Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g091090.4 Solanum lycopersicum HOM05D004478 ORTHO05D007440 2.4e-298 1028.1 529 100.0
Sopen01g036830 Solanum pennellii HOM05D004478 ORTHO05D007440 1.0e-264 916.4 476 98.5
CAN.G911.6 Capsicum annuum HOM05D004478 ORTHO05D007440 7.3e-247 857.1 476 91.8
Nitab4.5_0010730g0030 Nicotiana tabacum HOM05D004478 ORTHO05D007440 1.3e-227 793.1 468 86.3
Peaxi162Scf00013g02924 Petunia axillaris HOM05D004478 ORTHO05D007440 6.3e-222 774.2 501 79.6
Nitab4.5_0000252g0220 Nicotiana tabacum HOM05D004478 ORTHO05D007440 3.3e-207 725.3 480 78.5
Nitab4.5_0000457g0060 Nicotiana tabacum HOM05D004478 ORTHO05D007440 9.1e-197 690.6 398 86.4
TAR629G2829 Trochodendron aralioides HOM05D004478 ORTHO05D007440 8.0e-193 677.6 487 72.1
MSTRG.4901 Avicennia marina HOM05D004478 ORTHO05D007440 1.2e-191 673.7 487 71.7
CSS0018497 Camellia sinensis var. sinensis HOM05D004478 ORTHO05D007440 2.6e-191 672.5 486 72.0
SalBow5G5434 Salvia bowleyana HOM05D004478 ORTHO05D007440 1.7e-190 669.8 483 70.4
GSVIVG01027657001 Vitis vinifera HOM05D004478 ORTHO05D007440 1.7e-190 669.8 476 74.6
Nn6g34058 Nelumbo nucifera HOM05D004478 ORTHO05D007440 2.8e-190 669.1 465 73.5
Gohir.A04G045800 Gossypium hirsutum HOM05D004478 ORTHO05D007440 4.8e-190 668.3 487 71.7
Gohir.D05G336900 Gossypium hirsutum HOM05D004478 ORTHO05D007440 1.1e-189 667.2 487 71.5
MD07G1008800 Malus domestica HOM05D004478 ORTHO05D007440 1.4e-189 666.8 488 70.1
TWI14G0506 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 9.1e-189 664.1 472 73.1
Prupe.2G141700 Prunus persica HOM05D004478 ORTHO05D007440 1.2e-188 663.7 485 70.1
Gorai.009G361000 Gossypium raimondii HOM05D004478 ORTHO05D007440 1.6e-188 663.3 487 70.8
Duzib213G0292 Durio zibethinus HOM05D004478 ORTHO05D007440 2.0e-188 662.9 487 71.3
Lsat_1_v5_gn_7_9321 Lactuca sativa HOM05D004478 ORTHO05D007440 1.0e-187 660.6 492 68.5
MD02G1313300 Malus domestica HOM05D004478 ORTHO05D007440 1.0e-187 660.6 488 69.1
HanXRQChr04g0122511 Helianthus annuus HOM05D004478 ORTHO05D007440 1.3e-187 660.2 492 68.5
Thecc.01G379300 Theobroma cacao HOM05D004478 ORTHO05D007440 5.0e-187 658.3 467 73.4
Cfa011194 Carpinus fangiana HOM05D004478 ORTHO05D007440 6.5e-187 657.9 465 73.8
AUR62004186 Chenopodium quinoa HOM05D004478 ORTHO05D007440 6.5e-187 657.9 471 71.5
DCAR_015895 Daucus carota HOM05D004478 ORTHO05D007440 6.5e-187 657.9 464 72.2
FAN06G3638 Fragaria x ananassa HOM05D004478 ORTHO05D007440 1.5e-186 656.8 479 70.8
PGR042G4004 Punica granatum HOM05D004478 ORTHO05D007440 1.5e-186 656.8 482 69.3
EL10Ac1g00864 Beta vulgaris HOM05D004478 ORTHO05D007440 5.5e-186 654.8 492 69.1
CiPaw.14G027200 Carya illinoinensis HOM05D004478 ORTHO05D007440 5.5e-186 654.8 486 70.2
AUR62013659 Chenopodium quinoa HOM05D004478 ORTHO05D007440 7.2e-186 654.4 471 71.3
