Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 0.0e+00 1697.6 938 100.0
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 0.0e+00 1654.4 943 97.7
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 0.0e+00 1540.4 958 89.7
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 0.0e+00 1397.1 939 85.0
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 0.0e+00 1393.3 940 82.8
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 0.0e+00 1374.0 959 82.2
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 0.0e+00 1193.3 943 75.4
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 2.4e-277 959.1 948 61.5
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 1.4e-272 943.3 955 60.5
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 5.6e-266 921.4 909 60.3
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 1.5e-263 913.3 950 60.2
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 9.9e-255 884.0 980 58.1
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 2.2e-254 882.9 896 60.0
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 4.0e-248 862.1 956 57.2
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 4.8e-241 838.6 880 56.8
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 2.2e-238 829.7 954 56.2
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 3.2e-237 825.9 956 55.3
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 4.6e-236 822.0 955 55.8
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 1.3e-235 820.5 944 55.4
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 8.7e-235 817.8 838 59.3
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 3.3e-234 815.8 887 56.8
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.1e-232 810.8 865 57.5
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 4.1e-232 808.9 971 53.9
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 4.5e-231 805.4 946 54.9
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 1.7e-230 803.5 953 53.7
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 2.9e-230 802.7 909 54.7
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 6.5e-230 801.6 923 54.2
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.4e-229 800.4 921 55.2
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.7e-225 785.8 952 52.1
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 4.8e-225 785.4 947 54.4
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 6.3e-225 785.0 856 56.7
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-224 783.5 927 53.3
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.4e-221 773.9 946 53.7
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 1.9e-221 773.5 946 53.0
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.7e-220 768.8 921 53.3
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.9e-219 765.8 880 55.8
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.1e-218 764.2 879 55.4
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 1.5e-218 763.8 893 53.5
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 6.3e-217 758.4 965 51.0
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.3e-217 758.4 879 55.3
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 8.2e-217 758.1 953 52.8
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 7.0e-216 755.0 879 55.1
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.5e-213 747.3 854 55.9
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.5e-213 746.5 900 52.3
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 8.0e-212 741.5 902 51.9
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 8.0e-212 741.5 902 51.9
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 1.0e-211 741.1 890 51.8
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 2.3e-211 740.0 948 50.0
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 5.2e-211 738.8 893 53.3
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 2.8e-209 733.0 951 51.2
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-208 729.6 891 53.0
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 5.3e-208 728.8 962 51.1
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 9.1e-208 728.0 885 52.7
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.0e-207 726.9 928 50.0
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 2.7e-207 726.5 884 53.6
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 2.9e-206 723.0 894 52.3
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 5.0e-206 722.2 952 48.9
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 3.6e-204 716.1 880 52.6
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 4.7e-204 715.7 898 51.3
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 4.7e-204 715.7 891 51.3
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 2.3e-203 713.4 773 58.9
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 6.8e-203 711.8 809 54.5
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-202 709.9 924 49.6
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 7.5e-202 708.4 913 50.3
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 8.3e-201 704.9 954 48.3
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 1.2e-199 701.0 891 52.5
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.6e-199 700.7 896 52.1
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 3.5e-199 699.5 918 49.0
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 5.9e-199 698.7 1054 46.8
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 9.5e-197 691.4 1027 46.8
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 4.0e-195 686.0 876 50.0
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 3.4e-194 682.9 992 47.9
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 4.4e-194 682.6 883 51.3
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 2.8e-193 679.9 886 49.5
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 4.9e-193 679.1 959 47.4
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 1.8e-192 677.2 901 48.9
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 2.4e-192 676.8 806 53.6
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 1.1e-189 667.9 887 50.4
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 3.0e-187 659.8 916 48.6
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 3.7e-185 652.9 897 47.7
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 1.3e-182 644.4 918 48.5
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.3e-182 644.4 960 47.4
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 3.3e-181 639.8 843 50.3
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 8.3e-177 625.2 907 47.2
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 4.6e-175 619.4 902 46.3
