Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g090030.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 5.3e-139 497.7 250 100.0
Sopen01g035870 Solanum pennellii HOM05D002564 ORTHO05D011154 3.0e-113 412.1 250 86.4
Sopen01g035790 Solanum pennellii HOM05D002564 ORTHO05D011154 3.0e-81 305.8 240 69.2
Solyc03g113825.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 7.9e-74 281.2 241 66.4
Solyc01g089940.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 8.1e-71 271.2 177 78.0
Sopen01g035900 Solanum pennellii HOM05D002564 ORTHO05D011154 1.3e-55 220.7 238 50.8
Solyc01g090080.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.6e-55 220.3 238 50.8
Solyc01g090110.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.5e-53 213.8 232 52.6
Solyc01g057510.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.2e-52 209.9 232 51.7
PGSC0003DMG400011982 Solanum tuberosum HOM05D002564 ORTHO05D011154 2.1e-50 203.4 240 49.6
CAN.G1497.4 Capsicum annuum HOM05D002564 ORTHO05D011154 3.3e-48 196.1 240 46.7
Nitab4.5_0000563g0280 Nicotiana tabacum HOM05D002564 ORTHO05D011154 3.3e-48 196.1 233 46.8
Nitab4.5_0003596g0040 Nicotiana tabacum HOM05D002564 ORTHO05D011154 2.2e-47 193.4 240 46.2
CAN.G1497.3 Capsicum annuum HOM05D002564 ORTHO05D011154 3.7e-47 192.6 230 47.4
Solyc01g090010.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.0e-41 174.5 240 42.9
PGSC0003DMG400036059 Solanum tuberosum HOM05D002564 ORTHO05D011154 5.7e-40 168.7 240 44.6
Solyc01g090070.2 Solanum lycopersicum HOM05D002564 ORTHO05D011154 4.8e-39 165.6 230 43.0
Sopen01g035890 Solanum pennellii HOM05D002564 ORTHO05D011154 1.4e-38 164.1 230 42.6
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 9.4e-35 151.4 190 48.9
CAN.G1585.17 Capsicum annuum HOM05D002564 ORTHO05D011154 5.7e-32 142.1 239 36.8
Solyc01g090100.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.3e-31 141.0 232 36.6
Solyc01g089920.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.4e-30 137.5 235 38.7
PGSC0003DMG400011987 Solanum tuberosum HOM05D002564 ORTHO05D011154 5.3e-30 135.6 228 37.7
Solyc01g090000.1 Solanum lycopersicum HOM05D002564 ORTHO05D011154 1.6e-29 134.0 228 33.8
Solyc01g090090.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 5.0e-28 129.0 229 33.2
Sopen01g035770 Solanum pennellii HOM05D002564 ORTHO05D011154 2.1e-26 123.6 240 35.8
CAN.G1585.16 Capsicum annuum HOM05D002564 ORTHO05D011154 1.3e-23 114.4 233 34.3
Sopen01g035880 Solanum pennellii HOM05D002564 ORTHO05D011154 6.3e-23 112.1 106 58.5
PGSC0003DMG400039124 Solanum tuberosum HOM05D002564 ORTHO05D011154 6.3e-23 112.1 237 31.2
PGSC0003DMG400011988 Solanum tuberosum HOM05D002564 ORTHO05D011154 9.1e-22 108.2 81 71.6
Sopen01g035860 Solanum pennellii HOM05D002564 ORTHO05D011154 7.5e-16 88.6 100 51.0
Solyc03g113840.3 Solanum lycopersicum HOM05D003119 ORTHO05D003559 4.1e-14 82.8 126 39.7
PGSC0003DMG400011986 Solanum tuberosum HOM05D002564 ORTHO05D011154 4.1e-14 82.8 148 38.5
