Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g095230.4 Solanum lycopersicum HOM05D005133 ORTHO05D006685 7.2e-240 833.6 439 100.0
Sopen01g039020 Solanum pennellii HOM05D005133 ORTHO05D006685 1.4e-214 749.6 412 96.4
PGSC0003DMG401000198 Solanum tuberosum HOM05D005133 ORTHO05D006685 3.2e-211 738.4 412 94.9
Nitab4.5_0003501g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.6e-189 665.6 408 86.0
Peaxi162Scf00020g01713 Petunia axillaris HOM05D005133 ORTHO05D006685 7.8e-186 654.1 412 85.2
CAN.G78.137 Capsicum annuum HOM05D005133 ORTHO05D006685 1.1e-174 617.1 408 81.9
Nitab4.5_0000915g0010 Nicotiana tabacum HOM05D005133 ORTHO05D006685 2.4e-174 615.9 385 85.2
Dinv43872 Davidia involucrata HOM05D005133 ORTHO05D006685 2.8e-135 486.1 414 67.1
Cc06_g17440 Coffea canephora HOM05D005133 ORTHO05D006685 7.7e-133 478.0 411 67.2
Gohir.D07G145800 Gossypium hirsutum HOM05D005133 ORTHO05D006685 2.9e-132 476.1 414 65.5
Gorai.001G158000 Gossypium raimondii HOM05D005133 ORTHO05D006685 2.9e-132 476.1 414 65.5
Thecc.01G351000 Theobroma cacao HOM05D005133 ORTHO05D006685 8.0e-130 468.0 414 64.7
CSS0009332 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.8e-129 466.8 427 64.2
Atru.chr5.593 Acer truncatum HOM05D005133 ORTHO05D006685 3.9e-129 465.7 408 65.0
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 3.9e-129 465.7 432 62.0
Actinidia20170 Actinidia chinensis HOM05D005133 ORTHO05D006685 6.7e-129 464.9 411 65.2
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.1e-128 464.2 442 61.1
SalBow3G2243 Salvia bowleyana HOM05D005133 ORTHO05D006685 5.7e-128 461.8 439 62.2
Dinv32531 Davidia involucrata HOM05D005133 ORTHO05D006685 9.7e-128 461.1 411 65.2
Duzib133G0222 Durio zibethinus HOM05D005133 ORTHO05D006685 9.7e-128 461.1 413 64.2
MSTRG.20869 Avicennia marina HOM05D005133 ORTHO05D006685 3.7e-127 459.1 410 65.1
Cpa.g.sc11.53 Carica papaya HOM05D005133 ORTHO05D006685 3.7e-127 459.1 408 64.7
GSVIVG01027010001 Vitis vinifera HOM05D005133 ORTHO05D006685 3.7e-127 459.1 408 64.5
CiPaw.02G036200 Carya illinoinensis HOM05D005133 ORTHO05D006685 6.3e-127 458.4 413 64.4
Cfa007878 Carpinus fangiana HOM05D005133 ORTHO05D006685 8.2e-127 458.0 415 64.1
Migut.B01808 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.4e-126 456.4 414 63.3
Lj7C506T5 Lonicera japonica HOM05D005133 ORTHO05D006685 5.3e-126 455.3 411 64.0
TAR375G0148 Trochodendron aralioides HOM05D005133 ORTHO05D006685 3.5e-125 452.6 431 60.1
LjContig00310g0005517 Lotus japonicus HOM05D005133 ORTHO05D006685 5.9e-125 451.8 411 62.8
Rhsim07G0009300 Rhododendron simsii HOM05D005133 ORTHO05D006685 1.0e-124 451.1 423 61.9
Potri.014G091400 Populus trichocarpa HOM05D005133 ORTHO05D006685 1.3e-124 450.7 413 64.2
Manes.01G251600 Manihot esculenta HOM05D005133 ORTHO05D006685 2.9e-124 449.5 416 63.9
DCAR_025229 Daucus carota HOM05D005133 ORTHO05D006685 8.5e-124 448.0 401 61.1
CSS0040148 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 1.9e-123 446.8 419 62.3
