Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090470.3 Solanum lycopersicum HOM05D001638 ORTHO05D005197 1.4e-187 659.8 418 100.0
Sopen01g036260 Solanum pennellii HOM05D001638 ORTHO05D005197 4.4e-186 654.8 418 99.3
PGSC0003DMG400026041 Solanum tuberosum HOM05D001638 ORTHO05D005197 4.2e-181 638.3 418 91.4
CAN.G362.16 Capsicum annuum HOM05D001638 ORTHO05D005197 2.8e-148 529.3 416 81.5
Peaxi162Scf00392g00227 Petunia axillaris HOM05D001638 ORTHO05D005197 1.6e-132 476.9 281 89.3
Rhsim07G0034600 Rhododendron simsii HOM05D001638 ORTHO05D005197 5.8e-122 441.8 332 70.5
vmacro16776 Vaccinium macrocarpon HOM05D001638 ORTHO05D005197 1.6e-119 433.7 332 69.0
CSS0022011 Camellia sinensis var. sinensis HOM05D001638 ORTHO05D005197 3.5e-119 432.6 333 68.8
Dinv44076 Davidia involucrata HOM05D001638 ORTHO05D005197 3.5e-119 432.6 326 70.6
Manes.01G272000 Manihot esculenta HOM05D001638 ORTHO05D005197 1.3e-118 430.6 335 68.7
GSVIVG01018246001 Vitis vinifera HOM05D001638 ORTHO05D005197 3.9e-118 429.1 332 72.0
Nitab4.5_0000914g0150 Nicotiana tabacum HOM05D001638 ORTHO05D005197 8.7e-118 427.9 383 77.3
Actinidia40391 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.5e-117 426.4 420 60.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 9.6e-117 424.5 336 68.2
Cfa011091 Carpinus fangiana HOM05D001638 ORTHO05D005197 5.8e-114 415.2 314 70.1
Thecc.02G084000 Theobroma cacao HOM05D001638 ORTHO05D005197 5.8e-114 415.2 320 68.4
Dinv43635 Davidia involucrata HOM05D001638 ORTHO05D005197 1.7e-113 413.7 323 68.4
Ciclev10015475m.g Citrus clementina HOM05D001638 ORTHO05D005197 2.2e-113 413.3 423 63.6
HanXRQChr01g0007441 Helianthus annuus HOM05D001638 ORTHO05D005197 8.4e-113 411.4 332 66.0
Gohir.A13G033800 Gossypium hirsutum HOM05D001638 ORTHO05D005197 1.9e-112 410.2 309 68.9
Potri.019G085100 Populus trichocarpa HOM05D001638 ORTHO05D005197 1.9e-112 410.2 318 68.6
Duzib132G0757 Durio zibethinus HOM05D001638 ORTHO05D005197 2.4e-112 409.8 323 68.1
Gorai.013G036600 Gossypium raimondii HOM05D001638 ORTHO05D005197 5.5e-112 408.7 309 68.9
Gohir.D13G032100 Gossypium hirsutum HOM05D001638 ORTHO05D005197 7.1e-112 408.3 309 68.9
SGA_v2.0_scaffold5G02962 Striga asiatica HOM05D001638 ORTHO05D005197 1.2e-111 407.5 309 69.9
Nn6g33853 Nelumbo nucifera HOM05D001638 ORTHO05D005197 2.7e-111 406.4 321 66.7
Cc02_g24880 Coffea canephora HOM05D001638 ORTHO05D005197 4.6e-111 405.6 333 67.0
CANSAT56G0649 Cannabis sativa HOM05D001638 ORTHO05D005197 6.0e-111 405.2 310 68.4
DCAR_023354 Daucus carota HOM05D001638 ORTHO05D005197 1.3e-110 404.1 347 62.8
PGR031G2794 Punica granatum HOM05D001638 ORTHO05D005197 1.8e-110 403.7 319 67.1
