Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090090.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 9.3e-110 400.2 200 100.0
Sopen01g035900 Solanum pennellii HOM05D002564 ORTHO05D011154 2.9e-87 325.5 226 75.7
Solyc01g090100.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.4e-73 280.0 190 72.1
Solyc01g090110.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 3.7e-66 255.4 238 58.4
Solyc01g057510.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 7.5e-59 231.1 227 55.9
Solyc01g090080.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 3.0e-52 209.1 247 48.2
Nitab4.5_0000563g0280 Nicotiana tabacum HOM05D002564 ORTHO05D011154 2.3e-44 183.0 239 42.3
Nitab4.5_0003596g0040 Nicotiana tabacum HOM05D002564 ORTHO05D011154 1.8e-41 173.3 247 41.3
CAN.G1497.4 Capsicum annuum HOM05D002564 ORTHO05D011154 1.0e-39 167.5 225 44.0
CAN.G1497.3 Capsicum annuum HOM05D002564 ORTHO05D011154 6.6e-39 164.9 230 43.5
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 2.3e-36 156.4 187 47.1
PGSC0003DMG400039124 Solanum tuberosum HOM05D002564 ORTHO05D011154 4.6e-32 142.1 192 39.1
PGSC0003DMG400011982 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.9e-30 136.7 188 42.0
PGSC0003DMG400011987 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.1e-28 131.0 149 45.6
Sopen01g035890 Solanum pennellii HOM05D002564 ORTHO05D011154 1.8e-28 130.2 238 35.3
Solyc01g090070.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.2e-27 127.5 238 34.9
Solyc01g090030.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 4.4e-27 125.6 229 33.2
Solyc01g090010.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 3.7e-26 122.5 236 36.4
PGSC0003DMG400036059 Solanum tuberosum HOM05D002564 ORTHO05D011154 3.5e-24 115.9 227 35.2
CAN.G1585.17 Capsicum annuum HOM05D002564 ORTHO05D011154 6.0e-24 115.2 221 33.9
Sopen01g035790 Solanum pennellii HOM05D002564 ORTHO05D011154 6.6e-23 111.7 237 33.3
Solyc01g089920.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 7.3e-22 108.2 231 33.8
Solyc01g090000.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.8e-21 106.3 227 31.3
PGSC0003DMG400042267 Solanum tuberosum HOM05D002564 ORTHO05D011154 4.7e-21 105.5 199 36.7
PGSC0003DMG400011986 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.1e-20 104.4 149 45.0
PGSC0003DMG400017370 Solanum tuberosum HOM05D002564 ORTHO05D394569 1.1e-20 104.4 129 44.2
Solyc03g113825.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 5.2e-20 102.1 237 32.1
PGSC0003DMG400042136 Solanum tuberosum HOM05D002564 ORTHO05D398490 8.9e-20 101.3 174 34.5
Sopen01g035870 Solanum pennellii HOM05D002564 ORTHO05D011154 1.7e-18 97.1 217 33.6
Sopen01g035770 Solanum pennellii HOM05D002564 ORTHO05D011154 2.2e-18 96.7 173 39.3
Solyc01g089940.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.6e-16 90.5 175 32.6
Solyc03g113840.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 3.9e-15 85.9 124 44.4
Sopen01g035860 Solanum pennellii HOM05D002564 ORTHO05D011154 5.1e-15 85.5 126 43.7
CAN.G1585.16 Capsicum annuum HOM05D002564 ORTHO05D011154 1.9e-14 83.6 224 27.7