RcHm_v2.0_Chr1g0342581 Rosa chinensis HOM05D004478 ORTHO05D007440 7.2e-186 654.4 465 72.0
FvH4_7g07690 Fragaria vesca HOM05D004478 ORTHO05D007440 1.2e-185 653.7 480 70.4
Cc02_g24170 Coffea canephora HOM05D004478 ORTHO05D007440 2.7e-185 652.5 464 71.3
TWI59G0724 Tripterygium wilfordii HOM05D004478 ORTHO05D007440 4.7e-185 651.7 475 72.0
Lalb_Chr02g0146291 Lupinus albus HOM05D004478 ORTHO05D007440 6.1e-185 651.4 479 70.4
FAN03G2702 Fragaria x ananassa HOM05D004478 ORTHO05D007440 1.8e-184 649.8 479 69.5
Rhsim07G0029300 Rhododendron simsii HOM05D004478 ORTHO05D007440 6.8e-184 647.9 506 68.0
MELO3C022488.2 Cucumis melo HOM05D004478 ORTHO05D007440 1.2e-183 647.1 470 69.1
Manes.05G047400 Manihot esculenta HOM05D004478 ORTHO05D007440 1.5e-183 646.7 478 70.1
FAN10G0184 Fragaria x ananassa HOM05D004478 ORTHO05D007440 3.4e-183 645.6 479 69.9
Ciclev10018542m.g Citrus clementina HOM05D004478 ORTHO05D007440 7.5e-183 644.4 466 70.4
CsaV3_6G006310 Cucumis sativus L. HOM05D004478 ORTHO05D007440 1.3e-182 643.7 481 67.8
arahy.Tifrunner.gnm1.ann1.MXE7NW Arachis hypogaea HOM05D004478 ORTHO05D007440 2.2e-182 642.9 470 69.8
MBI04_g11448_MAGBIO Magnolia biondii HOM05D004478 ORTHO05D007440 3.7e-182 642.1 481 69.2
Potri.014G067400 Populus trichocarpa HOM05D004478 ORTHO05D007440 4.8e-182 641.7 472 69.3
THA.LOC104827612 Tarenaya hassleriana HOM05D004478 ORTHO05D007440 8.3e-182 641.0 467 70.2
Oeu064473.1 Olea europaea HOM05D004478 ORTHO05D007440 1.4e-181 640.2 473 70.8
Sp5g02510 Schrenkiella parvula HOM05D004478 ORTHO05D007440 2.4e-181 639.4 470 70.4
Aqoxy7G00707 Aquilegia oxysepala HOM05D004478 ORTHO05D007440 3.1e-181 639.0 485 68.5
arahy.Tifrunner.gnm1.ann1.R3KQ80 Arachis hypogaea HOM05D004478 ORTHO05D007440 1.2e-180 637.1 479 68.5
Aa31LG10G14990 Aethionema arabicum HOM05D004478 ORTHO05D007440 1.6e-180 636.7 472 70.1
PSO782G0861 Papaver somniferum HOM05D004478 ORTHO05D007440 1.6e-180 636.7 494 67.6
Thhalv10005754m.g Eutrema salsugineum HOM05D004478 ORTHO05D007440 2.0e-180 636.3 486 68.7
Actinidia12243 Actinidia chinensis HOM05D004478 ORTHO05D007440 2.7e-180 636.0 472 71.4
ECA236G4615 Erigeron canadensis HOM05D004478 ORTHO05D007440 2.7e-180 636.0 463 69.1
Sed0027727 Sechium edule HOM05D004478 ORTHO05D007440 5.9e-180 634.8 474 67.3
VMungo0720G2491 Vigna mungo HOM05D004478 ORTHO05D007440 3.8e-179 632.1 481 68.2
AT3G60740 Arabidopsis thaliana HOM05D004478 ORTHO05D007440 5.0e-179 631.7 490 67.8
Lj5g0020792 Lotus japonicus HOM05D004478 ORTHO05D007440 6.5e-179 631.3 485 67.8
TPR.G2420 Trifolium pratense HOM05D004478 ORTHO05D007440 6.5e-179 631.3 481 68.2
Glyma.20G110600 Glycine max HOM05D004478 ORTHO05D007440 8.6e-179 630.9 481 68.0
Phvul.007G022200 Phaseolus vulgaris HOM05D004478 ORTHO05D007440 4.2e-178 628.6 481 68.2
CARHR171130 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.2e-177 627.1 493 67.5
