Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g088390.3 Solanum lycopersicum HOM05D005798 ORTHO05D007269 3.1e-229 798.1 399 100.0
Sopen01g035220 Solanum pennellii HOM05D005798 ORTHO05D007269 2.5e-223 778.5 399 97.2
PGSC0003DMG400001703 Solanum tuberosum HOM05D005798 ORTHO05D007269 1.3e-219 766.1 399 95.2
CAN.G1480.2 Capsicum annuum HOM05D005798 ORTHO05D007269 4.9e-211 737.6 399 91.0
Nitab4.5_0009219g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 5.4e-202 707.6 399 87.7
Nitab4.5_0013532g0010 Nicotiana tabacum HOM05D005798 ORTHO05D007269 2.7e-201 705.3 399 87.7
Peaxi162Scf01124g00121 Petunia axillaris HOM05D005798 ORTHO05D007269 5.6e-199 697.6 399 86.2
Cc02_g25760 Coffea canephora HOM05D005798 ORTHO05D007269 5.5e-154 548.1 391 69.6
vmacro21093 Vaccinium macrocarpon HOM05D005798 ORTHO05D007269 7.2e-154 547.7 401 66.8
CSS0042045 Camellia sinensis var. sinensis HOM05D005798 ORTHO05D007269 1.6e-153 546.6 400 67.2
QL04p025438 Quercus lobata HOM05D005798 ORTHO05D007269 1.5e-151 540.0 391 68.3
CiPaw.13G020800 Carya illinoinensis HOM05D005798 ORTHO05D007269 1.8e-149 533.1 392 67.1
Atru.chr5.52 Acer truncatum HOM05D005798 ORTHO05D007269 2.2e-147 526.2 393 66.7
MSTRG.20650 Avicennia marina HOM05D005798 ORTHO05D007269 2.5e-146 522.7 391 65.7
Atru.chr5.24 Acer truncatum HOM05D005798 ORTHO05D007269 4.2e-146 521.9 393 66.2
FAN26G0835 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.6e-145 520.0 389 64.3
Prupe.2G112300 Prunus persica HOM05D005798 ORTHO05D007269 2.7e-145 519.2 389 66.1
TWI59G0898 Tripterygium wilfordii HOM05D005798 ORTHO05D007269 6.1e-145 518.1 388 64.7
FvH4_1g25731 Fragaria vesca HOM05D005798 ORTHO05D007269 8.0e-145 517.7 389 64.3
MD02G1227400 Malus domestica HOM05D005798 ORTHO05D007269 8.0e-145 517.7 389 65.8
MD07G1086000 Malus domestica HOM05D005798 ORTHO05D007269 1.8e-144 516.5 389 65.0
Manes.05G060100 Manihot esculenta HOM05D005798 ORTHO05D007269 1.8e-144 516.5 391 65.7
Ciclev10020482m.g Citrus clementina HOM05D005798 ORTHO05D007269 1.5e-143 513.5 388 64.7
FAN23G2651 Fragaria x ananassa HOM05D005798 ORTHO05D007269 1.5e-143 513.5 389 63.5
Potri.001G346900 Populus trichocarpa HOM05D005798 ORTHO05D007269 1.5e-143 513.5 389 65.0
RcHm_v2.0_Chr1g0343251 Rosa chinensis HOM05D005798 ORTHO05D007269 1.5e-143 513.5 389 64.8
Lj1g0019008 Lotus japonicus HOM05D005798 ORTHO05D007269 2.0e-143 513.1 389 62.5
FAN28G0191 Fragaria x ananassa HOM05D005798 ORTHO05D007269 3.3e-143 512.3 389 63.0
Sabra16G0226600 Salix brachista HOM05D005798 ORTHO05D007269 4.4e-143 511.9 399 63.9
Hund17139 Selenicereus undatus HOM05D005798 ORTHO05D007269 7.4e-143 511.1 389 63.2
Gohir.D10G254600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 6.3e-142 508.1 387 64.9
Oeu024375.1 Olea europaea HOM05D005798 ORTHO05D007269 6.3e-142 508.1 374 65.8
Oeu024376.1 Olea europaea HOM05D005798 ORTHO05D007269 6.3e-142 508.1 374 65.8