PGSC0003DMG400011988 Solanum tuberosum HOM05D002564 ORTHO05D011154 6.8e-12 75.1 77 53.2
PGSC0003DMG400045632 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.2e-11 74.3 47 72.3
PGSC0003DMG400046680 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.2e-11 74.3 190 28.4
PGSC0003DMG400028015 Solanum tuberosum HOM05D002564 ORTHO05D011154 1.5e-11 73.9 70 51.4
CAN.G1497.2 Capsicum annuum HOM05D002564 ORTHO05D011154 3.4e-11 72.8 139 31.7
Phvul.003G224400 Phaseolus vulgaris HOM05D002564 ORTHO05D003945 7.6e-11 71.6 176 31.8
TWI60G0953 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 1.3e-10 70.9 168 32.1
PSO782G2969 Papaver somniferum HOM05D002564 ORTHO05D003945 2.2e-10 70.1 151 31.8
TWI15G0629 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 2.9e-10 69.7 168 31.5
PSO063G6369 Papaver somniferum HOM05D002564 ORTHO05D003945 3.8e-10 69.3 154 33.8
VMungo0251G2763 Vigna mungo HOM05D002564 ORTHO05D003945 3.8e-10 69.3 180 31.1
Medtr5g013340 Medicago truncatula HOM05D002564 ORTHO05D003945 6.4e-10 68.6 149 30.9
Ca_24608_v3 Cicer arietinum L. HOM05D002564 ORTHO05D003945 1.1e-09 67.8 142 33.1
Oeu037378.2 Olea europaea HOM05D002564 ORTHO05D003945 1.1e-09 67.8 169 32.0
Psat2g176040 Pisum sativum HOM05D002564 ORTHO05D003945 1.4e-09 67.4 142 32.4
Atru.chr9.1224 Acer truncatum HOM05D002564 ORTHO05D003945 1.9e-09 67.0 134 33.6
CSS0020501 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 1.9e-09 67.0 133 33.8
Aa31LG6G330 Aethionema arabicum HOM05D002564 ORTHO05D003945 2.4e-09 66.6 129 33.3
arahy.Tifrunner.gnm1.ann1.QND09G Arachis hypogaea HOM05D002564 ORTHO05D003945 2.4e-09 66.6 180 26.7
TPR.G31430 Trifolium pratense HOM05D002564 ORTHO05D003945 2.4e-09 66.6 142 33.1
arahy.Tifrunner.gnm1.ann1.0MYH4H Arachis hypogaea HOM05D002564 ORTHO05D003945 3.2e-09 66.2 180 27.2
TAR629G3463 Trochodendron aralioides HOM05D002564 ORTHO05D003945 3.2e-09 66.2 133 32.3
Ah.07g199070 Amaranthus hybridus HOM05D002564 ORTHO05D003945 4.1e-09 65.9 129 34.1
Cpa.g.sc89.3 Carica papaya HOM05D002564 ORTHO05D003945 4.1e-09 65.9 133 33.8
Glyma.17G146500 Glycine max HOM05D002564 ORTHO05D003945 4.1e-09 65.9 149 30.9
Hund11323 Selenicereus undatus HOM05D002564 ORTHO05D003945 4.1e-09 65.9 133 33.1
Aqoxy3G02682 Aquilegia oxysepala HOM05D002564 ORTHO05D003945 5.4e-09 65.5 149 30.2
CSS0031131 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 5.4e-09 65.5 133 32.3
Psat4g075160 Pisum sativum HOM05D002564 ORTHO05D003945 5.4e-09 65.5 142 32.4
Nn1g00814 Nelumbo nucifera HOM05D002564 ORTHO05D003945 7.1e-09 65.1 168 31.0
Actinidia10860 Actinidia chinensis HOM05D002564 ORTHO05D003945 9.2e-09 64.7 157 30.6
Nitab4.5_0000500g0100 Nicotiana tabacum HOM05D002564 ORTHO05D003945 9.2e-09 64.7 133 33.8
Migut.E00823 Erythranthe guttata HOM05D002564 ORTHO05D003945 1.2e-08 64.3 154 30.5
Glyma.01G205200 Glycine max HOM05D002564 ORTHO05D003945 1.2e-08 64.3 142 31.7
Hma1.2p1_0840F.1_g226550 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 1.2e-08 64.3 146 32.2
Oeu054279.1 Olea europaea HOM05D002564 ORTHO05D003945 1.2e-08 64.3 133 33.1
