Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 8.2e-94 347.1 175 100.0
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 6.9e-93 344.0 175 98.9
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 2.2e-86 322.4 175 93.1
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 6.3e-70 267.7 187 75.9
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 2.2e-67 259.2 187 74.3
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 5.0e-67 258.1 191 72.3
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 8.5e-59 230.7 183 66.1
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 5.5e-58 228.0 145 80.7
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 5.7e-55 218.0 193 62.7
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 1.6e-52 209.9 183 61.2
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 6.5e-51 204.5 186 61.3
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 3.6e-49 198.7 195 60.0
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 1.0e-48 197.2 174 58.6
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 2.3e-48 196.1 184 58.2
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 2.3e-43 179.5 183 53.0
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 5.0e-43 178.3 188 55.9
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 5.0e-43 178.3 184 51.6
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 8.6e-43 177.6 184 53.8
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 4.2e-42 175.3 189 55.0
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 9.5e-42 174.1 191 52.4
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 1.6e-41 173.3 116 69.8
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 3.6e-41 172.2 186 50.5
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 3.6e-41 172.2 189 49.7
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 1.8e-40 169.9 187 50.8
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 2.0e-39 166.4 175 52.6
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 4.4e-39 165.2 115 73.0
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 4.4e-39 165.2 166 54.2
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 5.7e-39 164.9 188 51.6
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 5.7e-39 164.9 189 51.3
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 7.5e-39 164.5 185 51.4
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 8.3e-38 161.0 202 46.0
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 2.4e-37 159.5 181 49.2
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 2.4e-37 159.5 186 47.8
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 1.2e-36 157.1 188 51.1
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 1.6e-36 156.8 110 70.0
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 2.0e-36 156.4 189 51.3
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 2.7e-36 156.0 184 48.9
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 4.6e-36 155.2 180 50.0
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 4.6e-36 155.2 174 53.4
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 5.9e-36 154.8 185 51.4
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 1.0e-35 154.1 109 68.8
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 1.3e-35 153.7 180 51.1
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 2.9e-35 152.5 179 48.6
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 5.0e-35 151.8 178 50.0
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 1.5e-34 150.2 179 50.8
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 1.9e-34 149.8 166 50.6
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 1.9e-34 149.8 167 50.9
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 3.3e-34 149.1 182 46.7
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 4.3e-34 148.7 187 44.9
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 5.6e-34 148.3 113 63.7
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 5.6e-34 148.3 179 49.7
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 7.3e-34 147.9 114 64.0
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 1.2e-33 147.1 170 54.1
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 1.2e-33 147.1 109 65.1
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 2.1e-33 146.4 176 49.4
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 8.0e-33 144.4 199 46.2
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 1.0e-32 144.1 115 60.9
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 1.4e-32 143.7 177 51.4
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 1.8e-32 143.3 176 48.3
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 5.2e-32 141.7 116 60.3
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 5.2e-32 141.7 189 44.4
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 8.9e-32 141.0 177 48.0
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 1.5e-31 140.2 108 63.0
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 4.4e-31 138.7 108 63.9
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 5.8e-31 138.3 180 49.4
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 9.8e-31 137.5 157 51.0
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 9.8e-31 137.5 180 48.9
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.3e-30 137.1 157 51.0
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.7e-30 136.7 157 51.0
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 6.4e-30 134.8 90 73.3
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 8.3e-30 134.4 121 59.5
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 1.1e-29 134.0 96 64.6
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 1.1e-29 134.0 110 60.9
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 1.4e-29 133.7 188 45.2
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 1.4e-29 133.7 107 62.6
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 4.1e-29 132.1 150 51.3
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 4.1e-29 132.1 180 46.7
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 5.4e-29 131.7 185 43.8
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 7.0e-29 131.3 106 62.3
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 1.2e-28 130.6 114 57.0
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 7.8e-28 127.9 184 44.0
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 7.8e-28 127.9 113 60.2
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 7.8e-28 127.9 113 60.2
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 7.8e-28 127.9 116 57.8
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 1.0e-27 127.5 110 60.0
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 1.3e-27 127.1 195 42.6
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 1.3e-27 127.1 110 60.0
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 2.3e-27 126.3 178 43.8
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 3.0e-27 125.9 184 42.9
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 3.0e-27 125.9 200 43.0
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 8.6e-27 124.4 195 44.6
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 8.6e-27 124.4 195 43.6
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 1.5e-26 123.6 191 42.9
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 1.9e-26 123.2 195 44.1
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 3.3e-26 122.5 196 43.9
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 7.3e-26 121.3 195 43.1
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 9.5e-26 120.9 195 43.6
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 9.5e-26 120.9 188 42.6
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 1.2e-25 120.6 194 43.8
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 2.1e-25 119.8 88 68.2
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 2.8e-25 119.4 186 41.9
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 8.1e-25 117.9 195 43.1
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 1.8e-24 116.7 188 42.0
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 2.3e-24 116.3 186 41.9
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 3.1e-24 115.9 193 42.5
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 8.9e-24 114.4 165 41.2
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 8.9e-24 114.4 100 58.0
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 1.2e-23 114.0 65 78.5
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 1.5e-23 113.6 110 50.9
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 9.8e-23 110.9 193 39.9
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 9.8e-23 110.9 101 53.5
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 3.7e-22 109.0 214 36.9
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 2.1e-20 103.2 206 36.9
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 7.8e-20 101.3 108 48.1
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 7.8e-20 101.3 90 51.1
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 1.7e-19 100.1 98 54.1
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 2.3e-19 99.8 164 37.8
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 3.0e-19 99.4 107 49.5
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 5.1e-19 98.6 95 46.3
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 1.1e-18 97.4 67 65.7
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 9.5e-18 94.4 172 37.2
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 9.5e-18 94.4 71 56.3
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 3.6e-17 92.4 159 37.7
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 3.6e-17 92.4 64 59.4
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 1.8e-16 90.1 69 58.0
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 4.0e-16 89.0 61 62.3
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 4.0e-16 89.0 61 62.3
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 2.6e-15 86.3 61 60.7
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 2.6e-15 86.3 61 60.7
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 2.6e-15 86.3 61 60.7
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 2.6e-15 86.3 61 60.7
SEGI_34718 Sequoiadendron giganteum HOM05D005957 ORTHO05D007318 3.1e-08 62.8 62 43.5


User provided reference genes

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