Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 0.0e+00 1102.4 566 100.0
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 2.2e-289 998.4 635 84.3
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.2e-241 839.0 593 75.7
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.1e-232 810.1 594 74.9
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 2.7e-223 778.9 590 72.0
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 3.6e-159 565.8 599 54.8
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 1.8e-158 563.5 515 60.8
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 1.1e-152 544.3 588 55.6
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 3.3e-152 542.7 606 55.1
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 1.8e-150 537.0 318 89.0
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 1.7e-148 530.4 601 54.1
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 1.1e-144 517.7 514 57.6
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 1.9e-144 516.9 516 57.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 3.3e-144 516.2 611 51.9
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 9.6e-144 514.6 600 51.3
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 1.2e-143 514.2 514 57.2
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 6.2e-143 511.9 571 53.9
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 7.1e-139 498.4 572 51.0
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 5.1e-137 492.3 591 50.1
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.1e-135 486.9 585 52.3
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 8.1e-135 485.0 546 51.8
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 7.6e-133 478.4 587 50.9
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 2.5e-128 463.4 590 48.8
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 8.1e-127 458.4 559 50.4
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 1.4e-126 457.6 590 48.5
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 1.2e-125 454.5 584 47.4
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 3.4e-125 453.0 578 47.6
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 8.4e-124 448.4 593 47.4
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 8.4e-124 448.4 555 47.7
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 1.9e-123 447.2 577 47.5
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 4.2e-123 446.0 583 47.7
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 1.6e-122 444.1 701 43.9
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 2.1e-122 443.7 574 47.0
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 1.0e-121 441.4 614 45.3
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 3.9e-121 439.5 570 47.4
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 1.1e-120 438.0 581 47.7
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 1.9e-120 437.2 569 49.0
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 3.3e-120 436.4 580 47.9
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 3.3e-120 436.4 586 47.6
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 4.3e-120 436.0 588 47.3
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.3e-119 434.5 571 47.8
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 1.3e-119 434.5 621 46.7
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.7e-119 433.0 540 47.8
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 2.0e-117 427.2 561 49.6
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.4e-117 426.4 573 47.8
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 2.2e-116 423.7 644 43.6
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.1e-115 421.4 581 47.0
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 3.2e-115 419.9 581 47.0
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 4.2e-115 419.5 576 46.5
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.5e-115 419.1 576 46.5
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 7.1e-115 418.7 594 46.3
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 9.3e-115 418.3 598 46.0
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 2.3e-113 413.7 599 46.1
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 6.7e-113 412.1 571 49.0
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.9e-112 410.6 578 46.2
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 1.6e-111 407.5 610 44.3
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 3.7e-111 406.4 580 45.7
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 8.2e-111 405.2 615 43.4
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 1.4e-110 404.4 595 43.7
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 3.1e-110 403.3 589 45.0
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 6.9e-110 402.1 594 44.4
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 7.6e-109 398.7 615 44.6
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.3e-108 397.9 554 44.9
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 1.7e-108 397.5 595 44.0
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 1.6e-106 391.0 548 44.2
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 3.0e-105 386.7 592 44.4
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 5.7e-104 382.5 561 45.3
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 3.7e-103 379.8 594 43.1
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 8.2e-103 378.6 605 43.0
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.2e-103 378.6 605 43.0
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.1e-102 376.7 605 43.0
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 2.0e-101 374.0 603 43.3
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.4e-101 373.2 607 42.7
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 7.7e-101 372.1 501 49.7
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.9e-99 367.5 574 44.1
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.5e-99 367.1 567 43.4
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 7.2e-99 365.5 565 43.2
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 1.2e-98 364.8 567 43.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 1.6e-98 364.4 570 43.5
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 2.7e-98 363.6 567 42.9
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 3.6e-98 363.2 569 43.1
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 4.6e-98 362.8 567 43.0
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 4.6e-98 362.8 567 42.9
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 7.9e-98 362.1 564 45.0
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.3e-97 360.5 480 49.2
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 3.9e-97 359.8 567 43.2
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 3.3e-96 356.7 561 43.5
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 3.3e-96 356.7 549 45.9
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 7.4e-96 355.5 564 44.1
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 7.4e-96 355.5 564 44.1
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 7.4e-96 355.5 564 44.1
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 7.4e-96 355.5 575 42.3
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 8.2e-95 352.1 573 42.4
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 1.1e-94 351.7 568 42.4
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 1.4e-94 351.3 574 43.7
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.1e-94 348.6 528 42.0
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 1.3e-92 344.7 596 41.1
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 7.9e-90 335.5 289 62.6
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 1.5e-88 331.3 592 40.2
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 7.4e-88 328.9 607 39.9
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.4e-86 324.7 302 59.6
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 5.9e-85 319.3 593 41.0
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 2.2e-84 317.4 584 40.2
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.8e-84 316.6 463 48.2
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 6.5e-84 315.8 490 43.3
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 1.1e-83 315.1 563 39.3
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 4.2e-83 313.2 557 40.4
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 9.7e-80 302.0 495 40.8
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 2.8e-79 300.4 585 35.7
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 2.4e-78 297.4 571 40.1
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 1.6e-77 294.7 494 40.3
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 8.8e-73 278.9 524 41.6
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 2.6e-72 277.3 616 35.4
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 9.8e-72 275.4 417 44.4
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 1.7e-71 274.6 576 35.8
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 1.1e-70 271.9 420 45.5
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 4.4e-64 250.0 534 37.6
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 9.2e-62 242.3 225 59.6
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 3.5e-61 240.4 349 43.8
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 7.0e-54 216.1 268 46.3
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 7.0e-54 216.1 286 43.4
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.0e-53 214.5 268 45.9
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.5e-53 213.8 268 46.3
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 5.0e-52 209.9 565 32.6
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.1e-50 204.5 420 38.1
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.4e-49 201.8 270 45.2
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 4.0e-49 200.3 417 38.1
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 1.2e-45 188.7 309 37.9
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.3e-39 168.7 325 39.7
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 1.1e-33 149.1 117 61.5
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.1e-33 147.5 280 38.2
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 3.1e-33 147.5 401 33.2
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 4.0e-33 147.1 153 50.3
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 2.0e-32 144.8 358 35.8
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 5.8e-32 143.3 164 48.8
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 8.4e-31 139.4 125 52.8
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 3.2e-30 137.5 385 33.8
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 9.2e-30 136.0 315 29.2
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 3.0e-28 131.0 101 64.4
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 1.1e-25 122.5 152 50.0
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.4e-25 122.1 118 53.4
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 6.4e-23 113.2 100 63.0
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 2.3e-20 104.8 87 52.9
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.0e-17 94.0 130 45.4
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 9.0e-17 92.8 284 27.8
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 1.5e-16 92.0 162 35.8
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 6.7e-12 76.6 125 44.0
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 4.2e-06 57.4 70 47.1
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 5.5e-06 57.0 70 47.1


User provided reference genes

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