Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g088490.3 Solanum lycopersicum HOM05D007320 ORTHO05D009290 3.5e-186 654.8 334 100.0
Sopen01g035350 Solanum pennellii HOM05D007320 ORTHO05D009290 4.9e-180 634.4 334 97.0
PGSC0003DMG400001712 Solanum tuberosum HOM05D007320 ORTHO05D009290 4.7e-175 617.8 334 94.0
CAN.G756.7 Capsicum annuum HOM05D007320 ORTHO05D009290 1.7e-153 546.2 335 85.4
Nitab4.5_0008210g0010 Nicotiana tabacum HOM05D007320 ORTHO05D009290 9.0e-142 507.3 328 79.0
Nitab4.5_0001895g0020 Nicotiana tabacum HOM05D007320 ORTHO05D009290 6.5e-140 501.1 311 81.0
Peaxi162Scf00745g00038 Petunia axillaris HOM05D007320 ORTHO05D009290 2.9e-124 449.1 334 71.3
Atru.chr6.2840 Acer truncatum HOM05D007320 ORTHO05D009290 2.0e-112 409.8 327 62.4
Cc05_g07980 Coffea canephora HOM05D007320 ORTHO05D009290 1.7e-108 396.7 319 63.0
MSTRG.20317 Avicennia marina HOM05D007320 ORTHO05D009290 3.8e-108 395.6 316 62.3
TWI59G0750 Tripterygium wilfordii HOM05D007320 ORTHO05D009290 3.2e-107 392.5 323 61.3
Actinidia11122 Actinidia chinensis HOM05D007320 ORTHO05D009290 8.0e-106 387.9 316 61.4
Glyma.12G208100 Glycine max HOM05D007320 ORTHO05D009290 8.0e-106 387.9 323 59.8
CiPaw.04G130300 Carya illinoinensis HOM05D007320 ORTHO05D009290 2.3e-105 386.3 327 61.8
Ca_01474_v3 Cicer arietinum L. HOM05D007320 ORTHO05D009290 2.3e-105 386.3 323 60.1
Ciclev10017507m.g Citrus clementina HOM05D007320 ORTHO05D009290 4.0e-105 385.6 317 58.4
Oeu000571.1 Olea europaea HOM05D007320 ORTHO05D009290 2.8e-103 379.4 342 59.4
Manes.13G139600 Manihot esculenta HOM05D007320 ORTHO05D009290 1.8e-102 376.7 335 57.3
SalBow8G4737 Salvia bowleyana HOM05D007320 ORTHO05D009290 5.3e-102 375.2 317 58.0
Dinv15897 Davidia involucrata HOM05D007320 ORTHO05D009290 1.2e-101 374.0 317 60.3
Migut.L01118 Erythranthe guttata HOM05D007320 ORTHO05D009290 3.5e-101 372.5 330 58.5
Lalb_Chr25g0279081 Lupinus albus HOM05D007320 ORTHO05D009290 3.5e-101 372.5 317 57.1
Lj1P690T28 Lonicera japonica HOM05D007320 ORTHO05D009290 1.0e-100 370.9 342 56.4
Medtr2g090885 Medicago truncatula HOM05D007320 ORTHO05D009290 1.0e-100 370.9 323 57.3
Phvul.005G098950 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 2.9e-100 369.4 317 59.0
SalBow8G5340 Salvia bowleyana HOM05D007320 ORTHO05D009290 3.8e-100 369.0 317 57.7
VMungo1080G0443 Vigna mungo HOM05D007320 ORTHO05D009290 3.8e-100 369.0 318 58.8
Migut.C00284 Erythranthe guttata HOM05D007320 ORTHO05D009290 5.0e-100 368.6 326 58.3
GSVIVG01020656001 Vitis vinifera HOM05D007320 ORTHO05D009290 5.0e-100 368.6 317 60.6
Cfa014690 Carpinus fangiana HOM05D007320 ORTHO05D009290 1.1e-99 367.5 316 60.4
Cpa.g.sc209.6 Carica papaya HOM05D007320 ORTHO05D009290 1.2e-98 364.0 311 59.8
SGA_v2.0_scaffold313G48283 Striga asiatica HOM05D007320 ORTHO05D009290 2.1e-98 363.2 320 57.2
Lj3g0010689 Lotus japonicus HOM05D007320 ORTHO05D009290 3.6e-98 362.5 317 58.0
Nn3g20750 Nelumbo nucifera HOM05D007320 ORTHO05D009290 1.0e-97 360.9 342 56.4
Haze_13306 Corylus avellana HOM05D007320 ORTHO05D009290 3.0e-97 359.4 313 59.4
Hund07849 Selenicereus undatus HOM05D007320 ORTHO05D009290 1.2e-96 357.5 319 55.5
ECA234G2345 Erigeron canadensis HOM05D007320 ORTHO05D009290 3.4e-96 355.9 334 55.1
Migut.D01592 Erythranthe guttata HOM05D007320 ORTHO05D009290 5.7e-96 355.1 330 56.7
HanXRQChr17g0565321 Helianthus annuus HOM05D007320 ORTHO05D009290 5.7e-96 355.1 318 56.0
Rhsim06G0135200 Rhododendron simsii HOM05D007320 ORTHO05D009290 4.8e-95 352.1 317 56.8
vmacro12358 Vaccinium macrocarpon HOM05D007320 ORTHO05D009290 1.1e-94 350.9 318 56.0
