.7 119 75.6
Mapoly0251s0003 Marchantia polymorpha HOM05D000590 ORTHO05D006825 9.9e-47 191.4 272 37.9
CSS0003243 Camellia sinensis var. sinensis HOM05D000590 ORTHO05D006825 1.3e-46 191.0 135 65.9
HanXRQChr09g0243571 Helianthus annuus HOM05D000590 ORTHO05D006825 8.7e-43 178.3 127 63.0
SMO338G0043 Selaginella moellendorffii HOM05D004142 ORTHO05D005411 8.7e-43 178.3 271 37.3
Rhsim02G0230200 Rhododendron simsii HOM05D000590 ORTHO05D006825 3.1e-40 169.9 220 42.3
AT3G62500 Arabidopsis thaliana HOM05D000590 ORTHO05D006825 5.3e-40 169.1 178 52.8
Zm00001eb338700 Zea mays HOM05D000590 ORTHO05D006825 5.3e-40 169.1 256 36.3
CDE02G3030 Ceratophyllum demersum HOM05D000590 ORTHO05D006825 2.2e-38 163.7 117 62.4
Sc26g0000670 Simmondsia chinensis HOM05D000590 ORTHO05D006825 6.4e-38 162.2 117 64.1
VMungo0331G1881 Vigna mungo HOM05D000590 ORTHO05D006825 7.9e-36 155.2 111 62.2
Lalb_Chr10g0100501 Lupinus albus HOM05D000590 ORTHO05D006825 1.1e-34 151.4 106 65.1
PSO063G6641 Papaver somniferum HOM05D000590 ORTHO05D006825 3.3e-34 149.8 121 54.5
SEGI_01413 Sequoiadendron giganteum HOM05D000590 ORTHO05D006825 5.6e-34 149.1 117 54.7
TPR.G3009 Trifolium pratense HOM05D000590 ORTHO05D006825 1.4e-32 144.4 137 51.8
GSVIVG01027101001 Vitis vinifera HOM05D000590 ORTHO05D006825 3.5e-28 129.8 96 61.5
BolC4t24651H Brassica oleracea HOM05D000590 ORTHO05D006825 1.8e-27 127.5 127 48.0
Sabra02G0141900 Salix brachista HOM05D000590 ORTHO05D006825 1.9e-21 107.5 182 38.5
arahy.Tifrunner.gnm1.ann1.06LZL4 Arachis hypogaea HOM05D000590 ORTHO05D006825 1.6e-20 104.4 63 71.4
CARHR055570 Cardamine hirsuta HOM05D000590 ORTHO05D006825 1.6e-20 104.4 76 59.2
SHI13292 Sapria himalayana HOM05D000590 ORTHO05D006825 1.1e-18 98.2 73 63.0
unitig_747.g21341 Utricularia gibba HOM05D000590 ORTHO05D006825 2.4e-16 90.5 60 70.0
BcaC02g10248 Brassica carinata HOM05D000590 ORTHO05D006825 4.5e-15 86.3 51 64.7
GSVIVG01027108001 Vitis vinifera HOM05D000590 ORTHO05D006825 2.2e-14 84.0 61 62.3
SHI13291 Sapria himalayana HOM05D000590 ORTHO05D006825 1.9e-13 80.9 66 56.1
Zm00001eb197190 Zea mays HOM05D002169 ORTHO05D023180 2.5e-13 80.5 166 30.1
Zm00001eb119810 Zea mays HOM05D000590 ORTHO05D006825 3.2e-13 80.1 95 41.1
PSO210G5020 Papaver somniferum HOM05D001459 ORTHO05D003498 1.2e-07 61.6 51 52.9


User provided reference genes

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