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 2.3e-174 617.1 915 45.0
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 3.9e-174 616.3 893 47.1
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 5.6e-173 612.5 907 45.9
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 3.7e-169 599.7 899 45.2
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 6.4e-169 599.0 912 47.3
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 4.1e-168 596.3 950 44.7
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 5.4e-168 595.9 949 43.1
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 7.8e-167 592.0 917 45.5
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 3.3e-165 586.6 926 43.4
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 4.3e-165 586.3 903 45.3
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 4.3e-165 586.3 856 46.5
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 9.5e-165 585.1 953 44.5
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 1.2e-164 584.7 902 45.1
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 3.6e-164 583.2 902 45.0
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 6.2e-164 582.4 888 45.3
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 8.1e-164 582.0 500 65.6
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 1.1e-163 581.6 885 45.6
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 7.6e-162 575.5 794 50.1
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 9.9e-162 575.1 864 45.9
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 2.8e-156 557.0 911 43.5
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 3.1e-147 526.9 921 42.0
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 2.0e-146 524.2 888 42.9
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 7.6e-146 522.3 750 47.6
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 1.7e-145 521.2 928 43.4
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 5.4e-144 516.2 547 56.1
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 2.6e-138 497.3 852 41.9
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.3e-124 451.8 885 38.2
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 2.5e-117 427.6 853 38.1
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 1.7e-113 414.8 592 46.1
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 7.7e-106 389.4 903 35.8
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 1.3e-105 388.7 490 52.0
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 4.1e-99 367.1 609 44.0
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 1.8e-91 341.7 434 53.2
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-89 335.5 533 45.0
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 7.2e-88 329.7 241 68.5
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 1.2e-85 322.4 463 50.3
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 5.4e-83 313.5 396 51.8
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 2.3e-81 308.1 527 38.9
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.6e-66 258.8 412 45.9
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.7e-60 237.7 926 28.4
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 1.7e-57 228.8 214 66.4
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 8.6e-57 226.5 181 65.7
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 1.3e-52 212.6 201 55.7
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 4.6e-42 177.6 645 30.5
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 7.8e-42 176.8 1019 24.8
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 1.0e-41 176.4 153 60.8
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-40 172.6 155 64.5
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-38 165.6 317 43.8
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.9e-35 155.6 177 54.2
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 2.1e-34 152.1 206 49.0
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 2.5e-32 145.2 616 25.2
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 5.6e-32 144.1 239 38.5
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 4.0e-30 137.9 176 52.8
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.5e-29 134.4 166 49.4
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.4e-27 127.5 97 61.9
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 5.4e-27 127.5 97 61.9
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-26 125.6 174 51.1
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.0e-25 121.7 384 32.8
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.3e-23 116.3 267 38.6
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 1.7e-20 105.9 110 60.9
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-18 97.4 254 36.2
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 2.3e-17 95.5 254 35.4
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.0e-17 95.1 151 37.7
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 2.8e-15 88.6 120 45.8
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 5.3e-14 84.3 151 38.4
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 6.9e-14 84.0 177 35.6
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 6.9e-14 84.0 177 35.6
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.0e-14 83.6 192 35.4
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 9.0e-14 83.6 192 35.4
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 4.5e-13 81.3 87 58.6
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 4.5e-13 81.3 65 69.2
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 1.3e-12 79.7 269 27.9
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.9e-09 68.2 41 85.4
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.5e-08 66.2 97 41.2
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 1.9e-08 65.9 42 73.8
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-07 62.8 59 62.7
unitig_11.g32402 Utricularia gibba HOM05D052051 ORTHO05D004559 1.6e-07 62.8 46 58.7
unitig_8.g3821 Utricularia gibba HOM05D052051 ORTHO05D004559 1.6e-07 62.8 46 58.7
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 2.8e-07 62.0 56 57.1
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 4.8e-07 61.2 90 44.4
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 4.8e-07 61.2 55 58.2
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 6.3e-07 60.8 42 71.4
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 6.3e-07 60.8 130 40.8
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 1.8e-06 59.3 53 56.6
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.1e-06 58.5 50 54.0
unitig_31.g34037 Utricularia gibba HOM05D004001 ORTHO05D004559 3.1e-06 58.5 98 44.9


User provided reference genes

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