TAR004G0001 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.2e-08 64.3 133 31.6
TAR374G0594 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.2e-08 64.3 133 31.6
Zm00001eb208690 Zea mays HOM05D002564 ORTHO05D003945 1.2e-08 64.3 180 27.8
Zm00001eb230820 Zea mays HOM05D002564 ORTHO05D003945 1.2e-08 64.3 187 28.9
CiPaw.11G069700 Carya illinoinensis HOM05D002564 ORTHO05D003945 1.6e-08 63.9 149 30.2
Peaxi162Scf00102g00836 Petunia axillaris HOM05D002564 ORTHO05D003945 1.6e-08 63.9 133 33.1
AL7G37010 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 2.1e-08 63.5 129 31.8
BcaC03g16944 Brassica carinata HOM05D002564 ORTHO05D003945 2.1e-08 63.5 135 33.3
AUR62018857 Chenopodium quinoa HOM05D002564 ORTHO05D003945 2.1e-08 63.5 133 31.6
ClCG09G012790 Citrullus lanatus HOM05D002564 ORTHO05D003945 2.1e-08 63.5 185 29.7
MELO3C003331.2 Cucumis melo HOM05D002564 ORTHO05D003945 2.1e-08 63.5 142 31.7
CsaV3_3G049850 Cucumis sativus L. HOM05D002564 ORTHO05D003945 2.1e-08 63.5 142 31.0
Lj4g0000920 Lotus japonicus HOM05D002564 ORTHO05D003945 2.1e-08 63.5 142 31.0
Manes.02G044200 Manihot esculenta HOM05D002564 ORTHO05D003945 2.1e-08 63.5 133 31.6
Nitab4.5_0000185g0160 Nicotiana tabacum HOM05D002564 ORTHO05D003945 2.1e-08 63.5 168 30.4
Os02g0125300 Oryza sativa ssp. japonica HOM05D002564 ORTHO05D003945 2.1e-08 63.5 142 29.6
SalBow1G5297 Salvia bowleyana HOM05D002564 ORTHO05D003945 2.1e-08 63.5 133 31.6
SalBow1G6888 Salvia bowleyana HOM05D002564 ORTHO05D003945 2.1e-08 63.5 133 31.6
Aa31sc58G60 Aethionema arabicum HOM05D002564 ORTHO05D003945 2.7e-08 63.2 170 28.8
ATR0665G511 Amborella trichopoda HOM05D002564 ORTHO05D003945 2.7e-08 63.2 142 31.7
AL8G10960 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 2.7e-08 63.2 133 30.1
MSTRG.13775 Avicennia marina HOM05D002564 ORTHO05D003945 2.7e-08 63.2 168 30.4
Carub.0008s0063 Capsella rubella HOM05D002564 ORTHO05D003945 2.7e-08 63.2 133 30.1
CiPaw.12G047300 Carya illinoinensis HOM05D002564 ORTHO05D003945 2.7e-08 63.2 184 28.3
AUR62007154 Chenopodium quinoa HOM05D002564 ORTHO05D003945 2.7e-08 63.2 133 31.6
Lj2C228T1 Lonicera japonica HOM05D002564 ORTHO05D003945 2.7e-08 63.2 132 31.8
Manes.01G087400 Manihot esculenta HOM05D002564 ORTHO05D003945 2.7e-08 63.2 133 31.6
Nitab4.5_0006594g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 2.7e-08 63.2 168 30.4
Peaxi162Scf00446g00018 Petunia axillaris HOM05D002564 ORTHO05D003945 2.7e-08 63.2 133 33.1
Potri.001G151800 Populus trichocarpa HOM05D002564 ORTHO05D003945 2.7e-08 63.2 133 31.6
Sc22g0001110 Simmondsia chinensis HOM05D002564 ORTHO05D003945 2.7e-08 63.2 133 32.3
Ciclev10021901m.g Citrus clementina HOM05D002564 ORTHO05D003945 3.5e-08 62.8 138 31.9
Thhalv10001130m.g Eutrema salsugineum HOM05D002564 ORTHO05D003945 3.5e-08 62.8 133 30.8
Potri.003G082700 Populus trichocarpa HOM05D002564 ORTHO05D003945 3.5e-08 62.8 133 33.1
Rhsim07G0118600 Rhododendron simsii HOM05D002564 ORTHO05D003945 3.5e-08 62.8 168 29.2
Rhsim07G0118800 Rhododendron simsii HOM05D002564 ORTHO05D003945 3.5e-08 62.8 168 29.2
