Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 0.0e+00 1672.9 826 100.0
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 0.0e+00 1635.9 826 97.5
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 0.0e+00 1523.8 826 91.5
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 0.0e+00 1410.2 849 82.0
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 0.0e+00 1394.0 839 82.4
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 0.0e+00 1205.3 773 78.3
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 0.0e+00 1102.8 858 68.3
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 8.7e-295 1016.9 840 61.0
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 1.1e-292 1010.0 817 61.8
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 5.2e-292 1007.7 837 59.3
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 6.9e-292 1007.3 864 58.9
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.9e-289 999.2 793 61.2
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 4.2e-289 998.0 831 60.3
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 9.3e-289 996.9 841 59.6
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 3.6e-285 984.9 784 60.8
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 6.9e-284 980.7 785 61.9
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 5.4e-281 971.1 813 60.1
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 5.4e-281 971.1 820 59.8
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.3e-279 966.5 815 58.7
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 4.3e-278 961.4 793 59.3
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 9.6e-278 960.3 775 61.7
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 2.0e-275 952.6 837 57.7
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 6.0e-272 941.0 813 58.2
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 7.9e-272 940.6 823 57.4
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 3.0e-271 938.7 832 58.1
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 2.8e-269 932.2 793 58.6
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 3.7e-269 931.8 820 57.9
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 6.9e-268 927.5 819 56.5
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 3.4e-267 925.2 827 56.2
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 3.8e-266 921.8 827 55.9
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 8.4e-266 920.6 814 57.4
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 4.2e-265 918.3 824 55.8
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 5.5e-265 917.9 773 58.2
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.3e-263 913.3 788 58.2
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 3.9e-263 911.8 827 56.0
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 6.3e-261 904.4 772 57.8
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 2.4e-260 902.5 820 56.6
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 6.9e-260 901.0 825 55.0
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 9.0e-260 900.6 811 56.2
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.8e-258 895.2 807 55.1
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.5e-257 892.5 828 56.6
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 1.2e-256 890.2 769 58.5
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 1.6e-256 889.8 828 56.0
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 4.6e-256 888.3 789 57.2
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.0e-255 887.1 804 55.7
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 2.3e-255 885.9 834 55.2
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 8.8e-255 884.0 786 57.6
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 4.3e-254 881.7 820 56.5
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 4.8e-253 878.2 821 55.2
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.5e-251 873.2 785 57.2
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 3.4e-251 872.1 727 60.2
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.5e-251 871.7 822 55.0
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 7.7e-251 870.9 822 55.0
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 1.0e-250 870.5 789 56.5
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 1.7e-250 869.8 766 56.7
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 6.5e-250 867.8 752 55.3
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 1.1e-249 867.1 827 54.2
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 2.5e-249 865.9 841 53.3
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.2e-248 863.6 770 55.7
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 2.1e-248 862.8 824 54.1
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.4e-247 860.1 785 54.8
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 8.8e-247 857.4 788 55.5
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.5e-246 856.7 768 54.7
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 2.6e-246 855.9 838 52.1
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 6.3e-245 851.3 818 53.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 2.4e-244 849.4 776 56.6
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.1e-244 849.0 785 55.2
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 4.5e-243 845.1 796 54.1
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.3e-242 843.6 809 52.9
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.7e-242 843.2 841 51.5
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 1.4e-241 840.1 808 54.7
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 7.2e-241 837.8 796 53.3
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 9.4e-241 837.4 838 52.7
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 6.7e-239 831.2 823 53.0
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.4e-238 828.6 779 55.2
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 1.1e-236 823.9 824 52.4
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-236 822.8 823 51.4
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 5.9e-235 818.1 798 52.5
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.3e-234 817.0 818 52.7
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 5.0e-234 815.1 810 52.6
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.5e-233 811.6 828 50.0
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 2.7e-232 809.3 799 50.3
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 4.7e-232 808.5 785 53.0
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.8e-231 806.6 744 56.9
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 2.3e-231 806.2 817 52.4
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.0e-231 805.8 822 52.1
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 8.8e-231 804.3 871 48.3
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.2e-230 803.9 781 52.9
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 2.4e-228 796.2 782 52.4
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 2.4e-228 796.2 796 51.5
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 2.4e-228 796.2 796 51.5
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 2.4e-228 796.2 799 52.2
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 7.0e-228 794.7 819 50.9
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 7.0e-228 794.7 780 51.0
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 2.0e-227 793.1 782 52.2
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 2.7e-227 792.7 817 51.0
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 3.8e-226 788.9 808 52.4
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.2e-225 785.4 841 49.2
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.6e-224 783.5 680 59.1
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 7.5e-222 774.6 713 56.7
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 4.8e-221 771.9 779 51.1
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 1.6e-219 766.9 805 49.9
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 1.1e-217 760.8 707 56.2
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 3.6e-216 755.7 805 49.4
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.4e-215 753.8 828 47.7
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.2e-213 746.5 730 53.6
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.9e-213 745.3 653 57.6
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 2.0e-211 740.0 818 46.8
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.8e-210 735.7 675 55.6
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 5.6e-209 731.9 815 46.7
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 5.4e-204 715.3 870 45.3
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.0e-202 708.8 666 52.9
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 7.3e-201 704.9 823 45.1
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 8.9e-199 698.0 651 55.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 6.0e-195 685.3 835 44.4
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.5e-190 670.6 798 44.4
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 2.5e-185 653.3 945 41.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 7.1e-180 635.2 781 41.6
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 2.6e-174 616.7 690 48.0
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.4e-173 611.7 516 57.8
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 4.3e-169 599.4 614 52.0
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 6.7e-162 575.5 710 45.4
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 6.9e-159 565.5 718 44.3
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.4e-148 531.2 384 65.1
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 6.5e-133 479.2 459 52.7
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.6e-131 473.4 715 39.3
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.0e-130 471.9 720 38.9
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.8e-130 471.1 531 46.0
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 5.9e-126 456.1 341 65.4
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 1.5e-121 441.4 337 64.7
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 8.3e-104 382.5 421 48.2
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 3.1e-103 380.6 794 31.0
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 7.0e-103 379.4 327 57.8
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 8.6e-101 372.5 592 37.2
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 4.9e-96 356.7 919 27.9
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 8.0e-91 339.3 402 45.8
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.0e-85 322.4 455 38.5
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.6e-83 313.9 342 48.0
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 2.0e-81 308.1 339 47.2
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 2.6e-73 281.2 299 48.8
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 2.6e-65 254.6 377 38.2
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 1.3e-59 235.7 199 57.3
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 6.9e-58 229.9 257 47.9
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 4.8e-51 207.2 175 58.3
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 2.4e-47 194.9 178 56.7
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 1.5e-28 132.5 116 49.1
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.1e-23 116.3 144 44.4
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-20 106.3 104 50.0
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.5e-20 105.9 87 64.4
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.5e-20 105.1 148 36.5
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 6.1e-14 84.0 66 51.5
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 2.0e-12 79.0 104 44.2
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 4.1e-10 71.2 128 29.7
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 9.1e-10 70.1 66 54.5
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 2.6e-09 68.6 35 82.9
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 4.5e-09 67.8 44 61.4
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 5.9e-09 67.4 47 63.8
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 1.0e-08 66.6 73 47.9
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 8.0e-06 57.0 198 26.8


User provided reference genes

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