MSTRG.12501 Avicennia marina HOM05D001638 ORTHO05D005197 2.3e-110 403.3 317 66.9
TAR629G0136 Trochodendron aralioides HOM05D001638 ORTHO05D005197 8.7e-110 401.4 334 65.0
HanXRQChr14g0428901 Helianthus annuus HOM05D001638 ORTHO05D005197 4.3e-109 399.1 333 64.6
Migut.N01781 Erythranthe guttata HOM05D001638 ORTHO05D005197 5.6e-109 398.7 321 66.4
Eucgr.F04452 Eucalyptus grandis HOM05D001638 ORTHO05D005197 9.6e-109 397.9 317 65.6
COL.COLO4_25944 Corchorus olitorius HOM05D001638 ORTHO05D005197 1.6e-108 397.1 315 67.3
Lsat_1_v5_gn_4_15080 Lactuca sativa HOM05D001638 ORTHO05D005197 8.2e-108 394.8 429 58.5
Nitab4.5_0010229g0010 Nicotiana tabacum HOM05D001638 ORTHO05D005197 1.1e-107 394.4 225 92.9
CiPaw.14G021800 Carya illinoinensis HOM05D001638 ORTHO05D005197 6.9e-107 391.7 331 62.8
TAR636G3630 Trochodendron aralioides HOM05D001638 ORTHO05D005197 6.9e-107 391.7 322 66.1
MD02G1217000 Malus domestica HOM05D001638 ORTHO05D005197 2.0e-106 390.2 314 65.9
Ca_04112_v3 Cicer arietinum L. HOM05D001638 ORTHO05D005197 4.5e-106 389.0 321 66.0
arahy.Tifrunner.gnm1.ann1.9JI82G Arachis hypogaea HOM05D001638 ORTHO05D005197 2.2e-105 386.7 319 67.1
MELO3C005976.2 Cucumis melo HOM05D001638 ORTHO05D005197 4.9e-105 385.6 327 64.2
Medtr7g007890 Medicago truncatula HOM05D001638 ORTHO05D005197 4.9e-105 385.6 321 65.7
Thhalv10004255m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 6.5e-105 385.2 308 64.6
Lalb_Chr19g0127051 Lupinus albus HOM05D001638 ORTHO05D005197 6.5e-105 385.2 307 66.1
Sc02g0002980 Simmondsia chinensis HOM05D001638 ORTHO05D005197 8.4e-105 384.8 335 61.5
Prupe.2G127200 Prunus persica HOM05D001638 ORTHO05D005197 1.1e-104 384.4 333 63.4
MBI04_g36329_MAGBIO Magnolia biondii HOM05D001638 ORTHO05D005197 1.4e-104 384.0 353 60.3
arahy.Tifrunner.gnm1.ann1.MQ0E05 Arachis hypogaea HOM05D001638 ORTHO05D005197 1.9e-104 383.6 319 66.5
TWI23G0567 Tripterygium wilfordii HOM05D001638 ORTHO05D005197 3.2e-104 382.9 317 63.4
LjContig00564g0006049 Lotus japonicus HOM05D001638 ORTHO05D005197 4.2e-104 382.5 319 65.8
Medtr5g064850 Medicago truncatula HOM05D001638 ORTHO05D005197 5.5e-104 382.1 320 64.7
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 7.1e-104 381.7 352 61.1
CsaV3_3G007540 Cucumis sativus L. HOM05D001638 ORTHO05D005197 1.6e-103 380.6 311 65.6
Glyma.18G253900 Glycine max HOM05D001638 ORTHO05D005197 2.7e-103 379.8 318 65.1
BraA03t13813Z Brassica rapa HOM05D001638 ORTHO05D005197 6.0e-103 378.6 327 60.9
C07p44980 Brassica napus HOM05D001638 ORTHO05D005197 7.9e-103 378.3 322 60.9
Psat0s3614g0040 Pisum sativum HOM05D001638 ORTHO05D005197 1.0e-102 377.9 421 59.6
SalBow6G5432 Salvia bowleyana HOM05D001638 ORTHO05D005197 1.0e-102 377.9 327 64.5