Glyma.10G279100 Glycine max HOM05D004478 ORTHO05D007440 1.2e-177 627.1 473 68.1
C04p31950 Brassica napus HOM05D004478 ORTHO05D007440 4.7e-177 625.2 470 69.4
BolC4t24748H Brassica oleracea HOM05D004478 ORTHO05D007440 4.7e-177 625.2 470 69.4
AL5G43050 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 6.1e-177 624.8 493 67.3
BcaC02g10175 Brassica carinata HOM05D004478 ORTHO05D007440 1.0e-176 624.0 470 69.4
Hund27372 Selenicereus undatus HOM05D004478 ORTHO05D007440 1.0e-176 624.0 467 68.7
arahy.Tifrunner.gnm1.ann1.W3JVU2 Arachis hypogaea HOM05D004478 ORTHO05D007440 1.8e-176 623.2 468 68.2
Carub.0005s2747 Capsella rubella HOM05D004478 ORTHO05D007440 1.8e-176 623.2 493 66.9
Ah.05g174780 Amaranthus hybridus HOM05D004478 ORTHO05D007440 5.2e-176 621.7 493 64.7
Sabra14G0047400 Salix brachista HOM05D004478 ORTHO05D007440 4.9e-174 615.1 533 61.2
arahy.Tifrunner.gnm1.ann1.ZTQI5E Arachis hypogaea HOM05D004478 ORTHO05D007440 8.3e-174 614.4 468 67.3
A04p01470 Brassica napus HOM05D004478 ORTHO05D007440 3.1e-173 612.5 468 68.6
Carub.0002s1115 Capsella rubella HOM05D004478 ORTHO05D007440 1.6e-172 610.1 472 67.2
BraA04t15865Z Brassica rapa HOM05D004478 ORTHO05D007440 7.8e-172 607.8 494 66.0
Actinidia12201 Actinidia chinensis HOM05D004478 ORTHO05D007440 6.6e-171 604.7 467 67.7
vmacro13419 Vaccinium macrocarpon HOM05D004478 ORTHO05D007440 1.5e-170 603.6 531 62.1
Medtr1g112130 Medicago truncatula HOM05D004478 ORTHO05D007440 1.5e-167 593.6 468 65.8
Psat6g230960 Pisum sativum HOM05D004478 ORTHO05D007440 9.8e-167 590.9 467 64.0
ATR0829G158 Amborella trichopoda HOM05D004478 ORTHO05D007440 1.1e-165 587.4 468 64.7
COL.COLO4_12522 Corchorus olitorius HOM05D004478 ORTHO05D007440 7.3e-162 574.7 488 64.8
SGA_v2.0_scaffold43G16502 Striga asiatica HOM05D004478 ORTHO05D007440 8.0e-161 571.2 505 62.2
Duzib213G0739 Durio zibethinus HOM05D004478 ORTHO05D007440 8.9e-160 567.8 486 64.0
SHI13530 Sapria himalayana HOM05D004478 ORTHO05D007440 1.2e-159 567.4 476 62.4
Ca_25666_v3 Cicer arietinum L. HOM05D004478 ORTHO05D007440 1.7e-158 563.5 540 58.3
Cpa.g.sc145.17 Carica papaya HOM05D004478 ORTHO05D007440 4.1e-157 558.9 499 62.3
HPP92_014468 Vanilla planifolia HOM05D004478 ORTHO05D007440 7.8e-156 554.7 469 62.9
CDE12G0470 Ceratophyllum demersum HOM05D004478 ORTHO05D007440 2.5e-154 549.7 469 61.6
AL2G22100 Arabidopsis lyrata HOM05D004478 ORTHO05D007440 2.9e-150 536.2 419 66.3
Sc02g0002670 Simmondsia chinensis HOM05D004478 ORTHO05D007440 1.4e-149 533.9 398 69.6
Eucgr.E01450 Eucalyptus grandis HOM05D004478 ORTHO05D007440 6.6e-147 525.0 393 68.7
ClCG06G000530 Citrullus lanatus HOM05D004478 ORTHO05D007440 4.3e-146 522.3 482 58.3
unitig_32.g11469 Utricularia gibba HOM05D004478 ORTHO05D007440 2.1e-137 493.4 470 57.0
Migut.N01621 Erythranthe guttata HOM05D004478 ORTHO05D007440 1.4e-136 490.7 381 66.4