TAR629G3463 Trochodendron aralioides HOM05D002564 ORTHO05D003945 4.1e-14 82.8 236 25.8
PSO782G2969 Papaver somniferum HOM05D002564 ORTHO05D003945 9.1e-14 81.6 234 24.4
PSO063G6369 Papaver somniferum HOM05D002564 ORTHO05D003945 1.6e-13 80.9 234 24.4
PGSC0003DMG400042136 Solanum tuberosum HOM05D002564 ORTHO05D398490 3.5e-13 79.7 150 33.3
Nitab4.5_0006594g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 1.0e-12 78.2 244 26.2
PGSC0003DMG400029184 Solanum tuberosum HOM05D002564 ORTHO05D396153 1.0e-12 78.2 76 55.3
CsaV3_3G049850 Cucumis sativus L. HOM05D002564 ORTHO05D003945 1.3e-12 77.8 245 24.9
Cpa.g.sc89.3 Carica papaya HOM05D002564 ORTHO05D003945 1.7e-12 77.4 243 24.3
Migut.E00823 Erythranthe guttata HOM05D002564 ORTHO05D003945 1.7e-12 77.4 237 25.3
Rhsim07G0118600 Rhododendron simsii HOM05D002564 ORTHO05D003945 1.7e-12 77.4 249 25.7
A02p30870 Brassica napus HOM05D002564 ORTHO05D003945 2.3e-12 77.0 238 25.2
PGSC0003DMG400042267 Solanum tuberosum HOM05D002564 ORTHO05D011154 2.3e-12 77.0 147 33.3
TWI15G0629 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 2.9e-12 76.6 245 24.1
BcaC03g16944 Brassica carinata HOM05D002564 ORTHO05D003945 3.8e-12 76.3 238 24.8
MELO3C003331.2 Cucumis melo HOM05D002564 ORTHO05D003945 3.8e-12 76.3 245 24.9
Nitab4.5_0000185g0160 Nicotiana tabacum HOM05D002564 ORTHO05D003945 3.8e-12 76.3 240 25.8
Aqoxy3G02682 Aquilegia oxysepala HOM05D002564 ORTHO05D003945 5.0e-12 75.9 229 24.0
TAR375G0233 Trochodendron aralioides HOM05D002564 ORTHO05D003945 5.0e-12 75.9 226 24.8
Cc08_g11460 Coffea canephora HOM05D002564 ORTHO05D003945 6.5e-12 75.5 233 26.2
C02p48480 Brassica napus HOM05D002564 ORTHO05D003945 8.6e-12 75.1 238 24.4
Nn1g00814 Nelumbo nucifera HOM05D002564 ORTHO05D003945 8.6e-12 75.1 229 24.0
TAR004G0001 Trochodendron aralioides HOM05D002564 ORTHO05D003945 8.6e-12 75.1 231 25.5
FAN18G0105 Fragaria x ananassa HOM05D002564 ORTHO05D003945 1.1e-11 74.7 251 23.9
Aa31sc58G60 Aethionema arabicum HOM05D002564 ORTHO05D003945 1.5e-11 74.3 245 24.1
Thhalv10001130m.g Eutrema salsugineum HOM05D002564 ORTHO05D003945 1.5e-11 74.3 250 24.4
Peaxi162Scf00102g00836 Petunia axillaris HOM05D002564 ORTHO05D003945 1.5e-11 74.3 248 25.8
TWI60G0953 Tripterygium wilfordii HOM05D002564 ORTHO05D003945 1.5e-11 74.3 242 24.4
MSTRG.13775 Avicennia marina HOM05D002564 ORTHO05D003945 1.9e-11 73.9 229 26.6
RcHm_v2.0_Chr7g0205291 Rosa chinensis HOM05D002564 ORTHO05D003945 1.9e-11 73.9 251 23.5
TAR374G0594 Trochodendron aralioides HOM05D002564 ORTHO05D003945 1.9e-11 73.9 231 25.1
Lj2C228T1 Lonicera japonica HOM05D002564 ORTHO05D003945 2.5e-11 73.6 247 25.5
Nitab4.5_0000500g0100 Nicotiana tabacum HOM05D002564 ORTHO05D003945 2.5e-11 73.6 220 27.7
Oeu017210.1 Olea europaea HOM05D002564 ORTHO05D003945 2.5e-11 73.6 235 27.2
SalBow1G5297 Salvia bowleyana HOM05D002564 ORTHO05D003945 2.5e-11 73.6 226 25.7