TPR.G34211 Trifolium pratense HOM05D005133 ORTHO05D006685 4.2e-123 445.7 422 60.7
Ciclev10020434m.g Citrus clementina HOM05D005133 ORTHO05D006685 1.6e-122 443.7 403 63.5
arahy.Tifrunner.gnm1.ann1.JRPH7J Arachis hypogaea HOM05D005133 ORTHO05D006685 3.6e-122 442.6 437 58.6
HanXRQChr17g0562291 Helianthus annuus HOM05D005133 ORTHO05D006685 3.6e-122 442.6 406 61.1
arahy.Tifrunner.gnm1.ann1.YZ0HQS Arachis hypogaea HOM05D005133 ORTHO05D006685 6.1e-122 441.8 419 60.6
CSS0000155 Camellia sinensis var. sinensis HOM05D005133 ORTHO05D006685 8.0e-122 441.4 406 64.3
Haze_14198 Corylus avellana HOM05D005133 ORTHO05D006685 1.4e-121 440.7 410 62.4
arahy.Tifrunner.gnm1.ann1.ZNWN3Y Arachis hypogaea HOM05D005133 ORTHO05D006685 1.8e-121 440.3 418 60.0
Prupe.2G179100 Prunus persica HOM05D005133 ORTHO05D006685 1.8e-121 440.3 411 61.1
COL.COLO4_06373 Corchorus olitorius HOM05D005133 ORTHO05D006685 5.2e-121 438.7 332 72.6
MD07G1130200 Malus domestica HOM05D005133 ORTHO05D006685 2.6e-120 436.4 389 63.0
Sed0023612 Sechium edule HOM05D005133 ORTHO05D006685 2.6e-120 436.4 403 62.0
ClCG05G014200 Citrullus lanatus HOM05D005133 ORTHO05D006685 9.7e-120 434.5 403 62.5
PGR031G0061 Punica granatum HOM05D005133 ORTHO05D006685 1.7e-119 433.7 416 60.6
SalBow1G3823 Salvia bowleyana HOM05D005133 ORTHO05D006685 1.4e-118 430.6 359 67.7
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.8e-118 430.3 383 62.9
RcHm_v2.0_Chr1g0358181 Rosa chinensis HOM05D005133 ORTHO05D006685 4.1e-118 429.1 425 59.1
Ca_20805_v3 Cicer arietinum L. HOM05D005133 ORTHO05D006685 2.7e-117 426.4 407 60.7
Lalb_Chr19g0138411 Lupinus albus HOM05D005133 ORTHO05D006685 2.2e-116 423.3 420 58.8
QL07p038619 Quercus lobata HOM05D005133 ORTHO05D006685 2.2e-116 423.3 407 60.7
Phvul.011G052300 Phaseolus vulgaris HOM05D005133 ORTHO05D006685 3.8e-116 422.5 407 60.2
TWI34G1432 Tripterygium wilfordii HOM05D005133 ORTHO05D006685 3.8e-116 422.5 412 58.7
VMungo1127G1104 Vigna mungo HOM05D005133 ORTHO05D006685 3.8e-116 422.5 411 60.1
CsaV3_3G008530 Cucumis sativus L. HOM05D005133 ORTHO05D006685 6.5e-116 421.8 386 63.7
Psat7g208960 Pisum sativum HOM05D005133 ORTHO05D006685 6.5e-116 421.8 393 60.1
Oeu015214.1 Olea europaea HOM05D005133 ORTHO05D006685 8.5e-116 421.4 502 52.4
MELO3C006074.2 Cucumis melo HOM05D005133 ORTHO05D006685 4.2e-115 419.1 417 59.7
unitig_0.g335 Utricularia gibba HOM05D005133 ORTHO05D006685 2.7e-114 416.4 422 58.3
FvH4_7g15540 Fragaria vesca HOM05D005133 ORTHO05D006685 6.1e-114 415.2 388 60.3
Sabra14G0066300 Salix brachista HOM05D005133 ORTHO05D006685 6.1e-114 415.2 453 57.4
Aqoxy3G00498 Aquilegia oxysepala HOM05D005133 ORTHO05D006685 8.0e-114 414.8 390 60.5
FAN10G2939 Fragaria x ananassa HOM05D005133 ORTHO05D006685 2.3e-113 413.3 388 60.3
FAN06G1776 Fragaria x ananassa HOM05D005133 ORTHO05D006685 8.8e-113 411.4 388 60.1
FAN10G2725 Fragaria x ananassa HOM05D005133 ORTHO05D006685 8.8e-113 411.4 388 60.1
PSO135G0656 Papaver somniferum HOM05D005133 ORTHO05D006685 4.4e-112 409.1 416 57.0