Glyma.06G310400 Glycine max HOM05D005798 ORTHO05D007269 8.2e-142 507.7 391 61.9
Medtr0103s0100 Medicago truncatula HOM05D005798 ORTHO05D007269 8.2e-142 507.7 390 62.1
Gorai.011G295600 Gossypium raimondii HOM05D005798 ORTHO05D007269 2.4e-141 506.1 387 64.6
THA.LOC104817171 Tarenaya hassleriana HOM05D005798 ORTHO05D007269 3.1e-141 505.8 400 62.0
Lalb_Chr19g0126311 Lupinus albus HOM05D005798 ORTHO05D007269 9.1e-141 504.2 392 63.0
CANSAT21G0894 Cannabis sativa HOM05D005798 ORTHO05D007269 1.6e-140 503.4 389 60.4
Glyma.04G128400 Glycine max HOM05D005798 ORTHO05D007269 1.6e-140 503.4 392 61.7
MELO3C006251.2 Cucumis melo HOM05D005798 ORTHO05D007269 3.5e-140 502.3 397 61.7
arahy.Tifrunner.gnm1.ann1.1MA0KJ Arachis hypogaea HOM05D005798 ORTHO05D007269 4.5e-140 501.9 389 62.7
Phvul.005G016200 Phaseolus vulgaris HOM05D005798 ORTHO05D007269 4.5e-140 501.9 390 62.6
Thecc.10G001400 Theobroma cacao HOM05D005798 ORTHO05D007269 4.5e-140 501.9 389 63.2
PGR004G0434 Punica granatum HOM05D005798 ORTHO05D007269 5.9e-140 501.5 398 61.1
Gohir.A10G242600 Gossypium hirsutum HOM05D005798 ORTHO05D007269 1.3e-139 500.4 387 64.1
VMungo1080G0989 Vigna mungo HOM05D005798 ORTHO05D007269 2.9e-139 499.2 391 62.4
arahy.Tifrunner.gnm1.ann1.6FN2NF Arachis hypogaea HOM05D005798 ORTHO05D007269 5.0e-139 498.4 389 62.5
CsaV3_3G010280 Cucumis sativus L. HOM05D005798 ORTHO05D007269 8.5e-139 497.7 397 61.2
Psat3g172680 Pisum sativum HOM05D005798 ORTHO05D007269 8.5e-139 497.7 390 60.5
Migut.B01472 Erythranthe guttata HOM05D005798 ORTHO05D007269 1.5e-138 496.9 390 63.3
Ca_03850_v3 Cicer arietinum L. HOM05D005798 ORTHO05D007269 1.9e-138 496.5 389 62.0
AUR62027448 Chenopodium quinoa HOM05D005798 ORTHO05D007269 3.2e-138 495.7 389 61.7
Duzib128G1323 Durio zibethinus HOM05D005798 ORTHO05D007269 3.2e-138 495.7 389 62.0
PGR004G1878 Punica granatum HOM05D005798 ORTHO05D007269 3.2e-138 495.7 398 60.6
AUR62031252 Chenopodium quinoa HOM05D005798 ORTHO05D007269 7.2e-138 494.6 389 61.4
ClCG05G002770 Citrullus lanatus HOM05D005798 ORTHO05D007269 7.2e-138 494.6 400 60.5
Eucgr.D01150 Eucalyptus grandis HOM05D005798 ORTHO05D007269 3.0e-136 489.2 400 61.8
Nn2g10726 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.0e-136 489.2 391 62.4
Sc26g0001830 Simmondsia chinensis HOM05D005798 ORTHO05D007269 2.8e-134 482.6 400 58.0
EL10Ac8g19272 Beta vulgaris HOM05D005798 ORTHO05D007269 8.3e-134 481.1 389 59.9
Sed0012756 Sechium edule HOM05D005798 ORTHO05D007269 1.1e-133 480.7 397 59.9
AL4G43620 Arabidopsis lyrata HOM05D005798 ORTHO05D007269 5.4e-133 478.4 393 60.6
Aa31LG1G26140 Aethionema arabicum HOM05D005798 ORTHO05D007269 2.7e-132 476.1 391 59.8
AT2G44580 Arabidopsis thaliana HOM05D005798 ORTHO05D007269 2.2e-131 473.0 395 60.0
Sp4g26670 Schrenkiella parvula HOM05D005798 ORTHO05D007269 3.8e-131 472.2 392 60.5