SalBow1G6888 Salvia bowleyana HOM05D002564 ORTHO05D003945 2.5e-11 73.6 226 25.7
SalBow5G2822 Salvia bowleyana HOM05D002564 ORTHO05D035172 2.5e-11 73.6 224 26.3
A09p22870 Brassica napus HOM05D002564 ORTHO05D003945 3.2e-11 73.2 237 24.1
BraA09t37889Z Brassica rapa HOM05D002564 ORTHO05D003945 3.2e-11 73.2 237 24.1
FvH4_5g20220 Fragaria vesca HOM05D002564 ORTHO05D003945 3.2e-11 73.2 245 23.3
FAN13G1850 Fragaria x ananassa HOM05D002564 ORTHO05D003945 3.2e-11 73.2 251 23.5
Rhsim07G0118800 Rhododendron simsii HOM05D002564 ORTHO05D003945 3.2e-11 73.2 249 25.3
AL8G10960 Arabidopsis lyrata HOM05D002564 ORTHO05D003945 4.2e-11 72.8 250 24.0
BcaB07g30791 Brassica carinata HOM05D002564 ORTHO05D003945 4.2e-11 72.8 237 24.1
CARHR174270 Cardamine hirsuta HOM05D002564 ORTHO05D003945 4.2e-11 72.8 250 25.2
MD04G1051800 Malus domestica HOM05D002564 ORTHO05D003945 4.2e-11 72.8 243 22.6
MD06G1048300 Malus domestica HOM05D002564 ORTHO05D003945 4.2e-11 72.8 250 22.8
Ciclev10021901m.g Citrus clementina HOM05D002564 ORTHO05D003945 7.2e-11 72.0 240 25.0
Oeu054279.1 Olea europaea HOM05D002564 ORTHO05D003945 7.2e-11 72.0 232 25.0
CSS0020501 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 9.5e-11 71.6 227 26.0
AUR62018857 Chenopodium quinoa HOM05D002564 ORTHO05D003945 9.5e-11 71.6 232 23.7
CANSAT21G2002 Cannabis sativa HOM05D002564 ORTHO05D003945 1.2e-10 71.2 246 22.8
Potri.003G082700 Populus trichocarpa HOM05D002564 ORTHO05D003945 1.2e-10 71.2 227 24.7
AUR62007154 Chenopodium quinoa HOM05D002564 ORTHO05D003945 1.6e-10 70.9 208 25.5
Haze_07974 Corylus avellana HOM05D002564 ORTHO05D003945 2.8e-10 70.1 246 24.4
Glyma.05G064700 Glycine max HOM05D002564 ORTHO05D003945 2.8e-10 70.1 225 23.6
VMungo0251G2763 Vigna mungo HOM05D002564 ORTHO05D003945 2.8e-10 70.1 246 24.0
Prupe.5G058500 Prunus persica HOM05D002564 ORTHO05D003945 3.6e-10 69.7 251 22.7
QL12p009056 Quercus lobata HOM05D002564 ORTHO05D003945 3.6e-10 69.7 221 25.3
SGA_v2.0_scaffold6G03164 Striga asiatica HOM05D002564 ORTHO05D003945 3.6e-10 69.7 232 24.6
ClCG09G012790 Citrullus lanatus HOM05D002564 ORTHO05D003945 4.7e-10 69.3 245 22.9
Lalb_Chr16g0379371 Lupinus albus HOM05D002564 ORTHO05D003945 4.7e-10 69.3 246 24.4
Peaxi162Scf00446g00018 Petunia axillaris HOM05D002564 ORTHO05D003945 4.7e-10 69.3 230 25.2
Actinidia25904 Actinidia chinensis HOM05D002564 ORTHO05D003945 6.1e-10 68.9 235 26.0
unitig_22.g5495 Utricularia gibba HOM05D002564 ORTHO05D003945 6.1e-10 68.9 240 25.8
BraA02t08100Z Brassica rapa HOM05D002564 ORTHO05D003945 8.0e-10 68.6 246 24.0
CDE12G0326 Ceratophyllum demersum HOM05D002564 ORTHO05D003945 8.0e-10 68.6 229 24.5
Gohir.A12G213700 Gossypium hirsutum HOM05D002564 ORTHO05D003945 8.0e-10 68.6 225 22.7
Sp2g11930 Schrenkiella parvula HOM05D002564 ORTHO05D003945 8.0e-10 68.6 237 23.2
CiPaw.11G069700 Carya illinoinensis HOM05D002564 ORTHO05D003945 1.0e-09 68.2 246 23.6
CiPaw.12G047300 Carya illinoinensis HOM05D002564 ORTHO05D003945 1.0e-09 68.2 245 22.9