Cfa003860 Carpinus fangiana HOM05D005133 ORTHO05D006685 6.3e-111 405.2 355 65.4
Haze_15576 Corylus avellana HOM05D005133 ORTHO05D006685 2.0e-109 400.2 394 58.9
Glyma.12G050200 Glycine max HOM05D005133 ORTHO05D006685 5.9e-109 398.7 358 63.1
FAN06G1340 Fragaria x ananassa HOM05D005133 ORTHO05D006685 1.7e-108 397.1 398 57.8
Nn7g37315 Nelumbo nucifera HOM05D005133 ORTHO05D006685 3.8e-108 396.0 406 55.7
Medtr4g068010 Medicago truncatula HOM05D005133 ORTHO05D006685 2.5e-107 393.3 411 56.2
ECA234G4221 Erigeron canadensis HOM05D005133 ORTHO05D006685 7.2e-107 391.7 407 56.3
Gohir.A07G140500 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.0e-105 387.9 379 62.3
Sc01g0003150 Simmondsia chinensis HOM05D005133 ORTHO05D006685 4.0e-105 386.0 415 56.4
EL10Ac1g00344 Beta vulgaris HOM05D005133 ORTHO05D006685 3.4e-104 382.9 391 55.5
CANSAT01G0674 Cannabis sativa HOM05D005133 ORTHO05D006685 2.8e-103 379.8 380 60.8
Haze_15581 Corylus avellana HOM05D005133 ORTHO05D006685 3.7e-103 379.4 392 57.4
THA.LOC104817324 Tarenaya hassleriana HOM05D005133 ORTHO05D006685 4.1e-102 375.9 403 54.6
Lsat_1_v5_gn_4_34900 Lactuca sativa HOM05D005133 ORTHO05D006685 1.2e-101 374.4 427 52.5
Os01g0226500 Oryza sativa ssp. japonica HOM05D005133 ORTHO05D006685 1.2e-101 374.4 403 53.8
AUR62022626 Chenopodium quinoa HOM05D005133 ORTHO05D006685 7.8e-101 371.7 406 56.4
AUR62004420 Chenopodium quinoa HOM05D005133 ORTHO05D006685 6.6e-100 368.6 388 57.2
Hund27238 Selenicereus undatus HOM05D005133 ORTHO05D006685 1.2e-98 364.4 424 53.8
Eucgr.J01063 Eucalyptus grandis HOM05D005133 ORTHO05D006685 1.0e-97 361.3 412 51.5
ATR0626G352 Amborella trichopoda HOM05D005133 ORTHO05D006685 2.3e-97 360.1 400 55.0
Zm00001eb339090 Zea mays HOM05D005133 ORTHO05D006685 2.3e-97 360.1 444 50.7
vmacro20884 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.1e-97 359.8 508 47.6
Aa31LG1G27580 Aethionema arabicum HOM05D005133 ORTHO05D006685 5.8e-96 355.5 412 51.5
AL4G45460 Arabidopsis lyrata HOM05D005133 ORTHO05D006685 5.8e-96 355.5 401 52.1
Sp5g32810 Schrenkiella parvula HOM05D005133 ORTHO05D006685 2.2e-95 353.6 404 51.5
BcaC02g12500 Brassica carinata HOM05D005133 ORTHO05D006685 2.7e-93 346.7 407 51.4
BraA05t19159Z Brassica rapa HOM05D005133 ORTHO05D006685 3.5e-93 346.3 409 51.1
A05p01630 Brassica napus HOM05D005133 ORTHO05D006685 4.6e-93 345.9 411 50.9
C04p01840 Brassica napus HOM05D005133 ORTHO05D006685 1.0e-92 344.7 407 51.4
BcaC02g12707 Brassica carinata HOM05D005133 ORTHO05D006685 5.6e-91 339.0 408 49.8
Thhalv10028732m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 5.8e-88 328.9 408 48.0
Thhalv10001493m.g Eutrema salsugineum HOM05D005133 ORTHO05D006685 1.7e-87 327.4 411 49.1
vmacro13220 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 3.2e-86 323.2 332 58.7
Carub.0004s2888 Capsella rubella HOM05D005133 ORTHO05D006685 5.4e-86 322.4 401 47.4
MBI16_g41624_MAGBIO Magnolia biondii HOM05D005133 ORTHO05D006685 6.0e-85 318.9 409 50.6
CARHR141470 Cardamine hirsuta HOM05D005133 ORTHO05D006685 2.3e-84 317.0 419 47.7