AT5G61330 Arabidopsis thaliana HOM05D001638 ORTHO05D005197 1.3e-102 377.5 325 59.7
Phvul.008G045000 Phaseolus vulgaris HOM05D001638 ORTHO05D005197 1.3e-102 377.5 334 62.0
A03p46940 Brassica napus HOM05D001638 ORTHO05D005197 3.0e-102 376.3 312 62.8
Glyma.09G089400 Glycine max HOM05D001638 ORTHO05D005197 3.0e-102 376.3 308 65.3
A09p07280 Brassica napus HOM05D001638 ORTHO05D005197 3.9e-102 375.9 334 60.8
Carub.0008s2200 Capsella rubella HOM05D001638 ORTHO05D005197 3.9e-102 375.9 324 59.9
Sp2g24540 Schrenkiella parvula HOM05D001638 ORTHO05D005197 3.9e-102 375.9 308 63.6
BcaC04g23457 Brassica carinata HOM05D001638 ORTHO05D005197 5.1e-102 375.6 320 62.5
AUR62023428 Chenopodium quinoa HOM05D001638 ORTHO05D005197 5.1e-102 375.6 315 64.4
DCAR_029773 Daucus carota HOM05D001638 ORTHO05D005197 5.1e-102 375.6 277 69.3
Sed0004454 Sechium edule HOM05D001638 ORTHO05D005197 1.1e-101 374.4 325 62.2
VMungo1383G3402 Vigna mungo HOM05D001638 ORTHO05D005197 1.1e-101 374.4 414 54.6
RcHm_v2.0_Chr1g0346971 Rosa chinensis HOM05D001638 ORTHO05D005197 2.5e-101 373.2 325 62.2
BolC7t45021H Brassica oleracea HOM05D001638 ORTHO05D005197 3.3e-101 372.9 308 62.0
CARHR275090 Cardamine hirsuta HOM05D001638 ORTHO05D005197 7.4e-101 371.7 308 62.3
Lsat_1_v5_gn_4_70960 Lactuca sativa HOM05D001638 ORTHO05D005197 7.4e-101 371.7 337 62.0
Aa31LG11G2080 Aethionema arabicum HOM05D001638 ORTHO05D005197 9.7e-101 371.3 290 65.9
unitig_37.g13004 Utricularia gibba HOM05D000186 ORTHO05D001124 9.7e-101 371.3 338 58.9
BraA09t36377Z Brassica rapa HOM05D001638 ORTHO05D005197 2.2e-100 370.2 319 61.4
AL8G37990 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.8e-100 369.8 308 62.0
FAN10G2339 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.8e-100 369.8 324 61.1
FAN10G1788 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.7e-100 369.4 324 60.8
FvH4_7g09810 Fragaria vesca HOM05D001638 ORTHO05D005197 4.8e-100 369.0 324 60.5
THA.LOC104818326 Tarenaya hassleriana HOM05D001638 ORTHO05D005197 4.8e-100 369.0 323 61.3
BcaB04g19906 Brassica carinata HOM05D001638 ORTHO05D005197 6.3e-100 368.6 331 60.1
C09p08140 Brassica napus HOM05D001638 ORTHO05D005197 6.3e-100 368.6 320 61.9
BolC9t53726H Brassica oleracea HOM05D001638 ORTHO05D005197 6.3e-100 368.6 320 61.9
FAN01G1872 Fragaria x ananassa HOM05D001638 ORTHO05D005197 1.4e-99 367.5 310 62.9
ClCG05G000380 Citrullus lanatus HOM05D001638 ORTHO05D005197 3.1e-99 366.3 314 63.7
PSO541G3735 Papaver somniferum HOM05D001638 ORTHO05D005197 5.3e-99 365.5 306 63.4
ECA234G3220 Erigeron canadensis HOM05D001638 ORTHO05D005197 5.9e-98 362.1 293 65.9
TPR.G11809 Trifolium pratense HOM05D001638 ORTHO05D005197 5.9e-98 362.1 330 61.2