THA.LOC104806682 Tarenaya hassleriana HOM05D002564 ORTHO05D003945 3.5e-08 62.8 133 32.3
Glyma.05G064700 Glycine max HOM05D002564 ORTHO05D003945 4.6e-08 62.4 143 30.1
Glyma.11G037700 Glycine max HOM05D002564 ORTHO05D003945 4.6e-08 62.4 142 31.0
Oeu017210.1 Olea europaea HOM05D002564 ORTHO05D003945 4.6e-08 62.4 133 33.1
Sp2g11930 Schrenkiella parvula HOM05D002564 ORTHO05D003945 4.6e-08 62.4 135 32.6
AT5G47120 Arabidopsis thaliana HOM05D002564 ORTHO05D003945 6.0e-08 62.0 129 31.0
BcaB07g30791 Brassica carinata HOM05D002564 ORTHO05D003945 6.0e-08 62.0 135 32.6
BcaC04g21644 Brassica carinata HOM05D002564 ORTHO05D003945 6.0e-08 62.0 135 32.6
A09p22870 Brassica napus HOM05D002564 ORTHO05D003945 6.0e-08 62.0 135 32.6
BolC9t55809H Brassica oleracea HOM05D002564 ORTHO05D003945 6.0e-08 62.0 135 32.6
BraA09t37889Z Brassica rapa HOM05D002564 ORTHO05D003945 6.0e-08 62.0 135 32.6
Carub.0007s2380 Capsella rubella HOM05D002564 ORTHO05D003945 6.0e-08 62.0 129 31.8
C09p29450 Brassica napus HOM05D002564 ORTHO05D003945 7.8e-08 61.6 135 32.6
Hma1.2p1_3142F.1_g333090 Hydrangea macrophylla HOM05D002564 ORTHO05D003945 7.8e-08 61.6 171 28.1
MD04G1051800 Malus domestica HOM05D002564 ORTHO05D003945 7.8e-08 61.6 133 30.8
THA.LOC104798354 Tarenaya hassleriana HOM05D002564 ORTHO05D003945 7.8e-08 61.6 168 29.8
A02p30870 Brassica napus HOM05D002564 ORTHO05D003945 1.0e-07 61.2 135 31.9
C02p48480 Brassica napus HOM05D002564 ORTHO05D003945 1.0e-07 61.2 135 31.9
BolC2t10881H Brassica oleracea HOM05D002564 ORTHO05D003945 1.0e-07 61.2 136 32.4
BraA02t08100Z Brassica rapa HOM05D002564 ORTHO05D003945 1.0e-07 61.2 135 31.9
Lalb_Chr09g0324201 Lupinus albus HOM05D002564 ORTHO05D003945 1.0e-07 61.2 142 29.6
VMungo1215G2437 Vigna mungo HOM05D002564 ORTHO05D003945 1.0e-07 61.2 142 29.6
Lj2g0011904 Lotus japonicus HOM05D002564 ORTHO05D003945 1.3e-07 60.8 142 29.6
SGA_v2.0_scaffold6G03164 Striga asiatica HOM05D002564 ORTHO05D003945 1.3e-07 60.8 133 30.8
GSVIVG01005380001 Vitis vinifera HOM05D002564 ORTHO05D003945 1.3e-07 60.8 168 29.2
Gorai.004G193400 Gossypium raimondii HOM05D002564 ORTHO05D003945 1.7e-07 60.5 133 29.3
TAR375G0233 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.7e-07 60.5 133 30.8
Lsat_1_v5_gn_0_33340 Lactuca sativa HOM05D002564 ORTHO05D003945 2.3e-07 60.1 140 30.7
Lalb_Chr16g0379371 Lupinus albus HOM05D002564 ORTHO05D003945 2.3e-07 60.1 142 29.6
MD06G1048300 Malus domestica HOM05D002564 ORTHO05D003945 2.3e-07 60.1 133 29.3
Phvul.002G001400 Phaseolus vulgaris HOM05D002564 ORTHO05D003945 2.3e-07 60.1 142 29.6
unitig_22.g5495 Utricularia gibba HOM05D002564 ORTHO05D003945 2.3e-07 60.1 182 29.7
CARHR174270 Cardamine hirsuta HOM05D002564 ORTHO05D003945 3.0e-07 59.7 133 30.8
COL.COLO4_07510 Corchorus olitorius HOM05D002564 ORTHO05D003945 3.0e-07 59.7 129 32.6
Dinv28867 Davidia involucrata HOM05D002564 ORTHO05D003945 3.9e-07 59.3 124 32.3
ECA240G1580 Erigeron canadensis HOM05D002564 ORTHO05D003945 3.9e-07 59.3 168 28.6
vmacro00044 Vaccinium macrocarpon HOM05D002564 ORTHO05D003945 3.9e-07 59.3 135 32.6
