Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 0.0e+00 1155.2 662 100.0
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 0.0e+00 1153.3 662 98.8
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 0.0e+00 1136.3 587 98.3
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 2.1e-307 1058.5 587 90.1
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.7e-304 1047.7 594 90.4
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 6.7e-298 1026.9 543 91.0
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.7e-270 935.3 538 89.6
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 2.0e-254 882.5 546 77.3
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 3.0e-250 868.6 556 76.6
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 3.0e-250 868.6 556 76.6
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 3.9e-245 851.7 549 73.8
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 6.6e-245 850.9 546 75.3
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 4.3e-244 848.2 526 77.2
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 4.7e-243 844.7 546 74.5
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 2.3e-242 842.4 522 78.5
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 3.5e-238 828.6 546 72.5
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 3.5e-238 828.6 548 73.0
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 6.0e-238 827.8 554 72.0
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.3e-237 826.6 554 72.0
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.3e-237 825.9 551 72.1
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.9e-237 825.1 547 72.6
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 3.9e-237 825.1 546 70.9
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 8.6e-237 823.9 546 73.1
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 8.6e-237 823.9 547 72.6
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 8.6e-237 823.9 546 73.4
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.1e-236 823.5 546 72.7
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.5e-236 822.4 551 73.5
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.6e-235 819.7 546 72.9
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 3.6e-235 818.5 556 70.5
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.7e-235 818.1 560 72.1
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 6.2e-235 817.8 548 71.5
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 8.1e-235 817.4 560 72.1
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.8e-234 816.2 548 71.4
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 1.8e-234 816.2 543 71.8
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 2.3e-234 815.8 547 72.0
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 3.1e-234 815.5 547 71.1
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.2e-233 813.5 548 71.7
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 2.6e-233 812.4 549 70.9
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 3.4e-233 812.0 547 72.6
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 3.4e-233 812.0 546 71.8
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 4.4e-233 811.6 546 71.6
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.4e-233 811.6 546 71.6
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.4e-233 811.6 546 71.6
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 9.9e-233 810.4 546 71.4
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 9.9e-233 810.4 547 70.9
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 2.2e-232 809.3 538 73.6
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.2e-232 809.3 546 71.4
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 3.7e-232 808.5 554 71.1
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 1.4e-231 806.6 550 70.2
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.4e-231 805.8 546 71.2
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.2e-231 805.4 545 70.5
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.2e-230 803.5 547 70.9
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 1.0e-229 800.4 548 70.6
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 6.6e-229 797.7 549 69.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 6.6e-229 797.7 555 69.7
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 6.6e-229 797.7 557 68.9
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.9e-228 796.2 547 70.6
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.5e-228 795.8 548 70.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 3.3e-228 795.4 547 71.5
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 1.6e-227 793.1 547 70.2
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 1.8e-226 789.6 548 70.3
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 1.8e-226 789.6 548 70.3
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.8e-226 789.6 561 69.7
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.8e-226 789.6 549 69.9
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 3.1e-226 788.9 556 69.6
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 4.0e-226 788.5 550 69.8
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.7e-224 783.1 548 69.9
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 8.4e-224 780.8 550 69.5
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 3.2e-223 778.9 547 69.5
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 5.4e-223 778.1 553 70.0
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 9.2e-223 777.3 551 69.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.3e-221 773.5 546 69.8
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 3.0e-221 772.3 545 68.6
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 6.6e-221 771.2 550 69.5
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.3e-220 768.8 536 69.4
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 9.6e-220 767.3 541 69.9
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 6.9e-218 761.1 536 69.8
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 4.9e-216 755.0 540 69.6
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 6.4e-216 754.6 558 68.1
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.4e-215 752.7 506 71.7
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.6e-214 750.0 552 68.1
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 6.0e-214 748.0 556 67.6
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 1.0e-213 747.3 562 66.0
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 3.0e-213 745.7 558 67.2
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 7.3e-212 741.1 550 68.0
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 9.6e-212 740.7 548 67.2
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 1.6e-211 740.0 571 65.7
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 4.8e-211 738.4 556 66.2
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 8.1e-211 737.6 563 65.7
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 3.1e-210 735.7 540 68.0
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 9.0e-210 734.2 569 64.7
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 3.4e-209 732.3 549 66.3
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 3.4e-209 732.3 550 66.0
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.9e-208 729.2 546 65.6
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 3.8e-208 728.8 536 67.7
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 8.4e-208 727.6 536 67.5
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 9.3e-207 724.2 539 67.3
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 9.3e-207 724.2 539 67.3
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 9.3e-207 724.2 539 67.3
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.8e-203 712.6 553 64.6
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 3.7e-203 712.2 550 64.5
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 5.3e-202 708.4 527 67.6
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 9.0e-202 707.6 549 66.3
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.5e-201 706.8 542 63.7
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 3.8e-200 702.2 541 66.4
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 3.2e-199 699.1 549 64.3
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 4.2e-199 698.7 512 68.6
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.6e-198 695.3 492 69.3
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.6e-195 686.8 535 68.0
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.4e-194 682.9 553 61.7
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.9e-192 675.2 552 63.8
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 7.4e-188 661.4 553 62.6
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 7.4e-188 661.4 553 62.6
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 7.4e-188 661.4 553 62.6
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 7.7e-185 651.4 540 63.5
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.9e-183 646.7 549 60.5
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 7.4e-180 634.8 537 62.4
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 8.2e-179 631.3 555 59.1
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 6.9e-178 628.2 576 57.8
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 2.0e-172 610.1 430 71.2
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.4e-170 604.0 570 57.0
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 4.2e-167 592.4 547 58.0
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 5.3e-162 575.5 593 53.0
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 2.8e-155 553.1 408 67.4
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 3.7e-155 552.7 453 63.1
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 9.8e-148 528.1 553 51.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 6.3e-147 525.4 314 78.7
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.4e-138 496.9 551 47.9
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.1e-127 461.5 336 66.4
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.6e-121 441.0 381 56.7
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.3e-120 438.0 391 55.2
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 5.8e-100 369.4 285 63.2
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 3.8e-83 313.5 347 51.3
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 3.7e-78 297.0 547 36.0
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 6.5e-67 259.6 392 41.1
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 2.2e-62 244.6 218 58.7
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 6.5e-59 233.0 176 63.6
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 5.0e-43 180.3 141 61.0
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 8.3e-38 162.9 164 53.0
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 8.0e-33 146.4 296 31.4
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 5.6e-26 123.6 77 77.9
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 3.4e-23 114.4 101 59.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-18 99.0 96 54.2
AagrBONN_evm.TU.Sc2ySwM_344.1101 Anthoceros agrestis HOM05D004961 ORTHO05D006258 5.6e-18 97.1 163 35.0
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.1e-17 95.1 80 57.5
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 2.3e-11 75.1 59 59.3
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 3.1e-08 64.7 57 61.4
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 4.4e-07 60.8 33 81.8


User provided reference genes

Program Settings