Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 2250.3 1126 100.0
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 2236.1 1126 99.4
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 2159.8 1124 95.9
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 2072.0 1197 88.6
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 2068.1 1162 90.4
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 2015.7 1079 93.6
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1919.1 1130 83.9
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1897.5 1124 82.9
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1880.5 1127 81.8
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1877.1 1132 82.5
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1868.6 1129 81.6
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1868.6 1136 81.7
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1859.3 1129 81.2
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1859.0 1130 82.0
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1858.6 1127 81.2
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1853.6 1131 80.5
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1851.6 1127 80.5
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1851.3 1127 80.6
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1851.3 1129 80.6
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1850.5 1128 81.7
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1847.4 1130 81.7
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1846.2 1129 80.8
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1841.6 1100 82.2
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1840.9 1130 80.7
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1840.5 1155 79.6
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1840.5 1130 80.7
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1840.1 1129 80.7
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1839.7 1133 80.8
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1839.3 1125 81.2
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1837.0 1127 79.9
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1833.9 1132 79.8
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1832.4 1130 80.3
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1828.1 1128 80.9
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1827.4 1129 80.0
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1819.7 1134 79.7
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1818.9 1132 79.5
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1815.8 1133 79.2
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1812.3 1129 79.1
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1810.4 1127 79.1
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1807.3 1144 78.4
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1805.8 1121 79.7
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1804.6 1127 79.3
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1804.3 1129 78.8
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1131 79.1
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1803.9 1081 82.5
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1800.4 1130 78.6
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1799.6 1129 78.2
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1797.7 1128 78.5
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1795.0 1129 78.9
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1795.0 1147 77.9
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1794.6 1129 77.9
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1794.2 1127 79.0
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1794.2 1190 75.7
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1792.3 1130 77.9
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1789.2 1132 78.0
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1779.2 1125 78.2
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1768.4 1130 78.8
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1768.4 1125 78.1
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1766.1 1127 77.6
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1761.5 1126 77.5
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1758.0 1128 76.8
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1754.2 1126 77.9
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1753.8 1124 77.7
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1753.4 1190 74.4
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1741.5 1129 76.9
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1731.1 1128 76.4
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1719.5 1124 76.0
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1717.6 1321 68.7
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1704.5 1078 78.1
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1702.6 1040 80.9
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1701.4 1128 75.0
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1695.6 1159 75.5
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1681.4 1129 75.1
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1679.8 1259 69.6
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1673.3 1126 73.7
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1671.8 1126 73.7
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1662.5 1147 72.9
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1656.3 1126 73.3
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1652.5 1126 73.2
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1643.6 1127 72.8
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1638.2 1128 72.7
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1635.9 1126 73.0
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1635.9 1126 73.0
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1619.8 1164 72.1
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1619.0 1126 72.6
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1618.2 1126 72.6
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1576.2 1159 69.8
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1543.5 956 79.9
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 1536.9 1126 69.0
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1533.1 1126 68.3
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1531.9 1121 69.5
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 1523.5 1126 68.2
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1512.7 1168 67.9
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1461.0 1110 67.8
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1454.9 837 85.4
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1452.2 842 84.9
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1437.6 871 81.2
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1390.2 983 72.6
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1366.7 862 77.3
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1270.8 1132 60.2
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 0.0e+00 1214.9 825 72.8
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1211.1 787 76.0
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1182.5 688 84.3
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1137.5 1140 51.9
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 1.3e-309 1066.6 1526 42.7
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.1e-305 1053.5 1127 49.9
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 5.5e-300 1034.6 1152 48.9
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 6.5e-285 984.6 1148 46.5
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 3.5e-270 935.6 1380 39.1
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 4.5e-270 935.3 671 68.1
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.0e-261 905.2 585 78.8
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 8.8e-258 894.4 680 68.7
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 3.7e-256 889.0 532 83.3
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 1.8e-247 860.1 743 60.2
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 4.7e-211 739.2 454 78.9
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 5.3e-202 709.1 554 66.2
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 6.4e-200 702.2 435 80.5
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 3.4e-185 653.3 434 72.8
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.8e-179 633.6 593 53.3
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 6.3e-147 526.2 454 60.1
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 6.3e-139 499.6 312 78.2
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 2.8e-131 474.2 326 79.1
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.0e-129 468.0 380 68.2
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 1.4e-106 392.1 1078 29.8
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 7.1e-90 336.7 770 31.7
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 9.6e-87 326.2 1453 23.1
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 6.0e-81 307.0 293 55.6
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.4e-77 295.0 232 69.0
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 2.4e-77 295.0 190 76.3
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 8.7e-72 276.6 194 69.1
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 2.2e-67 261.9 198 72.2
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 9.3e-66 256.5 297 50.5
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 1.5e-63 249.2 313 41.9
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 9.7e-63 246.5 206 59.7
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 7.2e-58 230.3 166 65.7
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 1.4e-56 226.1 212 57.5
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.3e-54 219.5 595 32.6
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 3.4e-52 211.5 172 61.0
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 1.1e-47 196.4 218 55.0
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.7e-47 194.1 224 45.5
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 3.1e-45 188.3 218 51.8
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 2.1e-41 175.6 327 39.8
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 3.5e-36 158.3 773 24.6
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 4.0e-32 144.8 87 81.6
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 4.0e-32 144.8 87 81.6
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 8.8e-32 143.7 183 48.1
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.7e-27 129.4 85 68.2
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.0e-27 127.9 85 72.9
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 5.7e-23 114.4 139 50.4
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.5e-23 114.0 161 44.1
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 1.2e-20 106.7 74 70.3
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 3.5e-20 105.1 65 75.4
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.0e-19 103.6 161 40.4
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 1.1e-18 100.1 67 67.2
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 3.6e-17 95.1 69 66.7
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 4.7e-17 94.7 95 55.8
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 6.1e-17 94.4 60 76.7
CSS0021987 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 9.8e-15 87.0 80 58.8
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.4e-13 83.2 56 71.4
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 1.6e-12 79.7 67 56.7
Ah.05g180910 Amaranthus hybridus HOM05D000862 ORTHO05D000943 5.9e-12 77.8 49 77.6
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 7.8e-12 77.4 45 77.8
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 1.3e-11 76.6 56 62.5
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 2.5e-10 72.4 51 66.7
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 3.3e-10 72.0 48 70.8
CSS0028965 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 7.3e-10 70.9 43 69.8
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 1.4e-08 66.6 70 50.0
Nn1g01614 Nelumbo nucifera HOM05D004297 ORTHO05D005213 2.0e-07 62.8 41 65.9
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 2.0e-07 62.8 34 73.5


User provided reference genes

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