BcaB02g08835 Brassica carinata HOM05D005798 ORTHO05D007269 5.0e-131 471.9 391 61.1
A05p04740 Brassica napus HOM05D005798 ORTHO05D007269 1.2e-129 467.2 390 59.2
BolC4t22185H Brassica oleracea HOM05D005798 ORTHO05D007269 2.1e-129 466.5 389 59.9
BraA05t19450Z Brassica rapa HOM05D005798 ORTHO05D007269 2.7e-129 466.1 390 59.2
PSO017G1219 Papaver somniferum HOM05D005798 ORTHO05D007269 6.1e-129 464.9 394 58.6
BcaC02g12292 Brassica carinata HOM05D005798 ORTHO05D007269 1.4e-128 463.8 390 58.7
C04p05550 Brassica napus HOM05D005798 ORTHO05D007269 1.4e-128 463.8 390 58.7
PSO782G4885 Papaver somniferum HOM05D005798 ORTHO05D007269 1.8e-128 463.4 394 58.4
Carub.0004s2713 Capsella rubella HOM05D005798 ORTHO05D007269 3.0e-128 462.6 396 59.1
CARHR139800 Cardamine hirsuta HOM05D005798 ORTHO05D007269 8.8e-128 461.1 385 57.9
Lj7C553T5 Lonicera japonica HOM05D005798 ORTHO05D007269 8.8e-128 461.1 399 57.6
HanXRQChr16g0519531 Helianthus annuus HOM05D005798 ORTHO05D007269 1.7e-126 456.8 388 58.2
PSO063G7295 Papaver somniferum HOM05D005798 ORTHO05D007269 3.1e-125 452.6 404 57.2
unitig_52.g17377 Utricularia gibba HOM05D005798 ORTHO05D007269 9.1e-125 451.1 393 56.5
ECA234G4178 Erigeron canadensis HOM05D005798 ORTHO05D007269 1.2e-124 450.7 390 57.7
MBI05_g22048_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 3.3e-122 442.6 391 55.8
Zm00001eb112030 Zea mays HOM05D005798 ORTHO05D007269 6.8e-120 434.9 393 57.3
Os05g0119600 Oryza sativa ssp. japonica HOM05D005798 ORTHO05D007269 8.9e-120 434.5 378 57.1
Ah.14g086050 Amaranthus hybridus HOM05D005798 ORTHO05D007269 1.2e-119 434.1 384 56.8
HPP92_011679 Vanilla planifolia HOM05D005798 ORTHO05D007269 1.2e-119 434.1 404 55.9
Thhalv10001723m.g Eutrema salsugineum HOM05D005798 ORTHO05D007269 3.4e-119 432.6 369 58.8
TPR.G30814 Trifolium pratense HOM05D005798 ORTHO05D007269 1.7e-118 430.3 344 59.6
SEGI_02869 Sequoiadendron giganteum HOM05D005798 ORTHO05D007269 2.3e-112 409.8 394 50.3
Actinidia33294 Actinidia chinensis HOM05D005798 ORTHO05D007269 1.5e-111 407.1 368 57.1
CDE06G2636 Ceratophyllum demersum HOM05D005798 ORTHO05D007269 1.2e-108 397.5 358 55.3
SGA_v2.0_scaffold17G08178 Striga asiatica HOM05D005798 ORTHO05D007269 8.6e-107 391.3 353 55.5
COL.COLO4_19318 Corchorus olitorius HOM05D005798 ORTHO05D007269 1.5e-103 380.6 314 60.5
Rhsim01G0145000 Rhododendron simsii HOM05D005798 ORTHO05D007269 1.4e-101 374.0 390 50.8
Nn1g00612 Nelumbo nucifera HOM05D005798 ORTHO05D007269 3.0e-99 366.3 276 64.1
Dinv43575 Davidia involucrata HOM05D005798 ORTHO05D007269 1.6e-97 360.5 268 67.9
ATR0585G014 Amborella trichopoda HOM05D005798 ORTHO05D007269 1.8e-96 357.1 407 49.4
TAR375G0847 Trochodendron aralioides HOM05D005798 ORTHO05D007269 7.3e-90 335.1 255 65.9
Pp3c5_22720 Physcomitrium patens HOM05D005798 ORTHO05D007269 8.9e-88 328.2 389 42.4
Cpa.g.sc3387.1 Carica papaya HOM05D005798 ORTHO05D007269 3.2e-85 319.7 233 63.1