QL04p031108 Quercus lobata HOM05D001638 ORTHO05D005197 1.0e-97 361.3 337 60.5
PSO017G3357 Papaver somniferum HOM05D001638 ORTHO05D005197 2.2e-97 360.1 288 66.3
Aqoxy7G00848 Aquilegia oxysepala HOM05D001638 ORTHO05D005197 1.4e-96 357.5 346 57.5
PSO170G6800 Papaver somniferum HOM05D001638 ORTHO05D005197 2.5e-96 356.7 307 62.5
Ah.03g133920 Amaranthus hybridus HOM05D001638 ORTHO05D005197 2.7e-95 353.2 410 55.6
BcaC06g33229 Brassica carinata HOM05D001638 ORTHO05D005197 2.7e-95 353.2 323 58.8
EL10Ac1g00784 Beta vulgaris HOM05D001638 ORTHO05D005197 3.6e-95 352.8 423 56.0
Hund17077 Selenicereus undatus HOM05D001638 ORTHO05D005197 6.1e-95 352.1 343 58.3
CDE03G0227 Ceratophyllum demersum HOM05D001638 ORTHO05D005197 4.8e-92 342.4 336 57.4
Os01g0526200 Oryza sativa ssp. japonica HOM05D001638 ORTHO05D005197 1.3e-89 334.3 311 57.2
ATR0057G068 Amborella trichopoda HOM05D001638 ORTHO05D005197 1.7e-89 334.0 307 58.6
Zm00001eb333990 Zea mays HOM05D001638 ORTHO05D005197 5.0e-89 332.4 310 56.5
FAN06G3795 Fragaria x ananassa HOM05D001638 ORTHO05D005197 3.9e-86 322.8 431 45.5
Zm00001eb127190 Zea mays HOM05D001638 ORTHO05D005197 8.8e-86 321.6 309 55.3
HPP92_024242 Vanilla planifolia HOM05D001638 ORTHO05D005197 9.7e-85 318.2 324 54.9
SEGI_12976 Sequoiadendron giganteum HOM05D001638 ORTHO05D005197 4.1e-83 312.8 317 53.0
Thhalv10020921m.g Eutrema salsugineum HOM05D001638 ORTHO05D005197 2.0e-82 310.5 299 57.2
QL01p011221 Quercus lobata HOM05D001638 ORTHO05D005197 8.0e-79 298.5 315 57.1
AL1G10102 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 2.0e-77 293.9 301 54.2
SGA_v2.0_scaffold131G34466 Striga asiatica HOM05D001638 ORTHO05D005197 7.2e-64 248.8 213 62.9
Mapoly0029s0122 Marchantia polymorpha HOM05D001638 ORTHO05D005197 7.5e-61 238.8 330 43.9
Pp3c5_7370 Physcomitrium patens HOM05D001638 ORTHO05D005197 1.7e-57 227.6 317 41.3
MD07G1102000 Malus domestica HOM05D001638 ORTHO05D005197 5.2e-54 216.1 205 57.1
SHI03505 Sapria himalayana HOM05D001638 ORTHO05D005197 1.6e-47 194.5 302 43.7
AUR62013726 Chenopodium quinoa HOM05D001638 ORTHO05D005197 6.8e-46 189.1 135 74.1
Atru.chr5.164 Acer truncatum HOM05D001638 ORTHO05D005197 1.6e-42 177.9 145 62.8
Atru.chr5.165 Acer truncatum HOM05D001638 ORTHO05D005197 6.2e-39 166.0 110 77.3
Actinidia12156 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.3e-38 164.1 116 69.8
AL4G38750 Arabidopsis lyrata HOM05D001638 ORTHO05D005197 8.9e-38 162.2 157 56.1
arahy.Tifrunner.gnm1.ann1.XG8PKW Arachis hypogaea HOM05D001638 ORTHO05D005197 5.8e-37 159.5 173 52.6
SMO141G0070 Selaginella moellendorffii HOM05D001638 ORTHO05D005197 1.1e-35 155.2 243 40.3