Duzib068G0289 Durio zibethinus HOM05D002564 ORTHO05D003945 1.4e-09 67.8 248 24.2
Lalb_Chr09g0324201 Lupinus albus HOM05D002564 ORTHO05D003945 1.4e-09 67.8 243 24.7
TPR.G31430 Trifolium pratense HOM05D002564 ORTHO05D003945 1.8e-09 67.4 225 24.0
Eucgr.E00365 Eucalyptus grandis HOM05D002564 ORTHO05D003945 2.3e-09 67.0 236 23.3
Cfa012672 Carpinus fangiana HOM05D002564 ORTHO05D003945 3.0e-09 66.6 242 24.8
Psat2g176040 Pisum sativum HOM05D002564 ORTHO05D003945 3.0e-09 66.6 225 24.9
arahy.Tifrunner.gnm1.ann1.QND09G Arachis hypogaea HOM05D002564 ORTHO05D003945 4.0e-09 66.2 249 22.9
Hund11323 Selenicereus undatus HOM05D002564 ORTHO05D003945 4.0e-09 66.2 227 23.8
Atru.chr9.1224 Acer truncatum HOM05D002564 ORTHO05D003945 1.5e-08 64.3 220 23.6
CAN.G1497.2 Capsicum annuum HOM05D002564 ORTHO05D011154 1.5e-08 64.3 157 30.6
ATR0684G045 Amborella trichopoda HOM05D002564 ORTHO05D003945 2.0e-08 63.9 235 24.7
arahy.Tifrunner.gnm1.ann1.0MYH4H Arachis hypogaea HOM05D002564 ORTHO05D003945 2.0e-08 63.9 248 22.2
PGSC0003DMG400045632 Solanum tuberosum HOM05D002564 ORTHO05D011154 2.0e-08 63.9 72 37.5
Ca_24608_v3 Cicer arietinum L. HOM05D002564 ORTHO05D003945 2.6e-08 63.5 225 23.6
Lj8A275T73 Lonicera japonica HOM05D002564 ORTHO05D003945 3.4e-08 63.2 158 31.0
CAN.G761.18 Capsicum annuum HOM05D002564 ORTHO05D003945 4.4e-08 62.8 230 24.8
Oeu037378.2 Olea europaea HOM05D002564 ORTHO05D003945 5.7e-08 62.4 197 26.4
vmacro00044 Vaccinium macrocarpon HOM05D002564 ORTHO05D003945 5.7e-08 62.4 201 26.9
Ah.07g199070 Amaranthus hybridus HOM05D002564 ORTHO05D003945 7.5e-08 62.0 237 23.6
Lj4g0000920 Lotus japonicus HOM05D002564 ORTHO05D003945 9.8e-08 61.6 229 22.3
PGSC0003DMG400026250 Solanum tuberosum HOM05D002564 ORTHO05D003945 1.3e-07 61.2 229 24.5
Medtr5g013340 Medicago truncatula HOM05D002564 ORTHO05D003945 2.2e-07 60.5 240 22.9
Nitab4.5_0007628g0040 Nicotiana tabacum HOM05D002564 ORTHO05D003945 2.8e-07 60.1 165 30.3
Solyc01g090020.3 Solanum lycopersicum HOM05D002564 ORTHO05D011154 2.8e-07 60.1 81 45.7
PGSC0003DMG400028015 Solanum tuberosum HOM05D002564 ORTHO05D011154 3.7e-07 59.7 59 44.1
FAN13G0033 Fragaria x ananassa HOM05D002564 ORTHO05D003945 4.9e-07 59.3 212 23.1
Sopen08g026490 Solanum pennellii HOM05D002564 ORTHO05D003945 4.9e-07 59.3 229 23.6
CDE04G2711 Ceratophyllum demersum HOM05D002564 ORTHO05D003945 8.3e-07 58.5 248 23.8
Nn6g33792 Nelumbo nucifera HOM05D002564 ORTHO05D003945 8.3e-07 58.5 131 29.0
CSS0038540 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D112551 1.1e-06 58.2 205 26.8
CSS0039868 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D112616 1.8e-06 57.4 205 26.8
CSS0031131 Camellia sinensis var. sinensis HOM05D002564 ORTHO05D003945 5.4e-06 55.8 204 23.5
PGSC0003DMG400046680 Solanum tuberosum HOM05D002564 ORTHO05D011154 7.0e-06 55.5 67 43.3


User provided reference genes

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