Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g088320.2 Solanum lycopersicum HOM05D000730 ORTHO05D000578 3.7e-24 114.0 55 100.0
PGSC0003DMG401006827 Solanum tuberosum HOM05D000730 ORTHO05D000578 2.8e-16 87.8 80 60.0
Solyc01g096540.4 Solanum lycopersicum HOM05D000730 ORTHO05D000578 8.2e-16 86.3 80 60.0
Sopen01g040270 Solanum pennellii HOM05D000730 ORTHO05D000578 8.2e-16 86.3 80 60.0
Rhsim07G0068600 Rhododendron simsii HOM05D000730 ORTHO05D000578 1.8e-15 85.1 80 58.8
vmacro07437 Vaccinium macrocarpon HOM05D000730 ORTHO05D000578 1.8e-15 85.1 80 58.8
CAN.G134.13 Capsicum annuum HOM05D000730 ORTHO05D000578 2.4e-15 84.7 80 58.8
Cpa.g.sc169.47 Carica papaya HOM05D000730 ORTHO05D000578 2.4e-15 84.7 80 58.8
DCAR_006604 Daucus carota HOM05D000730 ORTHO05D000578 2.4e-15 84.7 80 58.8
Duzib128G1742 Durio zibethinus HOM05D000730 ORTHO05D000578 2.4e-15 84.7 80 58.8
Gohir.A05G283200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 2.4e-15 84.7 80 57.5
Sc10g0004540 Simmondsia chinensis HOM05D000730 ORTHO05D000578 2.4e-15 84.7 80 58.8
COL.COLO4_20721 Corchorus olitorius HOM05D000730 ORTHO05D000578 3.1e-15 84.3 80 57.5
Duzib114G0880 Durio zibethinus HOM05D000730 ORTHO05D000578 3.1e-15 84.3 80 57.5
Gohir.D05G284200 Gossypium hirsutum HOM05D000730 ORTHO05D000578 3.1e-15 84.3 80 57.5
Gorai.009G298800 Gossypium raimondii HOM05D000730 ORTHO05D000578 3.1e-15 84.3 80 57.5
Manes.04G156900 Manihot esculenta HOM05D000730 ORTHO05D000578 3.1e-15 84.3 80 57.5
Peaxi162Scf00082g00018 Petunia axillaris HOM05D000730 ORTHO05D000578 3.1e-15 84.3 80 57.5
Thecc.10G145500 Theobroma cacao HOM05D000730 ORTHO05D000578 3.1e-15 84.3 80 57.5
Cc00_g07550 Coffea canephora HOM05D000730 ORTHO05D000578 4.0e-15 84.0 79 59.5
MD07G1046600 Malus domestica HOM05D000730 ORTHO05D000578 4.0e-15 84.0 79 59.5
Nitab4.5_0005420g0020 Nicotiana tabacum HOM05D000730 ORTHO05D000578 4.0e-15 84.0 79 59.5
RcHm_v2.0_Chr1g0326411 Rosa chinensis HOM05D000730 ORTHO05D000578 4.0e-15 84.0 79 59.5
GSVIVG01036645001 Vitis vinifera HOM05D000730 ORTHO05D000578 4.0e-15 84.0 80 58.8
Atru.chr12.1287 Acer truncatum HOM05D000730 ORTHO05D000578 5.3e-15 83.6 80 57.5
Ciclev10003518m.g Citrus clementina HOM05D000730 ORTHO05D000578 5.3e-15 83.6 80 57.5
Eucgr.J00067 Eucalyptus grandis HOM05D000730 ORTHO05D000578 5.3e-15 83.6 80 56.2
PGR044G0565 Punica granatum HOM05D000730 ORTHO05D000578 5.3e-15 83.6 80 57.5
TWI60G0879 Tripterygium wilfordii HOM05D000730 ORTHO05D000578 5.3e-15 83.6 80 57.5
Dinv44710 Davidia involucrata HOM05D000730 ORTHO05D000578 6.9e-15 83.2 80 57.5
PSO339G1614 Papaver somniferum HOM05D000730 ORTHO05D000578 6.9e-15 83.2 80 57.5
PSO384G0089 Papaver somniferum HOM05D000730 ORTHO05D000578 6.9e-15 83.2 80 57.5
Actinidia06224 Actinidia chinensis HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
CANSAT56G2780 Cannabis sativa HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
ECA236G3986 Erigeron canadensis HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
