Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g091140.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 1.6e-241 839.0 403 100.0
PGSC0003DMG400025962 Solanum tuberosum HOM05D006696 ORTHO05D008683 4.5e-180 634.8 524 65.3
Solyc01g091130.4 Solanum lycopersicum HOM05D006696 ORTHO05D008683 4.4e-175 618.2 525 63.4
Sopen01g036880 Solanum pennellii HOM05D006696 ORTHO05D008683 1.3e-174 616.7 524 63.4
CAN.G388.34 Capsicum annuum HOM05D006696 ORTHO05D008683 1.2e-167 593.6 531 61.6
Nitab4.5_0000457g0140 Nicotiana tabacum HOM05D006696 ORTHO05D008683 4.7e-161 571.6 560 58.4
Nitab4.5_0010616g0010 Nicotiana tabacum HOM05D006696 ORTHO05D008683 8.8e-160 567.4 571 56.9
Peaxi162Scf00013g03019 Petunia axillaris HOM05D006696 ORTHO05D008683 8.3e-158 560.8 528 58.3
Hma1.2p1_0301F.1_g118560 Hydrangea macrophylla HOM05D006696 ORTHO05D008683 4.3e-146 521.9 521 53.9
Gorai.013G134800 Gossypium raimondii HOM05D006696 ORTHO05D008683 1.8e-144 516.5 517 53.8
Gohir.D13G120600 Gossypium hirsutum HOM05D006696 ORTHO05D008683 2.3e-144 516.2 517 53.8
CSS0014714 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 3.1e-144 515.8 516 54.7
Gohir.A13G117300 Gossypium hirsutum HOM05D006696 ORTHO05D008683 7.5e-143 511.1 517 53.0
CSS0026641 Camellia sinensis var. sinensis HOM05D006696 ORTHO05D008683 9.8e-143 510.8 516 53.9
HanXRQChr03g0093971 Helianthus annuus HOM05D006696 ORTHO05D008683 1.7e-142 510.0 518 53.1
Cc02_g24120 Coffea canephora HOM05D006696 ORTHO05D008683 8.3e-142 507.7 514 52.9
Thecc.08G173400 Theobroma cacao HOM05D006696 ORTHO05D008683 1.9e-141 506.5 528 52.1
Lj7C531T6 Lonicera japonica HOM05D006696 ORTHO05D008683 3.5e-140 502.3 524 52.1
Manes.01G267400 Manihot esculenta HOM05D006696 ORTHO05D008683 2.3e-139 499.6 518 51.5
ClCG05G002380 Citrullus lanatus HOM05D006696 ORTHO05D008683 3.9e-139 498.8 516 53.5
Duzib177G0277 Durio zibethinus HOM05D006696 ORTHO05D008683 5.0e-139 498.4 480 55.0
Lsat_1_v5_gn_3_132380 Lactuca sativa HOM05D006696 ORTHO05D008683 3.3e-138 495.7 524 52.1
TWI14G1225 Tripterygium wilfordii HOM05D006696 ORTHO05D008683 5.6e-138 495.0 516 51.9
Rhsim01G0149400 Rhododendron simsii HOM05D006696 ORTHO05D008683 7.3e-138 494.6 518 52.3
COL.COLO4_24599 Corchorus olitorius HOM05D006696 ORTHO05D008683 2.1e-137 493.0 521 51.8
AUR62013656 Chenopodium quinoa HOM05D006696 ORTHO05D008683 4.7e-137 491.9 453 57.2
Sed0011228 Sechium edule HOM05D006696 ORTHO05D008683 3.1e-136 489.2 517 50.1
MD07G1119000 Malus domestica HOM05D006696 ORTHO05D008683 6.8e-136 488.0 516 51.4
Prupe.2G142200 Prunus persica HOM05D006696 ORTHO05D008683 6.8e-136 488.0 518 52.1
CiPaw.01G264000 Carya illinoinensis HOM05D006696 ORTHO05D008683 1.5e-135 486.9 523 51.2
CsaV3_3G009820 Cucumis sativus L. HOM05D006696 ORTHO05D008683 1.5e-135 486.9 529 50.7
AUR62004189 Chenopodium quinoa HOM05D006696 ORTHO05D008683 2.0e-135 486.5 520 51.0
TAR629G0060 Trochodendron aralioides HOM05D006696 ORTHO05D008683 2.0e-135 486.5 521 51.2
Potri.002G146100 Populus trichocarpa HOM05D006696 ORTHO05D008683 3.4e-135 485.7 518 50.4
GSVIVG01027661001 Vitis vinifera HOM05D006696 ORTHO05D008683 3.4e-135 485.7 471 55.4
Ciclev10019231m.g Citrus clementina HOM05D006696 ORTHO05D008683 7.5e-135 484.6 519 50.7
Nn6g34076 Nelumbo nucifera HOM05D006696 ORTHO05D008683 9.8e-135 484.2 516 51.0