FAN06G4892 Fragaria x ananassa HOM05D001638 ORTHO05D005197 5.4e-35 152.9 153 52.9
Cre13.g587000 Chlamydomonas reinhardtii HOM05D001638 ORTHO05D005197 9.2e-35 152.1 369 31.7
FAN03G2111 Fragaria x ananassa HOM05D001638 ORTHO05D001690 2.1e-34 151.0 151 53.0
MCO04G285 Micromonas commoda HOM05D001638 ORTHO05D005197 3.9e-33 146.7 334 31.1
Haze_17173 Corylus avellana HOM05D001638 ORTHO05D005197 1.4e-30 138.3 208 47.1
MD02G1263900 Malus domestica HOM05D001638 ORTHO05D005197 4.6e-26 123.2 98 64.3
Cpa.g.sc116.74 Carica papaya HOM05D001638 ORTHO05D005197 5.2e-22 109.8 75 73.3
MD07G1101900 Malus domestica HOM05D001638 ORTHO05D005197 2.0e-21 107.8 157 42.7
Actinidia12155 Actinidia chinensis HOM05D001638 ORTHO05D005197 2.9e-20 104.0 80 65.0
Actinidia12157 Actinidia chinensis HOM05D001638 ORTHO05D005197 3.8e-20 103.6 73 75.3
CBR_g1066 Chara braunii HOM05D001638 ORTHO05D005197 1.9e-19 101.3 159 39.6
Cpa.g.c42599 Carica papaya HOM05D001638 ORTHO05D005197 7.1e-19 99.4 57 84.2
AagrBONN_evm.TU.Sc2ySwM_368.1521 Anthoceros agrestis HOM05D001638 ORTHO05D005197 2.7e-18 97.4 85 58.8
FAN06G4261 Fragaria x ananassa HOM05D001638 ORTHO05D005197 2.7e-18 97.4 133 48.9
arahy.Tifrunner.gnm1.ann1.HIFV4E Arachis hypogaea HOM05D001638 ORTHO05D005197 1.7e-17 94.7 176 35.8
FvH4_7g09370 Fragaria vesca HOM05D001638 ORTHO05D005197 3.3e-16 90.5 131 46.6
PRCOL_00005874 Prasinoderma coloniale HOM05D001638 ORTHO05D005197 1.6e-15 88.2 319 28.8
arahy.Tifrunner.gnm1.ann1.11FR17 Arachis hypogaea HOM05D001638 ORTHO05D005197 2.1e-15 87.8 61 67.2
arahy.Tifrunner.gnm1.ann1.XV6DNZ Arachis hypogaea HOM05D001638 ORTHO05D005197 5.2e-14 83.2 51 84.3
MD02G1264000 Malus domestica HOM05D001638 ORTHO05D005197 5.8e-13 79.7 60 71.7
Oeu051899.1 Olea europaea HOM05D001638 ORTHO05D005197 9.9e-13 79.0 54 75.9
MD02G1264200 Malus domestica HOM05D001638 ORTHO05D005197 1.3e-12 78.6 55 72.7
FAN06G2650 Fragaria x ananassa HOM05D001638 ORTHO05D005197 8.4e-12 75.9 87 52.9
Oeu021607.1 Olea europaea HOM05D001638 ORTHO05D005197 3.2e-11 73.9 54 70.4
MD07G1102300 Malus domestica HOM05D001638 ORTHO05D005197 7.1e-11 72.8 101 45.5
Cfa024988 Carpinus fangiana HOM05D001638 ORTHO05D124161 2.1e-10 71.2 298 26.2
Sed0021805 Sechium edule HOM05D001638 ORTHO05D005197 1.0e-09 68.9 108 45.4
CBR_g1068 Chara braunii HOM05D001638 ORTHO05D005197 1.1e-06 58.9 99 32.3
MD07G1073400 Malus domestica HOM05D001638 ORTHO05D005197 1.4e-06 58.5 58 56.9
Nitab4.5_0010229g0020 Nicotiana tabacum HOM05D001638 ORTHO05D005197 3.1e-06 57.4 156 33.3
arahy.Tifrunner.gnm1.ann1.R2G04T Arachis hypogaea HOM05D001638 ORTHO05D005197 9.0e-06 55.8 33 81.8


User provided reference genes

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