Dinv43687 Davidia involucrata HOM05D004478 ORTHO05D007440 8.1e-129 464.9 316 75.0
Atru.chr5.277 Acer truncatum HOM05D004478 ORTHO05D007440 1.6e-116 424.1 418 56.9
Mapoly0039s0061 Marchantia polymorpha HOM05D004478 ORTHO05D007440 6.0e-116 422.2 473 49.3
SMO147G0207 Selaginella moellendorffii HOM05D004478 ORTHO05D007440 5.1e-115 419.1 478 48.1
Haze_02652 Corylus avellana HOM05D004478 ORTHO05D007440 1.1e-112 411.4 276 74.3
Pp3c2_18070 Physcomitrium patens HOM05D004478 ORTHO05D007440 7.2e-101 372.1 417 48.7
Lj9C568T10 Lonicera japonica HOM05D004478 ORTHO05D018907 9.1e-96 355.1 245 75.5
QL04p040032 Quercus lobata HOM05D004478 ORTHO05D007440 2.9e-94 350.1 248 73.8
QL04p040018 Quercus lobata HOM05D004478 ORTHO05D007440 1.4e-83 314.7 233 67.8
AagrBONN_evm.TU.Sc2ySwM_344.164 Anthoceros agrestis HOM05D004478 ORTHO05D007440 3.8e-78 296.6 433 42.5
MCO09G490 Micromonas commoda HOM05D004478 ORTHO05D007440 5.0e-78 296.2 445 39.6
CAN.G433.9 Capsicum annuum HOM05D004478 ORTHO05D007440 3.0e-75 287.0 223 67.3
CBR_g24365 Chara braunii HOM05D004478 ORTHO05D007440 1.2e-74 285.0 530 35.7
SEGI_29392 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 1.2e-74 285.0 254 57.9
MD07G1009100 Malus domestica HOM05D004478 ORTHO05D007440 6.3e-73 279.3 200 69.5
Cre12.g490250 Chlamydomonas reinhardtii HOM05D004478 ORTHO05D007440 4.7e-68 263.1 473 38.1
PRCOL_00002890 Prasinoderma coloniale HOM05D004478 ORTHO05D007440 4.1e-64 250.0 457 36.1
Lj9C568G3 Lonicera japonica HOM05D004478 ORTHO05D007440 2.2e-57 227.6 238 56.3
AUR62044221 Chenopodium quinoa HOM05D004478 ORTHO05D007440 7.0e-56 222.6 315 45.4
Zm00001eb220640 Zea mays HOM05D004478 ORTHO05D007440 1.5e-53 214.9 181 60.8
PGSC0003DMG400025966 Solanum tuberosum HOM05D004478 ORTHO05D007440 3.3e-45 187.2 97 97.9
SEGI_05829 Sequoiadendron giganteum HOM05D004478 ORTHO05D007440 3.3e-37 160.6 143 59.4
CARHR186390 Cardamine hirsuta HOM05D004478 ORTHO05D018907 4.3e-37 160.2 114 72.8
Dinv43688 Davidia involucrata HOM05D004478 ORTHO05D018907 2.6e-34 151.0 109 74.3
CARHR186400 Cardamine hirsuta HOM05D004478 ORTHO05D007440 1.8e-27 128.3 120 57.5
SEGI_22928 Sequoiadendron giganteum HOM05D004478 ORTHO05D050903 2.4e-16 91.3 93 50.5
Haze_02651 Corylus avellana HOM05D004478 ORTHO05D018907 3.9e-14 84.0 61 75.4
Cfa025481 Carpinus fangiana HOM05D004478 ORTHO05D121864 1.5e-10 72.0 445 22.7
Potri.002G145750 Populus trichocarpa HOM05D004478 ORTHO05D018907 1.5e-10 72.0 47 72.3
SMO174G0054 Selaginella moellendorffii HOM05D004478 ORTHO05D050903 5.8e-10 70.1 236 25.4
AUR62044220 Chenopodium quinoa HOM05D004478 ORTHO05D018907 7.6e-10 69.7 43 74.4
THA.LOC104810193 Tarenaya hassleriana HOM05D004478 ORTHO05D406888 1.1e-08 65.9 120 37.5
Cc05_g02990 Coffea canephora HOM05D004478 ORTHO05D018907 2.3e-06 58.2 58 53.4


User provided reference genes

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