FvH4_7g03630 Fragaria vesca HOM05D000730 ORTHO05D000578 9.0e-15 82.8 79 58.2
FAN03G3014 Fragaria x ananassa HOM05D000730 ORTHO05D000578 9.0e-15 82.8 79 58.2
FAN06G3967 Fragaria x ananassa HOM05D000730 ORTHO05D000578 9.0e-15 82.8 79 58.2
Glyma.15G230600 Glycine max HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
HanXRQChr04g0119551 Helianthus annuus HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
Medtr8g040190 Medicago truncatula HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
Nitab4.5_0002838g0080 Nicotiana tabacum HOM05D000730 ORTHO05D000578 9.0e-15 82.8 79 58.2
Phvul.011G201400 Phaseolus vulgaris HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
Psat4g145160 Pisum sativum HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
TPR.G8523 Trifolium pratense HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
VMungo1127G0979 Vigna mungo HOM05D000730 ORTHO05D000578 9.0e-15 82.8 80 57.5
arahy.Tifrunner.gnm1.ann1.8I68MQ Arachis hypogaea HOM05D000730 ORTHO05D000578 1.2e-14 82.4 80 56.2
arahy.Tifrunner.gnm1.ann1.H567TY Arachis hypogaea HOM05D000730 ORTHO05D000578 1.2e-14 82.4 80 56.2
CSS0025631 Camellia sinensis var. sinensis HOM05D000730 ORTHO05D000578 1.2e-14 82.4 80 57.5
Nn7g36786 Nelumbo nucifera HOM05D000730 ORTHO05D000578 1.2e-14 82.4 80 57.5
FAN10G2667 Fragaria x ananassa HOM05D000730 ORTHO05D000578 1.5e-14 82.0 79 57.0
Lalb_Chr19g0132961 Lupinus albus HOM05D000730 ORTHO05D000578 1.5e-14 82.0 79 58.2
SalBow5G1057 Salvia bowleyana HOM05D000730 ORTHO05D000578 1.5e-14 82.0 80 56.2
Aa31sc24G200 Aethionema arabicum HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
BcaB05g25310 Brassica carinata HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
BcaC06g32528 Brassica carinata HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
BcaNung04208 Brassica carinata HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
A10p28770 Brassica napus HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
C09p69110 Brassica napus HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
BolC9t59655H Brassica oleracea HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
BraA10t44924Z Brassica rapa HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
Carub.0006s0590 Capsella rubella HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
CiPaw.13G015400 Carya illinoinensis HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
Haze_03002 Corylus avellana HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
Thhalv10012512m.g Eutrema salsugineum HOM05D000730 ORTHO05D000578 2.0e-14 81.6 78 59.0
Glyma.13G192900 Glycine max HOM05D000730 ORTHO05D000578 2.0e-14 81.6 80 57.5
Prupe.2G042100 Prunus persica HOM05D000730 ORTHO05D000578 2.0e-14 81.6 79 57.0
AL6G17130 Arabidopsis lyrata HOM05D000730 ORTHO05D000578 2.6e-14 81.3 78 59.0
AT5G06970 Arabidopsis thaliana HOM05D000730 ORTHO05D000578 2.6e-14 81.3 78 59.0
