Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 0.0e+00 1370.9 671 100.0
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 0.0e+00 1273.8 671 94.5
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 0.0e+00 1234.9 671 91.5
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 0.0e+00 1177.5 671 87.2
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1161.7 671 85.4
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 0.0e+00 1160.2 671 84.9
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 0.0e+00 1131.3 693 82.1
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 3.5e-262 908.3 665 68.6
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 4.6e-262 907.9 662 66.8
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 1.0e-261 906.7 682 67.2
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 3.3e-260 901.7 676 66.6
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 6.9e-258 894.0 670 66.3
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 1.7e-256 889.4 668 66.8
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 3.0e-253 878.6 668 65.7
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 2.0e-249 865.9 664 65.4
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 2.6e-249 865.5 679 64.5
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 9.9e-249 863.6 667 65.4
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.9e-247 859.4 687 63.8
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.9e-247 859.4 687 63.8
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.4e-247 859.0 661 64.3
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 2.4e-247 859.0 667 63.7
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 1.3e-245 853.2 662 65.1
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 1.8e-245 852.8 669 64.3
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 3.0e-245 852.0 688 63.2
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 3.9e-245 851.7 669 63.2
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 6.7e-245 850.9 661 64.0
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 1.1e-244 850.1 668 63.2
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 2.5e-244 849.0 662 64.5
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 2.5e-244 849.0 661 63.4
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.3e-244 848.2 661 63.5
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 1.6e-243 846.3 671 64.4
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 4.8e-243 844.7 671 63.5
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 1.4e-242 843.2 685 61.9
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 5.3e-242 841.3 668 63.3
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.6e-241 839.0 696 60.8
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 2.6e-241 839.0 659 64.3
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.1e-239 833.6 660 63.9
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 1.9e-239 832.8 664 63.0
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 1.9e-239 832.8 676 62.1
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 7.1e-239 830.9 678 62.2
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 1.6e-238 829.7 669 62.3
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 2.7e-238 828.9 659 64.3
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.7e-238 828.9 678 62.1
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 1.0e-237 827.0 663 62.9
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 1.1e-236 823.5 672 61.8
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.5e-236 823.2 664 63.1
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 3.3e-236 822.0 672 61.8
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 5.7e-236 821.2 672 61.2
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 1.1e-234 817.0 661 62.9
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.2e-233 813.5 667 62.5
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 4.5e-233 811.6 672 62.9
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 4.5e-233 811.6 671 62.9
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 5.9e-233 811.2 665 63.0
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 7.6e-233 810.8 687 60.6
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 1.7e-232 809.7 630 63.5
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 3.9e-229 798.5 667 60.1
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.5e-228 796.6 669 59.8
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 7.4e-228 794.3 725 58.6
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 6.3e-227 791.2 665 61.2
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 4.1e-226 788.5 665 62.1
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 4.1e-226 788.5 673 60.0
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 1.0e-224 783.9 663 61.4
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.3e-224 783.5 672 61.8
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 2.9e-224 782.3 660 60.9
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 8.5e-224 780.8 668 60.5
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 1.1e-223 780.4 689 58.3
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 9.4e-223 777.3 663 59.3
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 7.9e-222 774.2 663 59.9
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 7.9e-222 774.2 664 59.5
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 5.1e-221 771.5 676 59.5
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 6.7e-221 771.2 680 59.3
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 4.4e-220 768.5 669 58.6
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 7.4e-220 767.7 661 59.3
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 9.7e-220 767.3 679 58.0
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 1.2e-217 760.4 677 58.6
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 2.6e-217 759.2 668 58.5
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 4.5e-217 758.4 670 58.7
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.3e-216 756.9 656 59.3
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 1.7e-216 756.5 658 59.1
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.1e-215 753.8 669 59.5
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 5.5e-215 751.5 671 57.2
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 6.7e-213 744.6 666 58.4
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 9.7e-212 740.7 634 59.9
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 6.3e-211 738.0 618 60.8
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 5.3e-202 708.4 664 54.8
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 7.0e-202 708.0 674 55.8
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 9.1e-202 707.6 489 71.6
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 2.9e-192 676.0 667 53.5
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 1.8e-189 666.8 561 60.8
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 3.1e-186 656.0 475 67.4
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 7.3e-175 618.2 647 50.1
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 2.6e-172 609.8 653 51.1
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 1.1e-170 604.4 667 48.7
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 2.1e-153 547.0 504 55.4
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 4.9e-147 525.8 619 47.3
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 9.3e-146 521.5 455 59.1
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 1.4e-141 507.7 384 64.6
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 1.9e-127 460.7 355 64.5
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 9.6e-127 458.4 354 63.3
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 1.1e-125 454.9 468 50.0
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 9.7e-95 352.1 440 46.8
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 4.7e-73 280.0 265 55.5
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 1.2e-63 248.8 175 65.1
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 2.7e-60 237.7 229 55.5
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 3.0e-59 234.2 215 54.4
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 6.2e-49 199.9 157 63.1
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 3.4e-47 194.1 119 81.5
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 3.4e-47 194.1 129 68.2
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 1.1e-45 189.1 141 62.4
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 1.6e-44 185.3 125 72.0
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 7.8e-44 183.0 190 52.1
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 3.0e-35 154.5 180 45.0
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 1.3e-30 139.0 74 83.8
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 1.0e-27 129.4 136 49.3
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 4.3e-26 124.0 64 85.9
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 4.2e-21 107.5 82 62.2


User provided reference genes

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