ClCG02G009070 Citrullus lanatus HOM05D007320 ORTHO05D009290 2.4e-94 349.7 315 54.3
RcHm_v2.0_Chr0c20g0500221 Rosa chinensis HOM05D007320 ORTHO05D009290 5.4e-94 348.6 339 56.0
Prupe.3G125800 Prunus persica HOM05D007320 ORTHO05D009290 1.2e-93 347.4 317 58.0
Hma1.2p1_0002F.1_g002500 Hydrangea macrophylla HOM05D007320 ORTHO05D009290 1.6e-93 347.1 312 58.7
Gohir.A05G253000 Gossypium hirsutum HOM05D007320 ORTHO05D009290 2.0e-93 346.7 337 53.7
CSS0012636 Camellia sinensis var. sinensis HOM05D007320 ORTHO05D009290 2.2e-92 343.2 317 56.8
Dinv19981 Davidia involucrata HOM05D007320 ORTHO05D009290 2.9e-92 342.8 298 59.4
FvH4_7g08410 Fragaria vesca HOM05D007320 ORTHO05D009290 2.9e-92 342.8 317 56.8
FAN10G1335 Fragaria x ananassa HOM05D007320 ORTHO05D009290 3.8e-92 342.4 323 56.7
Gohir.D05G254900 Gossypium hirsutum HOM05D007320 ORTHO05D009290 3.8e-92 342.4 337 52.8
Gorai.009G266400 Gossypium raimondii HOM05D007320 ORTHO05D009290 3.8e-92 342.4 337 52.8
MD09G1241100 Malus domestica HOM05D007320 ORTHO05D009290 6.5e-92 341.7 341 54.8
Psat5g275040 Pisum sativum HOM05D007320 ORTHO05D009290 8.5e-92 341.3 332 54.2
TPR.G6440 Trifolium pratense HOM05D007320 ORTHO05D009290 8.5e-92 341.3 316 56.0
FAN10G4046 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.1e-91 340.9 323 56.7
FAN03G0990 Fragaria x ananassa HOM05D007320 ORTHO05D009290 1.2e-90 337.4 321 55.8
unitig_62.g23164 Utricularia gibba HOM05D007320 ORTHO05D009290 2.7e-90 336.3 335 51.0
CsaV3_2G004500 Cucumis sativus L. HOM05D007320 ORTHO05D009290 1.0e-89 334.3 317 52.1
COL.COLO4_26851 Corchorus olitorius HOM05D007320 ORTHO05D009290 2.0e-88 330.1 317 55.2
Aa31LG1G7290 Aethionema arabicum HOM05D007320 ORTHO05D009290 3.4e-88 329.3 323 53.9
DCAR_013053 Daucus carota HOM05D007320 ORTHO05D009290 9.8e-88 327.8 321 53.3
Sabra13G0103100 Salix brachista HOM05D007320 ORTHO05D009290 9.8e-88 327.8 321 53.0
TAR627G0001 Trochodendron aralioides HOM05D007320 ORTHO05D009290 9.8e-88 327.8 323 55.4
Sed0016711 Sechium edule HOM05D007320 ORTHO05D009290 1.7e-87 327.0 317 53.3
THA.LOC104800856 Tarenaya hassleriana HOM05D007320 ORTHO05D009290 2.8e-87 326.2 317 54.9
Lsat_1_v5_gn_4_28301 Lactuca sativa HOM05D007320 ORTHO05D009290 3.7e-87 325.9 291 54.0
CANSAT64G2476 Cannabis sativa HOM05D007320 ORTHO05D009290 1.1e-86 324.3 332 52.7
Thecc.08G174300 Theobroma cacao HOM05D007320 ORTHO05D009290 2.7e-85 319.7 317 54.9
Thhalv10008110m.g Eutrema salsugineum HOM05D007320 ORTHO05D009290 2.3e-84 316.6 323 52.9
Potri.013G124100 Populus trichocarpa HOM05D007320 ORTHO05D009290 2.3e-84 316.6 321 51.4
MBI06_g25716_MAGBIO Magnolia biondii HOM05D007320 ORTHO05D009290 3.8e-84 315.8 322 53.7
AT1G06270 Arabidopsis thaliana HOM05D007320 ORTHO05D009290 1.9e-83 313.5 323 52.3
Sp1g05080 Schrenkiella parvula HOM05D007320 ORTHO05D009290 3.3e-83 312.8 323 52.3
AL1G16280 Arabidopsis lyrata HOM05D007320 ORTHO05D009290 9.5e-83 311.2 323 52.3
CARHR005830 Cardamine hirsuta HOM05D007320 ORTHO05D009290 1.6e-82 310.5 323 52.0
BcaB02g06809 Brassica carinata HOM05D007320 ORTHO05D009290 3.6e-82 309.3 323 51.7
Carub.0001s0564 Capsella rubella HOM05D007320 ORTHO05D009290 4.7e-82 308.9 323 51.4
AUR62035379 Chenopodium quinoa HOM05D007320 ORTHO05D009290 2.6e-80 303.1 315 51.4
C05p04580 Brassica napus HOM05D007320 ORTHO05D009290 4.4e-80 302.4 318 51.6
Eucgr.F01954 Eucalyptus grandis HOM05D007320 ORTHO05D009290 9.8e-80 301.2 334 49.4
A10p04990 Brassica napus HOM05D007320 ORTHO05D009290 1.7e-79 300.4 318 51.3
BolC5t29229H Brassica oleracea HOM05D007320 ORTHO05D009290 1.7e-79 300.4 318 51.6