Zm00001eb379560 Zea mays HOM05D002564 ORTHO05D003945 3.9e-07 59.3 142 27.5
arahy.Tifrunner.gnm1.ann1.2KFK0B Arachis hypogaea HOM05D002564 ORTHO05D003945 5.1e-07 58.9 137 30.7
arahy.Tifrunner.gnm1.ann1.68ECIB Arachis hypogaea HOM05D002564 ORTHO05D003945 5.1e-07 58.9 137 30.7
DCAR_000212 Daucus carota HOM05D002564 ORTHO05D003945 5.1e-07 58.9 133 30.8
Duzib205G0006 Durio zibethinus HOM05D002564 ORTHO05D003945 5.1e-07 58.9 149 28.2
Gohir.D08G184100 Gossypium hirsutum HOM05D002564 ORTHO05D003945 6.6e-07 58.5 133 29.3
HanXRQChr03g0089811 Helianthus annuus HOM05D002564 ORTHO05D003945 6.6e-07 58.5 133 30.1
Thecc.03G242800 Theobroma cacao HOM05D002564 ORTHO05D003945 6.6e-07 58.5 133 30.1
Gohir.A11G028900 Gossypium hirsutum HOM05D002564 ORTHO05D003945 8.7e-07 58.2 133 30.1
PGSC0003DMG400026250 Solanum tuberosum HOM05D002564 ORTHO05D003945 8.7e-07 58.2 133 31.6
CAN.G761.18 Capsicum annuum HOM05D002564 ORTHO05D003945 1.1e-06 57.8 133 31.6
Gohir.A08G165400 Gossypium hirsutum HOM05D002564 ORTHO05D003945 1.1e-06 57.8 133 28.6
Cc08_g11460 Coffea canephora HOM05D002564 ORTHO05D003945 1.5e-06 57.4 150 29.3
Gohir.A03G004800 Gossypium hirsutum HOM05D002564 ORTHO05D003945 1.9e-06 57.0 133 29.3
Lsat_1_v5_gn_6_94980 Lactuca sativa HOM05D002564 ORTHO05D003945 1.9e-06 57.0 168 28.0
SHI07818 Sapria himalayana HOM05D002564 ORTHO05D003945 1.9e-06 57.0 141 30.5
Solyc08g077980.4 Solanum lycopersicum HOM05D002564 ORTHO05D003945 1.9e-06 57.0 133 30.8
Sopen08g026490 Solanum pennellii HOM05D002564 ORTHO05D003945 1.9e-06 57.0 133 30.8
Gohir.D11G027400 Gossypium hirsutum HOM05D002564 ORTHO05D003945 2.5e-06 56.6 133 29.3
Gorai.007G029900 Gossypium raimondii HOM05D002564 ORTHO05D003945 2.5e-06 56.6 133 29.3
Duzib068G0289 Durio zibethinus HOM05D002564 ORTHO05D003945 3.3e-06 56.2 133 30.1
FAN13G0033 Fragaria x ananassa HOM05D002564 ORTHO05D003945 3.3e-06 56.2 133 29.3
FAN13G1850 Fragaria x ananassa HOM05D002564 ORTHO05D003945 3.3e-06 56.2 133 29.3
Gohir.D12G216300 Gossypium hirsutum HOM05D002564 ORTHO05D003945 3.3e-06 56.2 133 30.1
Gorai.008G231700 Gossypium raimondii HOM05D002564 ORTHO05D003945 3.3e-06 56.2 133 30.1
RcHm_v2.0_Chr7g0205291 Rosa chinensis HOM05D002564 ORTHO05D003945 3.3e-06 56.2 133 28.6
Cfa012672 Carpinus fangiana HOM05D002564 ORTHO05D003945 4.3e-06 55.8 152 27.6
Eucgr.E00365 Eucalyptus grandis HOM05D002564 ORTHO05D003945 4.3e-06 55.8 133 30.8
FAN18G0105 Fragaria x ananassa HOM05D002564 ORTHO05D003945 4.3e-06 55.8 133 28.6
Gohir.A12G213700 Gossypium hirsutum HOM05D002564 ORTHO05D003945 4.3e-06 55.8 133 29.3
HanXRQChr13g0418211 Helianthus annuus HOM05D002564 ORTHO05D003945 4.3e-06 55.8 133 28.6
Duzib084G1389 Durio zibethinus HOM05D002564 ORTHO05D003945 5.6e-06 55.5 133 28.6
Haze_07974 Corylus avellana HOM05D002564 ORTHO05D003945 7.3e-06 55.1 133 30.1
Prupe.5G058500 Prunus persica HOM05D002564 ORTHO05D003945 9.6e-06 54.7 133 27.1
PGR042G0532 Punica granatum HOM05D002564 ORTHO05D003945 9.6e-06 54.7 133 27.8
QL12p009056 Quercus lobata HOM05D002564 ORTHO05D003945 9.6e-06 54.7 133 29.3


User provided reference genes

Program Settings