Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 2.2e-67 258.8 131 100.0
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 2.1e-49 199.1 109 91.7
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.7e-48 196.1 100 99.0
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.6e-38 162.9 100 81.0
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.2e-36 156.8 100 77.0
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 3.0e-24 115.5 76 72.4
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 1.3e-22 110.2 111 54.1
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 3.7e-22 108.6 106 52.8
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 1.4e-21 106.7 85 58.8
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 1.8e-21 106.3 95 57.9
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 1.8e-21 106.3 96 58.3
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 2.4e-21 105.9 91 56.0
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 5.3e-21 104.8 102 54.9
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 6.9e-21 104.4 83 66.3
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 1.2e-20 103.6 80 60.0
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 1.2e-20 103.6 100 55.0
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 2.6e-20 102.4 93 55.9
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 3.4e-20 102.1 99 51.5
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 5.8e-20 101.3 95 54.7
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 2.9e-19 99.0 92 52.2
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 4.9e-19 98.2 83 59.0
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 6.5e-19 97.8 78 62.8
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 1.1e-18 97.1 83 62.7
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 1.4e-18 96.7 88 53.4
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 1.4e-18 96.7 78 61.5
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 1.4e-18 96.7 67 67.2
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 1.4e-18 96.7 80 61.2
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 1.4e-18 96.7 83 57.8
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.9e-18 96.3 89 53.9
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.9e-18 96.3 88 52.3
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 2.5e-18 95.9 88 52.3
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 2.5e-18 95.9 98 48.0
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 2.5e-18 95.9 93 49.5
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 2.5e-18 95.9 74 63.5
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 3.2e-18 95.5 78 61.5
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 3.2e-18 95.5 80 60.0
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 4.2e-18 95.1 71 62.0
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 7.1e-18 94.4 88 52.3
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 7.1e-18 94.4 77 63.6
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 9.3e-18 94.0 79 62.0
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 9.3e-18 94.0 85 56.5
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 1.2e-17 93.6 89 52.8
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.2e-17 93.6 116 42.2
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 1.6e-17 93.2 84 60.7
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 2.1e-17 92.8 83 55.4
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 6.0e-17 91.3 76 61.8
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 7.9e-17 90.9 78 55.1
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 7.9e-17 90.9 74 59.5
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 7.9e-17 90.9 82 56.1
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.3e-16 90.1 99 52.5
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 1.8e-16 89.7 83 59.0
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 1.8e-16 89.7 99 52.5
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 1.8e-16 89.7 75 57.3
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 3.0e-16 89.0 90 52.2
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.1e-16 88.2 82 53.7
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 5.1e-16 88.2 82 53.7
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 6.7e-16 87.8 73 63.0
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.1e-15 87.0 82 53.7
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 1.5e-15 86.7 75 65.3
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 2.5e-15 85.9 73 60.3
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 4.3e-15 85.1 88 50.0
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 4.3e-15 85.1 88 50.0
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 4.3e-15 85.1 82 52.4
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.3e-15 85.1 140 40.7
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.3e-15 85.1 82 52.4
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 4.3e-15 85.1 82 52.4
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 9.6e-15 84.0 78 57.7
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 1.3e-14 83.6 71 56.3
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 1.3e-14 83.6 75 54.7
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 2.8e-14 82.4 74 54.1
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 8.2e-14 80.9 114 40.4
CDE02G3860 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 1.4e-13 80.1 77 57.1
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.4e-13 79.3 80 48.8
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 3.1e-13 79.0 59 67.8
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 3.1e-13 79.0 93 46.2
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 4.1e-13 78.6 90 46.7
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 4.1e-13 78.6 59 67.8
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 6.9e-13 77.8 58 60.3
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 6.9e-13 77.8 79 49.4
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 9.0e-13 77.4 79 53.2
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 1.2e-12 77.0 56 69.6
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 1.5e-12 76.6 80 48.8
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.0e-12 76.3 79 53.2
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 2.0e-12 76.3 79 53.2
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 2.0e-12 76.3 92 46.7
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.6e-12 75.9 77 50.6
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 2.6e-12 75.9 101 44.6
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 3.4e-12 75.5 74 55.4
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 4.5e-12 75.1 62 54.8
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 5.9e-12 74.7 76 53.9
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 5.9e-12 74.7 63 58.7
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 1.0e-11 73.9 95 46.3
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 1.0e-11 73.9 76 48.7
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 2.2e-11 72.8 81 49.4
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 2.9e-11 72.4 80 43.8
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 2.9e-11 72.4 79 50.6
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 2.9e-11 72.4 64 56.2
ATR0057G003 Amborella trichopoda HOM05D006948 ORTHO05D008703 6.5e-11 71.2 78 53.8
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 8.4e-11 70.9 64 53.1
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 8.4e-11 70.9 64 53.1
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 1.4e-10 70.1 81 46.9
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 1.4e-10 70.1 74 50.0
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.5e-10 69.3 59 62.7
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 9.3e-10 67.4 71 47.9
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 2.7e-09 65.9 67 52.2
Thecc.01G390600 Theobroma cacao HOM05D006948 ORTHO05D008703 2.3e-08 62.8 48 68.8
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 2.3e-08 62.8 55 58.2
HPP92_014505 Vanilla planifolia HOM05D006948 ORTHO05D008703 2.3e-08 62.8 58 56.9
MD07G1101200 Malus domestica HOM05D006948 ORTHO05D008703 1.1e-07 60.5 74 43.2
SEGI_25204 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 4.8e-06 55.1 75 48.0
SEGI_39218 Sequoiadendron giganteum HOM05D006948 ORTHO05D008703 4.8e-06 55.1 75 48.0


User provided reference genes

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