BraA10t42760Z Brassica rapa HOM05D007320 ORTHO05D009290 1.7e-79 300.4 318 51.3
BcaC05g24288 Brassica carinata HOM05D007320 ORTHO05D009290 2.2e-79 300.1 318 51.3
EL10Ac2g02568 Beta vulgaris HOM05D007320 ORTHO05D009290 6.4e-79 298.5 315 51.7
Sc07g0005270 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.8e-78 297.0 322 49.7
TPR.G5736 Trifolium pratense HOM05D007320 ORTHO05D009290 7.0e-78 295.0 270 55.9
TPR.G34643 Trifolium pratense HOM05D007320 ORTHO05D009290 8.6e-68 261.5 195 65.1
PGR083G2305 Punica granatum HOM05D007320 ORTHO05D009290 8.9e-65 251.5 317 42.6
SHI10502 Sapria himalayana HOM05D007320 ORTHO05D009290 9.8e-64 248.1 317 44.8
AUR62024073 Chenopodium quinoa HOM05D007320 ORTHO05D009290 2.3e-60 236.9 231 53.2
MELO3C004341.2 Cucumis melo HOM05D007320 ORTHO05D009290 7.1e-54 215.3 216 49.1
PGSC0003DMG401001710 Solanum tuberosum HOM05D007320 ORTHO05D009290 1.2e-53 214.5 113 96.5
Phvul.005G098533 Phaseolus vulgaris HOM05D007320 ORTHO05D009290 9.6e-51 204.9 158 65.2
arahy.Tifrunner.gnm1.ann1.CSM94Q Arachis hypogaea HOM05D007320 ORTHO05D009290 1.6e-45 187.6 162 54.9
arahy.Tifrunner.gnm1.ann1.66V1NK Arachis hypogaea HOM05D007320 ORTHO05D009290 1.8e-41 174.1 163 51.5
Cpa.g.sc209.4 Carica papaya HOM05D007320 ORTHO05D009290 2.5e-35 153.7 154 53.9
SalBow7G0970 Salvia bowleyana HOM05D000555 ORTHO05D000646 1.8e-33 147.5 134 51.5
Dinv15900 Davidia involucrata HOM05D007320 ORTHO05D009290 6.0e-29 132.5 183 44.3
Sc21g0003330 Simmondsia chinensis HOM05D007320 ORTHO05D009290 1.3e-28 131.3 171 45.6
Sc21g0003340 Simmondsia chinensis HOM05D007320 ORTHO05D009290 3.1e-25 120.2 99 59.6
arahy.Tifrunner.gnm1.ann1.5PR57S Arachis hypogaea HOM05D007320 ORTHO05D009290 1.1e-17 95.1 113 46.9
Peaxi162Scf00102g01049 Petunia axillaris HOM05D007320 ORTHO05D009290 1.8e-17 94.4 81 66.7
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 7.4e-11 72.4 135 31.9
arahy.Tifrunner.gnm1.ann1.62512W Arachis hypogaea HOM05D004271 ORTHO05D006011 1.6e-10 71.2 193 25.4
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 6.3e-10 69.3 174 29.9
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 6.9e-09 65.9 189 27.0
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 2.0e-08 64.3 171 26.9
MELO3C021360.2 Cucumis melo HOM05D007320 ORTHO05D009290 5.9e-08 62.8 91 45.1
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 1.3e-07 61.6 255 25.9
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 1.7e-07 61.2 200 25.5
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 3.8e-07 60.1 192 24.5
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 6.5e-07 59.3 135 29.6
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 8.5e-07 58.9 235 23.4
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 8.5e-07 58.9 135 29.6
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 8.5e-07 58.9 135 28.9
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 1.1e-06 58.5 166 27.1
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 1.4e-06 58.2 135 28.9
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 2.5e-06 57.4 133 28.6
MD05G1166500 Malus domestica HOM05D007486 ORTHO05D003673 4.2e-06 56.6 163 25.2
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 4.2e-06 56.6 170 27.6
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 9.4e-06 55.5 158 25.9
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 9.4e-06 55.5 158 25.9
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 9.4e-06 55.5 158 25.9


User provided reference genes

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