Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 3.6e-208 728.0 369 100.0
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.1e-200 702.2 369 96.7
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 1.0e-186 656.8 369 90.2
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.2e-180 635.2 369 87.8
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.6e-174 615.5 321 97.2
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 2.5e-169 599.0 346 88.7
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 2.3e-138 496.1 372 73.7
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 1.5e-134 483.4 369 65.6
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 2.0e-134 483.0 371 65.0
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 7.1e-132 474.6 370 64.3
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 4.6e-131 471.9 370 61.4
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.3e-130 469.5 373 64.1
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.9e-130 468.8 369 64.8
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.9e-130 468.8 371 61.7
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 6.7e-130 468.0 371 63.9
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 3.3e-129 465.7 371 63.3
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.3e-129 465.7 372 61.8
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 7.4e-129 464.5 371 64.2
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 1.6e-128 463.4 373 62.5
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 8.2e-128 461.1 370 61.9
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 1.8e-127 459.9 373 62.5
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 4.1e-127 458.8 370 62.2
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.2e-126 457.2 376 61.7
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.5e-126 456.8 369 60.4
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.5e-126 456.8 370 61.4
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.4e-126 455.7 372 61.6
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 3.4e-126 455.7 370 64.3
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 1.3e-125 453.8 370 61.4
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.2e-125 453.0 369 61.5
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.9e-125 452.6 372 61.3
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.8e-125 452.2 371 62.0
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 5.0e-125 451.8 371 60.4
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 5.0e-125 451.8 371 60.9
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.4e-124 450.3 371 60.1
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 3.2e-124 449.1 369 60.7
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.2e-124 449.1 370 61.4
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 7.2e-124 448.0 369 59.3
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.2e-124 448.0 372 61.3
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 7.2e-124 448.0 369 59.6
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.6e-123 446.8 370 61.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.6e-123 446.8 347 67.1
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.6e-123 446.8 370 61.4
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 6.1e-123 444.9 394 61.7
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 7.9e-123 444.5 371 60.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.0e-122 444.1 371 60.1
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.0e-122 444.1 380 58.4
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 1.4e-122 443.7 378 60.3
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 6.7e-122 441.4 371 59.0
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.1e-121 440.7 369 61.0
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 9.7e-121 437.6 372 58.3
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 2.2e-120 436.4 360 61.1
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 2.8e-120 436.0 374 60.4
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.7e-120 435.6 372 58.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 6.3e-120 434.9 370 59.2
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 1.1e-119 434.1 371 59.3
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.4e-119 433.0 371 58.5
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 2.4e-119 433.0 370 57.8
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 6.9e-119 431.4 412 54.4
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.2e-118 430.6 366 58.7
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.4e-118 429.1 371 58.2
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.9e-118 428.3 374 58.3
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 5.9e-118 428.3 373 57.9
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.1e-116 424.1 370 59.7
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.2e-116 422.5 371 58.5
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 4.2e-116 422.2 346 61.6
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 5.5e-116 421.8 370 57.8
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 7.2e-116 421.4 370 57.8
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 6.1e-115 418.3 370 58.4
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 4.4e-113 412.1 369 55.8
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.7e-113 411.8 368 56.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 5.7e-113 411.8 368 56.8
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 5.7e-113 411.8 371 59.6
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.4e-111 407.1 353 59.2
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.4e-111 407.1 399 55.6
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.1e-111 406.0 376 56.6
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 5.3e-111 405.2 376 56.6
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 7.0e-111 404.8 381 57.0
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 9.1e-111 404.4 374 55.3
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 9.1e-111 404.4 365 57.5
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 1.5e-110 403.7 381 56.2
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.5e-110 403.7 346 61.3
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 2.6e-110 402.9 381 55.9
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 3.5e-110 402.5 373 57.4
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 3.5e-110 402.5 370 54.9
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 4.5e-110 402.1 374 56.7
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 4.5e-110 402.1 381 56.2
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 4.5e-110 402.1 371 56.6
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 2.9e-109 399.4 379 56.2
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 3.8e-109 399.1 383 54.6
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.0e-109 398.7 388 53.4
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 6.5e-109 398.3 354 59.3
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 8.5e-109 397.9 375 56.5
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 1.4e-108 397.1 378 55.0
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 2.5e-108 396.4 373 55.5
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 2.5e-108 396.4 359 55.7
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 7.2e-108 394.8 385 55.1
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 3.6e-107 392.5 341 59.5
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 4.7e-107 392.1 384 54.7
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.0e-106 391.0 321 61.4
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 1.0e-106 391.0 381 55.6
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 3.9e-106 389.0 353 59.2
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-105 387.5 356 57.6
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.6e-105 386.3 350 57.1
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 2.2e-104 383.3 373 52.8
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 4.8e-104 382.1 385 54.3
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 8.2e-104 381.3 374 52.9
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 1.1e-103 380.9 354 56.8
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.1e-103 379.4 373 53.1
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 9.4e-100 367.9 358 55.3
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 2.7e-99 366.3 330 56.4
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 2.7e-99 366.3 329 57.4
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.8e-98 363.6 376 51.6
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 4.0e-98 362.5 306 59.8
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 1.4e-95 354.0 306 57.8
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 4.5e-94 349.0 369 51.5
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 5.0e-93 345.5 381 47.5
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 1.5e-92 344.0 355 51.5
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 1.2e-91 340.9 333 56.2
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 2.7e-91 339.7 388 49.2
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.8e-88 329.7 392 46.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 3.7e-80 302.8 263 62.7
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 3.3e-76 289.7 340 45.0
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 7.3e-76 288.5 299 54.5
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.6e-75 287.3 381 41.2
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.1e-71 272.7 241 57.7
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 5.4e-71 272.3 297 51.2
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 2.0e-70 270.4 404 39.1
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 6.0e-70 268.9 280 54.3
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.0e-69 268.1 478 36.6
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.8e-67 260.0 288 51.7
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.4e-66 257.7 233 58.4
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.4e-66 257.7 383 38.1
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 3.4e-65 253.1 260 53.1
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 8.1e-59 231.9 388 34.8
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 7.6e-57 225.3 241 50.6
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.4e-55 220.3 199 52.3
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.8e-51 206.8 204 53.4
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 3.6e-51 206.5 336 36.3
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 5.8e-49 199.1 254 44.1
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.3e-48 198.0 382 33.5
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 2.4e-47 193.7 220 47.7
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.3e-40 171.4 154 53.2
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 9.3e-39 165.2 139 56.1
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.2e-35 152.5 116 62.9
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 1.5e-25 121.3 74 77.0
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 1.1e-23 115.2 428 24.5
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 4.3e-20 103.2 200 31.0
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 9.6e-20 102.1 140 47.1
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.1e-14 82.8 121 41.3
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 4.1e-10 70.1 42 76.2
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.2e-09 68.6 84 45.2
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 1.5e-09 68.2 74 51.4
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.9e-08 63.9 57 56.1
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 3.8e-08 63.5 49 65.3
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 7.9e-06 55.8 59 47.5


User provided reference genes

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