RcHm_v2.0_Chr1g0357891 Rosa chinensis HOM05D005133 ORTHO05D006685 3.4e-80 303.1 378 52.4
RcHm_v2.0_Chr1g0358091 Rosa chinensis HOM05D005133 ORTHO05D006685 1.4e-78 297.7 294 60.2
AT2G46200 Arabidopsis thaliana HOM05D005133 ORTHO05D006685 5.1e-76 289.3 367 49.0
Ah.05g180080 Amaranthus hybridus HOM05D005133 ORTHO05D006685 9.6e-75 285.0 419 47.3
HPP92_023966 Vanilla planifolia HOM05D005133 ORTHO05D006685 1.5e-67 261.2 308 52.3
vmacro22850 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 1.9e-67 260.8 343 50.1
RcHm_v2.0_Chr1g0358051 Rosa chinensis HOM05D005133 ORTHO05D006685 3.1e-65 253.4 355 49.0
Pp3c4_26280 Physcomitrium patens HOM05D005133 ORTHO05D006685 1.4e-62 244.6 474 38.6
CDE09G0708 Ceratophyllum demersum HOM05D005133 ORTHO05D006685 3.2e-62 243.4 321 50.8
PSO478G1127 Papaver somniferum HOM05D005133 ORTHO05D006685 1.6e-61 241.1 243 61.3
Mapoly0001s0322 Marchantia polymorpha HOM05D005133 ORTHO05D006685 6.6e-60 235.7 453 39.3
PSO384G2230 Papaver somniferum HOM05D005133 ORTHO05D006685 1.5e-56 224.6 250 55.6
arahy.Tifrunner.gnm1.ann1.Z00T6Z Arachis hypogaea HOM05D005133 ORTHO05D006685 1.9e-54 217.6 228 55.3
AagrBONN_evm.TU.Sc2ySwM_344.4499 Anthoceros agrestis HOM05D005133 ORTHO05D006685 3.2e-46 190.3 315 41.6
Zm00001eb201120 Zea mays HOM05D005133 ORTHO05D006685 5.1e-36 156.4 152 57.9
Zm00001eb407270 Zea mays HOM05D005133 ORTHO05D006685 5.1e-36 156.4 152 57.9
FAN03G0151 Fragaria x ananassa HOM05D005133 ORTHO05D006685 9.4e-30 135.6 72 81.9
SMO239G0112 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 1.8e-28 131.3 345 33.0
CBR_g45167 Chara braunii HOM05D005133 ORTHO05D006685 1.1e-25 122.1 290 33.1
HanXRQChr04g0107751 Helianthus annuus HOM05D005133 ORTHO05D006685 2.4e-25 120.9 98 74.5
Gohir.A03G093200 Gossypium hirsutum HOM05D005133 ORTHO05D006685 1.1e-22 112.1 171 47.4
SHI13349 Sapria himalayana HOM05D005133 ORTHO05D006685 1.9e-22 111.3 143 44.8
Glyma.11G125567 Glycine max HOM05D005133 ORTHO05D006685 2.7e-21 107.5 127 48.0
vmacro01745 Vaccinium macrocarpon HOM05D005133 ORTHO05D006685 2.3e-20 104.4 150 44.7
Rhsim01G0168000 Rhododendron simsii HOM05D005133 ORTHO05D006685 6.3e-18 96.3 73 78.1
AUR62025074 Chenopodium quinoa HOM05D005133 ORTHO05D006685 6.5e-15 86.3 65 69.2
SMO117G0103 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.5e-14 84.3 181 38.1
C04p01870 Brassica napus HOM05D005133 ORTHO05D006685 4.4e-11 73.6 39 74.4
SMO114G0022 Selaginella moellendorffii HOM05D005133 ORTHO05D006685 2.2e-10 71.2 95 46.3
FvH4_2g33570 Fragaria vesca HOM05D000073 ORTHO05D015767 2.7e-08 64.3 58 62.1
MELO3C030134.2 Cucumis melo HOM05D005133 ORTHO05D006685 8.5e-07 59.3 52 71.2
MELO3C033909.2 Cucumis melo HOM05D005133 ORTHO05D020525 1.1e-06 58.9 74 56.8
Rhsim01G0167900 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.9e-06 58.2 56 64.3
MELO3C031967.2 Cucumis melo HOM05D005133 ORTHO05D165940 9.4e-06 55.8 56 67.9


User provided reference genes

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