Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 2.8e-302 1041.2 540 100.0
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 5.8e-300 1033.5 540 99.4
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.1e-295 1019.2 540 98.1
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 1.7e-267 925.6 541 86.3
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 3.5e-260 901.4 540 85.7
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 7.2e-258 893.6 540 85.2
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.8e-243 844.7 512 86.3
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 4.3e-210 734.9 541 69.1
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.1e-204 716.1 540 67.0
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.1e-202 710.3 541 67.5
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 1.1e-202 710.3 541 67.5
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 5.6e-202 708.0 540 65.9
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.8e-200 703.0 539 65.9
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 1.2e-199 700.3 539 66.4
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 7.6e-199 697.6 539 65.7
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 9.9e-199 697.2 539 65.9
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.9e-197 693.0 542 65.3
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 9.3e-197 690.6 539 65.3
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 2.1e-196 689.5 547 65.1
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.0e-195 687.2 547 64.9
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 6.7e-195 684.5 541 66.7
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 5.6e-194 681.4 540 64.4
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 8.1e-193 677.6 541 64.5
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 3.4e-191 672.2 539 62.9
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 5.8e-191 671.4 540 62.8
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 9.9e-191 670.6 537 64.4
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.3e-186 655.2 539 63.8
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 7.4e-186 654.4 546 63.0
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 1.3e-185 653.7 539 63.3
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 3.7e-185 652.1 537 62.4
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 1.1e-184 650.6 543 62.4
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 2.4e-184 649.4 546 62.8
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 5.3e-184 648.3 540 62.2
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 6.9e-184 647.9 539 62.7
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 1.2e-183 647.1 540 62.4
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 1.5e-183 646.7 546 62.8
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 2.0e-183 646.4 537 62.9
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 2.0e-183 646.4 527 62.4
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 3.4e-183 645.6 536 63.2
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.2e-182 642.9 543 62.1
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 4.9e-182 641.7 537 61.1
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 8.4e-182 641.0 539 61.6
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.5e-181 639.4 536 61.6
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 9.3e-181 637.5 502 64.1
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 2.7e-180 636.0 502 63.5
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.3e-179 633.6 540 60.7
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 2.3e-179 632.9 531 60.3
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.9e-179 632.1 541 60.4
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 5.1e-179 631.7 500 63.4
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.9e-178 629.8 537 60.0
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 4.3e-178 628.6 541 59.1
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 7.4e-178 627.9 532 61.7
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 1.3e-177 627.1 503 63.2
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 3.7e-177 625.5 542 60.0
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 6.3e-177 624.8 543 59.7
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 4.1e-176 622.1 526 62.5
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 4.1e-176 622.1 543 59.5
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 6.9e-176 621.3 538 59.5
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 2.6e-175 619.4 541 59.5
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 1.7e-174 616.7 538 59.3
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 1.7e-174 616.7 538 59.5
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.1e-173 614.0 531 60.5
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.1e-173 614.0 535 60.4
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 1.9e-173 613.2 538 58.7
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 7.2e-173 611.3 542 59.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 6.7e-171 604.7 545 59.3
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.1e-170 604.0 545 58.9
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 5.3e-168 595.1 542 57.0
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 3.4e-167 592.4 538 59.1
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.0e-166 590.9 533 58.5
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-166 590.5 502 60.2
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.9e-166 589.3 502 60.0
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 3.8e-166 589.0 539 57.0
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.0e-166 588.6 502 60.2
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 6.5e-166 588.2 546 55.1
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.9e-165 586.6 502 59.8
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 2.5e-165 586.3 548 57.3
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.5e-165 585.1 502 60.0
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.6e-164 583.6 402 71.9
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.0e-162 576.6 543 55.4
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 3.3e-162 575.9 542 55.4
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 9.7e-162 574.3 538 56.7
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.3e-161 573.9 545 54.5
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.3e-161 573.9 539 56.2
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 4.8e-161 572.0 542 56.6
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 6.3e-161 571.6 545 54.9
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.4e-160 570.5 545 55.0
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 2.4e-160 569.7 547 54.8
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.5e-159 567.0 503 58.3
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 3.4e-159 565.8 547 54.7
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 4.5e-159 565.5 547 54.5
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 3.2e-157 559.3 541 54.3
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 8.0e-156 554.7 546 53.5
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 1.4e-155 553.9 534 55.4
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 3.0e-155 552.7 552 52.9
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.1e-154 550.8 543 53.8
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 3.7e-153 545.8 528 53.8
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 7.7e-151 538.1 550 54.2
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.0e-150 537.7 550 54.0
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 1.5e-149 533.9 568 52.3
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 1.6e-135 487.3 415 59.5
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 4.0e-131 472.6 410 58.5
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 8.6e-126 454.9 409 56.7
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 4.7e-124 449.1 552 46.7
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 2.2e-121 440.3 544 46.1
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 2.7e-119 433.3 539 47.5
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 6.0e-119 432.2 576 44.1
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 6.4e-113 412.1 496 48.0
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.1e-107 394.8 356 57.0
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.4e-104 383.6 318 62.3
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 2.1e-103 380.6 465 46.7
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.6e-100 369.8 416 50.7
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 8.1e-100 368.6 350 54.3
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.2e-98 364.8 528 39.0
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 4.7e-92 342.8 509 38.9
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.4e-88 331.3 516 38.2
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.7e-86 324.3 315 56.2
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.9e-85 320.9 416 45.7
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.5e-85 320.5 265 61.5
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 5.8e-82 309.3 487 37.6
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 6.7e-78 295.8 499 38.9
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 1.9e-77 294.3 499 38.9
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 3.7e-76 290.0 344 49.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 1.6e-63 248.1 263 52.9
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 5.7e-61 239.6 190 62.6
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-58 231.9 199 62.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 5.9e-58 229.6 195 63.1
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 8.2e-36 156.0 109 74.3
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 3.1e-35 154.1 188 48.4
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 3.8e-33 147.1 111 64.9
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 2.0e-29 134.8 111 61.3
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 9.7e-29 132.5 507 27.2
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 1.7e-28 131.7 450 28.9
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 3.7e-28 130.6 165 49.7
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-25 122.5 103 59.2
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 3.8e-25 120.6 268 29.1
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 5.0e-25 120.2 85 63.5
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 4.2e-24 117.1 106 55.7
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.4e-21 107.5 102 53.9
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 5.7e-21 106.7 95 56.8
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 3.7e-20 104.0 501 24.0
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 1.4e-19 102.1 88 63.6
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 1.7e-17 95.1 88 59.1
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 6.6e-17 93.2 293 29.4
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 8.0e-15 86.3 95 44.2
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 3.5e-10 70.9 571 22.2
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 5.9e-10 70.1 85 47.1
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 4.3e-08 63.9 77 46.8
SGA_v2.0_scaffold2881G54235 Striga asiatica HOM05D001925 ORTHO05D005701 1.6e-07 62.0 49 63.3
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.1e-07 61.6 47 63.8


User provided reference genes

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