Eucgr.D02468 Eucalyptus grandis HOM05D006696 ORTHO05D008683 2.9e-134 482.6 512 50.0
RcHm_v2.0_Chr1g0349711 Rosa chinensis HOM05D006696 ORTHO05D008683 3.7e-134 482.3 527 50.7
THA.LOC104814083 Tarenaya hassleriana HOM05D006696 ORTHO05D008683 4.9e-134 481.9 518 50.6
EL10Ac1g00866 Beta vulgaris HOM05D006696 ORTHO05D008683 8.3e-134 481.1 514 51.2
Haze_16792 Corylus avellana HOM05D006696 ORTHO05D008683 1.4e-133 480.3 516 51.2
Medtr4g025130 Medicago truncatula HOM05D006696 ORTHO05D008683 2.4e-133 479.6 523 50.9
MELO3C006203.2 Cucumis melo HOM05D006696 ORTHO05D008683 3.2e-133 479.2 525 50.3
vmacro21023 Vaccinium macrocarpon HOM05D006696 ORTHO05D008683 3.2e-133 479.2 600 46.2
Sabra02G0113800 Salix brachista HOM05D006696 ORTHO05D008683 5.4e-133 478.4 518 49.4
Lalb_Chr07g0189961 Lupinus albus HOM05D006696 ORTHO05D008683 7.1e-133 478.0 521 50.5
Atru.chr5.281 Acer truncatum HOM05D006696 ORTHO05D008683 2.7e-132 476.1 519 49.5
Ca_19926_v3 Cicer arietinum L. HOM05D006696 ORTHO05D008683 4.6e-132 475.3 535 49.7
Aa31LG1G11340 Aethionema arabicum HOM05D006696 ORTHO05D008683 7.8e-132 474.6 519 50.7
QL08p052869 Quercus lobata HOM05D006696 ORTHO05D008683 1.0e-131 474.2 521 50.5
VMungo0331G0021 Vigna mungo HOM05D006696 ORTHO05D008683 2.3e-131 473.0 520 49.0
Psat7g231000 Pisum sativum HOM05D006696 ORTHO05D008683 3.0e-131 472.6 545 49.5
Glyma.03G028100 Glycine max HOM05D006696 ORTHO05D008683 3.9e-131 472.2 516 50.2
Migut.B01614 Erythranthe guttata HOM05D006696 ORTHO05D008683 6.6e-131 471.5 524 49.8
Phvul.010G081400 Phaseolus vulgaris HOM05D006696 ORTHO05D008683 3.3e-130 469.2 529 48.6
TPR.G7586 Trifolium pratense HOM05D006696 ORTHO05D008683 1.2e-129 467.2 548 48.7
Ah.05g174590 Amaranthus hybridus HOM05D006696 ORTHO05D008683 1.1e-128 464.2 515 48.7
ECA232G1408 Erigeron canadensis HOM05D006696 ORTHO05D008683 1.4e-128 463.8 543 47.9
Aqoxy7G00691 Aquilegia oxysepala HOM05D006696 ORTHO05D008683 5.2e-128 461.8 514 48.6
Sp1g37340 Schrenkiella parvula HOM05D006696 ORTHO05D008683 5.2e-128 461.8 521 50.3
Hund27369 Selenicereus undatus HOM05D006696 ORTHO05D008683 1.2e-127 460.7 528 49.1
SGA_v2.0_scaffold95G28911 Striga asiatica HOM05D006696 ORTHO05D008683 1.2e-127 460.7 530 49.2
MSTRG.20736 Avicennia marina HOM05D006696 ORTHO05D008683 3.4e-127 459.1 523 47.4
FAN06G3694 Fragaria x ananassa HOM05D006696 ORTHO05D008683 3.4e-127 459.1 518 48.5
MBI12_g20403_MAGBIO Magnolia biondii HOM05D006696 ORTHO05D008683 3.4e-127 459.1 526 48.9
FvH4_7g11430 Fragaria vesca HOM05D006696 ORTHO05D008683 9.9e-127 457.6 518 48.8
FAN01G1519 Fragaria x ananassa HOM05D006696 ORTHO05D008683 9.9e-127 457.6 518 48.3
FAN06G1977 Fragaria x ananassa HOM05D006696 ORTHO05D008683 2.2e-126 456.4 518 48.5
unitig_22.g5383 Utricularia gibba HOM05D006696 ORTHO05D008683 1.4e-125 453.8 516 47.7
arahy.Tifrunner.gnm1.ann1.30BUB6 Arachis hypogaea HOM05D006696 ORTHO05D008683 1.9e-125 453.4 517 48.5
arahy.Tifrunner.gnm1.ann1.PBYD8I Arachis hypogaea HOM05D006696 ORTHO05D008683 4.1e-125 452.2 517 48.2
Thhalv10007140m.g Eutrema salsugineum HOM05D006696 ORTHO05D008683 1.2e-124 450.7 512 49.4
C06p05680 Brassica napus HOM05D006696 ORTHO05D008683 6.0e-124 448.4 511 49.9
AL1G10260 Arabidopsis lyrata HOM05D006696 ORTHO05D008683 1.0e-123 447.6 516 49.0
