Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 4.2e-184 647.9 325 100.0
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 5.3e-179 630.9 325 97.5
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.1e-176 623.2 325 96.0
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 1.7e-169 599.4 325 92.3
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 4.6e-167 591.3 325 91.1
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 5.8e-162 574.3 324 87.3
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 1.1e-160 570.1 378 78.0
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 2.8e-140 502.3 319 77.7
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 1.4e-139 500.0 326 75.8
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 4.1e-139 498.4 326 75.5
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 3.4e-138 495.4 322 75.2
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 1.1e-136 490.3 320 75.6
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 3.2e-136 488.8 319 76.2
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 7.9e-135 484.2 328 73.2
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 6.7e-134 481.1 322 72.7
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 6.7e-134 481.1 319 74.9
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 2.0e-133 479.6 316 74.1
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 7.4e-133 477.6 321 73.2
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 2.4e-131 472.6 317 71.3
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 9.1e-131 470.7 319 70.8
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 1.6e-130 469.9 321 73.8
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 2.2e-129 466.1 329 69.9
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 8.5e-129 464.2 321 72.6
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.5e-128 462.6 320 72.8
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 2.5e-128 462.6 317 71.6
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 3.2e-128 462.2 316 71.2
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 4.2e-128 461.8 320 72.8
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.2e-128 461.1 325 69.8
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 1.2e-127 460.3 322 70.5
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 1.6e-127 459.9 325 70.2
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.1e-127 459.5 320 72.8
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 2.1e-127 459.5 325 68.9
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 2.7e-127 459.1 319 71.2
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 2.7e-127 459.1 317 71.3
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 2.7e-127 459.1 351 66.7
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.6e-127 458.8 317 71.0
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 3.6e-127 458.8 321 69.8
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 4.7e-127 458.4 320 70.6
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 8.0e-127 457.6 317 71.0
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 8.0e-127 457.6 314 72.6
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 1.4e-126 456.8 317 71.3
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.4e-126 456.8 317 71.0
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 1.8e-126 456.4 323 70.3
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 1.8e-126 456.4 316 70.6
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.3e-126 456.1 319 70.8
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 2.3e-126 456.1 322 69.9
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 3.0e-126 455.7 316 69.6
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 4.0e-126 455.3 319 70.8
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 5.2e-126 454.9 322 70.8
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 6.7e-126 454.5 322 70.5
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 4.4e-125 451.8 319 70.2
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 7.5e-125 451.1 317 70.7
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 7.5e-125 451.1 322 68.3
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 1.3e-124 450.3 316 70.3
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 1.7e-124 449.9 319 69.9
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 2.2e-124 449.5 323 70.3
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 6.3e-124 448.0 316 70.6
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-123 447.2 319 69.6
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 5.3e-123 444.9 318 70.1
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 7.0e-123 444.5 323 69.7
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 4.5e-122 441.8 321 68.8
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 4.5e-122 441.8 319 67.1
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 7.7e-122 441.0 314 69.7
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 8.5e-121 437.6 308 70.8
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.5e-120 436.8 314 67.5
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.5e-120 436.8 317 67.5
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 9.4e-120 434.1 320 70.0
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 1.2e-119 433.7 315 67.9
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.7e-119 432.6 291 73.9
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 3.6e-119 432.2 316 66.8
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 3.6e-119 432.2 316 66.8
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 6.1e-119 431.4 318 67.3
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 8.0e-119 431.0 322 68.3
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 1.8e-118 429.9 319 65.5
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 6.8e-118 427.9 320 65.6
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.2e-117 427.2 315 65.4
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.6e-117 426.0 335 64.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 7.5e-117 424.5 316 66.1
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 6.3e-116 421.4 319 63.9
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 8.3e-116 421.0 322 67.4
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 8.3e-116 421.0 320 64.1
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 4.1e-115 418.7 345 61.7
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 4.1e-115 418.7 319 63.6
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 9.1e-115 417.5 321 65.7
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 9.1e-115 417.5 321 65.7
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 9.1e-115 417.5 316 65.8
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 1.2e-114 417.2 321 65.7
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 7.7e-114 414.5 321 64.8
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.8e-113 412.1 280 72.9
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 2.5e-112 409.5 317 64.4
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 5.5e-112 408.3 313 63.9
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 7.2e-112 407.9 318 63.2
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 3.6e-111 405.6 333 62.5
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 1.5e-109 400.2 281 69.4
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.4e-107 391.7 320 61.2
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 9.2e-107 391.0 299 64.9
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 2.7e-106 389.4 261 73.2
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 1.2e-103 380.6 271 69.4
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 1.3e-100 370.5 245 73.5
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 3.0e-97 359.4 242 74.4
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 8.6e-97 357.8 318 55.3
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 2.0e-93 346.7 311 57.2
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 7.5e-93 344.7 234 71.4
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 2.2e-92 343.2 234 73.5
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 2.9e-92 342.8 239 69.9
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 3.2e-91 339.3 203 80.8
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 3.3e-88 329.3 246 66.7
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-85 320.9 239 68.6
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 3.5e-82 309.3 234 66.7
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 1.5e-80 303.9 312 51.6
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.2e-74 284.3 239 63.2
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 3.5e-74 282.7 242 63.6
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 3.9e-73 279.3 192 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 6.6e-73 278.5 305 48.5
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 9.6e-64 248.1 193 64.8
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 1.1e-56 224.6 182 62.1
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 1.9e-51 207.2 117 91.5
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 9.3e-51 204.9 131 77.1
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 7.9e-50 201.8 318 40.6
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 3.7e-47 193.0 321 39.3
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 5.9e-37 159.1 321 36.8
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 5.5e-35 152.5 112 66.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 5.5e-35 152.5 112 66.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 5.5e-35 152.5 112 66.1
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 5.5e-35 152.5 108 71.3
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 1.3e-33 147.9 125 55.2
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 3.0e-33 146.7 105 69.5
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 2.5e-32 143.7 127 55.1
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 4.5e-29 132.9 82 75.6
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 3.8e-28 129.8 90 68.9
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 6.7e-25 119.0 80 75.0
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 2.2e-23 114.0 82 72.0
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 9.4e-19 98.6 77 58.4
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 8.8e-17 92.0 85 54.1
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 9.7e-16 88.6 54 74.1
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-12 77.8 62 61.3
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 1.7e-12 77.8 62 61.3
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 2.2e-12 77.4 57 61.4
arahy.Tifrunner.gnm1.ann1.G2MMRU Arachis hypogaea HOM05D005332 ORTHO05D006861 4.1e-06 56.6 40 72.5
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 4.1e-06 56.6 47 61.7


User provided reference genes

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