AagrBONN_evm.TU.Sc2ySwM_344.2100 Anthoceros agrestis HOM05D005798 ORTHO05D007269 1.8e-80 303.9 379 42.5
GSVIVG01018417001 Vitis vinifera HOM05D005798 ORTHO05D007269 1.1e-74 284.6 189 70.9
Mapoly0001s0452 Marchantia polymorpha HOM05D005798 ORTHO05D007269 1.9e-74 283.9 398 38.7
Peaxi162Scf00417g00029 Petunia axillaris HOM05D005798 ORTHO05D007269 3.7e-65 253.1 233 60.1
Lsat_1_v5_gn_4_46040 Lactuca sativa HOM05D005798 ORTHO05D007269 2.0e-63 247.3 193 62.2
CAN.G74.39 Capsicum annuum HOM05D005798 ORTHO05D007269 2.6e-63 246.9 152 82.9
Actinidia21608 Actinidia chinensis HOM05D005798 ORTHO05D007269 5.8e-63 245.7 162 69.8
Nn3g19112 Nelumbo nucifera HOM05D005798 ORTHO05D007269 6.0e-60 235.7 242 50.0
Nn1g07358 Nelumbo nucifera HOM05D005798 ORTHO05D007269 1.3e-59 234.6 191 63.9
Haze_02923 Corylus avellana HOM05D005798 ORTHO05D007269 2.6e-55 220.3 187 63.1
CAN.G195.32 Capsicum annuum HOM05D005798 ORTHO05D007269 5.9e-55 219.2 169 67.5
GSVIVG01018418001 Vitis vinifera HOM05D005798 ORTHO05D007269 4.3e-50 203.0 142 70.4
Nn3g19416 Nelumbo nucifera HOM05D005798 ORTHO05D007269 6.3e-49 199.1 160 59.4
Prupe.2G112400 Prunus persica HOM05D005798 ORTHO05D007269 1.1e-45 188.3 201 51.2
Prupe.2G112500 Prunus persica HOM05D005798 ORTHO05D007269 1.4e-43 181.4 140 65.0
Atru.chr5.133 Acer truncatum HOM05D005798 ORTHO05D007269 6.9e-40 169.1 180 52.8
CBR_g39622 Chara braunii HOM05D000017 ORTHO05D000013 1.2e-39 168.3 427 28.8
Dinv43574 Davidia involucrata HOM05D005798 ORTHO05D007269 3.4e-39 166.8 110 70.9
Nn1g07357 Nelumbo nucifera HOM05D005798 ORTHO05D007269 5.9e-39 166.0 135 56.3
Cre16.g684155 Chlamydomonas reinhardtii HOM05D005798 ORTHO05D007269 7.7e-39 165.6 383 31.3
CAN.G74.38 Capsicum annuum HOM05D005798 ORTHO05D007269 4.7e-36 156.4 93 88.2
HanXRQChr12g0366931 Helianthus annuus HOM05D005798 ORTHO05D007269 2.0e-34 151.0 237 37.6
Atru.chr5.134 Acer truncatum HOM05D005798 ORTHO05D007269 1.2e-31 141.7 93 72.0
PRCOL_00005399 Prasinoderma coloniale HOM05D005798 ORTHO05D007269 1.6e-31 141.4 378 31.2
Nn3g19415 Nelumbo nucifera HOM05D005798 ORTHO05D007269 2.2e-30 137.5 86 74.4
MCO12G177 Micromonas commoda HOM05D005798 ORTHO05D007269 1.0e-22 112.1 489 26.2
CAN.G195.33 Capsicum annuum HOM05D005798 ORTHO05D007269 1.6e-20 104.8 72 77.8
EL10Ac6g13432 Beta vulgaris HOM05D005798 ORTHO05D007269 6.1e-20 102.8 85 55.3
HPP92_011700 Vanilla planifolia HOM05D005798 ORTHO05D007269 7.5e-18 95.9 57 71.9
HanXRQChr07g0198081 Helianthus annuus HOM05D005798 ORTHO05D007269 2.8e-17 94.0 196 31.6
MBI14_g08084_MAGBIO Magnolia biondii HOM05D005798 ORTHO05D007269 4.0e-11 73.6 83 44.6
TAR375G0441 Trochodendron aralioides HOM05D005798 ORTHO05D007269 1.3e-09 68.6 54 59.3
HanXRQChr11g0349311 Helianthus annuus HOM05D000428 ORTHO05D011602 2.2e-09 67.8 100 44.0


User provided reference genes

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