BcaB07g33486 Brassica carinata HOM05D006696 ORTHO05D008683 1.7e-123 446.8 513 49.7
Cpa.g.sc611.2 Carica papaya HOM05D006696 ORTHO05D008683 2.3e-123 446.4 463 50.3
AT1G02020 Arabidopsis thaliana HOM05D006696 ORTHO05D008683 8.6e-123 444.5 514 48.6
BcaC08g43220 Brassica carinata HOM05D006696 ORTHO05D008683 1.1e-122 444.1 510 49.2
BolC6t35679H Brassica oleracea HOM05D006696 ORTHO05D008683 1.1e-122 444.1 510 49.2
A06p03080 Brassica napus HOM05D006696 ORTHO05D008683 5.6e-122 441.8 508 49.0
BraA06t23521Z Brassica rapa HOM05D006696 ORTHO05D008683 7.3e-122 441.4 507 49.3
CDE04G1815 Ceratophyllum demersum HOM05D006696 ORTHO05D008683 1.6e-121 440.3 513 48.0
Carub.0001s0021 Capsella rubella HOM05D006696 ORTHO05D008683 2.8e-121 439.5 509 47.7
Lj3g0014279 Lotus japonicus HOM05D006696 ORTHO05D008683 1.1e-120 437.6 462 50.6
FAN03G1153 Fragaria x ananassa HOM05D006696 ORTHO05D008683 1.8e-120 436.8 518 47.3
PSO478G1798 Papaver somniferum HOM05D006696 ORTHO05D008683 4.2e-117 425.6 515 46.8
PSO782G1103 Papaver somniferum HOM05D006696 ORTHO05D008683 5.4e-117 425.2 515 46.6
Sc26g0001290 Simmondsia chinensis HOM05D006696 ORTHO05D008683 6.6e-115 418.3 458 50.4
SalBow5G3816 Salvia bowleyana HOM05D006696 ORTHO05D008683 1.5e-111 407.1 460 48.0
HPP92_022287 Vanilla planifolia HOM05D006696 ORTHO05D008683 1.1e-109 401.0 546 43.0
Actinidia33475 Actinidia chinensis HOM05D006696 ORTHO05D008683 1.4e-101 374.0 368 54.6
ATR0041G020 Amborella trichopoda HOM05D006696 ORTHO05D008683 2.1e-100 370.2 516 42.1
DCAR_015916 Daucus carota HOM05D006696 ORTHO05D008683 4.3e-98 362.5 332 56.0
SEGI_31859 Sequoiadendron giganteum HOM05D006696 ORTHO05D008683 1.6e-92 344.0 473 40.6
Os10g0190800 Oryza sativa ssp. japonica HOM05D006696 ORTHO05D008683 2.1e-92 343.6 522 39.5
SMO011G0006 Selaginella moellendorffii HOM05D006696 ORTHO05D008683 5.1e-91 339.0 515 39.6
Zm00001eb145800 Zea mays HOM05D006696 ORTHO05D008683 1.5e-90 337.4 501 40.1
CARHR000330 Cardamine hirsuta HOM05D006696 ORTHO05D008683 5.9e-87 325.5 406 46.6
Mapoly0117s0009 Marchantia polymorpha HOM05D006696 ORTHO05D008683 9.3e-85 318.2 513 38.2
Dinv32364 Davidia involucrata HOM05D006696 ORTHO05D008683 9.1e-80 301.6 255 60.8
Pp3c18_8320 Physcomitrium patens HOM05D006696 ORTHO05D008683 2.6e-79 300.1 513 36.3
AagrBONN_evm.TU.Sc2ySwM_228.1723 Anthoceros agrestis HOM05D006696 ORTHO05D008683 5.9e-79 298.9 506 37.0
CANSAT21G0759 Cannabis sativa HOM05D006696 ORTHO05D008683 9.7e-66 255.0 195 63.1
Sopen01g036900 Solanum pennellii HOM05D006696 ORTHO05D008683 3.1e-48 196.8 102 93.1
Oeu037929.1 Olea europaea HOM05D006696 ORTHO05D008683 2.5e-37 160.6 114 70.2
CARHR000320 Cardamine hirsuta HOM05D006696 ORTHO05D008683 9.2e-32 142.1 107 63.6
SGA_v2.0_scaffold581G53050 Striga asiatica HOM05D006696 ORTHO05D008683 1.7e-22 111.3 84 59.5
Atru.chr4.660 Acer truncatum HOM05D006696 ORTHO05D030753 9.2e-16 89.0 66 57.6
Sopen01g036890 Solanum pennellii HOM05D006696 ORTHO05D008683 1.2e-15 88.6 43 95.3
SalBow5G1567 Salvia bowleyana HOM05D006696 ORTHO05D008683 1.7e-14 84.7 43 90.7
VMungo1309G0520 Vigna mungo HOM05D006696 ORTHO05D008683 1.6e-12 78.2 63 55.6
VMungo0720G2385 Vigna mungo HOM05D006696 ORTHO05D008683 2.1e-12 77.8 64 54.7


User provided reference genes

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