Ca_23976_v3 Cicer arietinum L. HOM05D000730 ORTHO05D000578 2.6e-14 81.3 80 56.2
Migut.B01242 Erythranthe guttata HOM05D000730 ORTHO05D000578 2.6e-14 81.3 80 56.2
Lj3g0012169 Lotus japonicus HOM05D000730 ORTHO05D000578 3.4e-14 80.9 80 56.2
Lj9A659T52 Lonicera japonica HOM05D000730 ORTHO05D000578 4.5e-14 80.5 80 55.0
Sp6g35900 Schrenkiella parvula HOM05D000730 ORTHO05D000578 5.8e-14 80.1 78 57.7
CARHR206170 Cardamine hirsuta HOM05D000730 ORTHO05D000578 7.6e-14 79.7 78 57.7
Lsat_1_v5_gn_3_52940 Lactuca sativa HOM05D000730 ORTHO05D000578 7.6e-14 79.7 78 57.7
Lsat_1_v5_gn_3_5660 Lactuca sativa HOM05D000730 ORTHO05D000578 7.6e-14 79.7 78 57.7
Lsat_1_v5_gn_4_48181 Lactuca sativa HOM05D004809 ORTHO05D006732 7.6e-14 79.7 78 57.7
Lsat_1_v5_gn_7_31081 Lactuca sativa HOM05D000730 ORTHO05D000578 7.6e-14 79.7 78 57.7
MD02G1278500 Malus domestica HOM05D000730 ORTHO05D000578 1.0e-13 79.3 79 57.0
Oeu064135.2 Olea europaea HOM05D000730 ORTHO05D000578 1.0e-13 79.3 79 55.7
Lalb_Chr01g0007381 Lupinus albus HOM05D000730 ORTHO05D000578 1.3e-13 79.0 80 55.0
ClCG05G026970 Citrullus lanatus HOM05D000730 ORTHO05D000578 1.7e-13 78.6 78 56.4
CsaV3_5G036910 Cucumis sativus L. HOM05D000730 ORTHO05D000578 1.7e-13 78.6 78 56.4
Sed0013589 Sechium edule HOM05D000730 ORTHO05D000578 1.7e-13 78.6 78 56.4
Hma1.2p1_0121F.1_g057430 Hydrangea macrophylla HOM05D000730 ORTHO05D000578 2.2e-13 78.2 80 55.0
AUR62031742 Chenopodium quinoa HOM05D000730 ORTHO05D000578 3.8e-13 77.4 78 56.4
MELO3C012490.2 Cucumis melo HOM05D000730 ORTHO05D000578 3.8e-13 77.4 78 55.1
THA.LOC104799323 Tarenaya hassleriana HOM05D000730 ORTHO05D000578 3.8e-13 77.4 77 57.1
Potri.001G030100 Populus trichocarpa HOM05D000730 ORTHO05D000578 5.0e-13 77.0 79 57.0
EL10Ac2g02767 Beta vulgaris HOM05D000730 ORTHO05D000578 6.5e-13 76.6 78 56.4
Lalb_Chr03g0032161 Lupinus albus HOM05D000730 ORTHO05D000578 6.5e-13 76.6 80 55.0
MBI19_g36134_MAGBIO Magnolia biondii HOM05D000730 ORTHO05D000578 6.5e-13 76.6 78 56.4
unitig_749.g14334 Utricularia gibba HOM05D000730 ORTHO05D000578 6.5e-13 76.6 78 53.8
Sopen02g020820 Solanum pennellii HOM05D000730 ORTHO05D026154 8.4e-13 76.3 37 97.3
Aqoxy2G00416 Aquilegia oxysepala HOM05D000730 ORTHO05D000578 1.4e-12 75.5 80 52.5
Lsat_1_v5_gn_9_14041 Lactuca sativa HOM05D004809 ORTHO05D006732 1.9e-12 75.1 78 56.4
SGA_v2.0_scaffold124G33604 Striga asiatica HOM05D000730 ORTHO05D000578 2.5e-12 74.7 80 52.5
Zm00001eb285140 Zea mays HOM05D000730 ORTHO05D000578 2.5e-12 74.7 78 52.6
HPP92_021195 Vanilla planifolia HOM05D000730 ORTHO05D000578 5.5e-12 73.6 78 53.8
Sabra01G0021600 Salix brachista HOM05D000730 ORTHO05D000578 7.1e-12 73.2 79 55.7
Lsat_1_v5_gn_9_93581 Lactuca sativa HOM05D000730 ORTHO05D000578 9.3e-12 72.8 78 55.1
ATR1096G139 Amborella trichopoda HOM05D000730 ORTHO05D000578 6.1e-11 70.1 80 51.2
Hund15746 Selenicereus undatus HOM05D000730 ORTHO05D000578 6.1e-11 70.1 79 50.6
BcaB05g25314 Brassica carinata HOM05D000730 ORTHO05D000578 2.5e-09 64.7 44 68.2
Mapoly0125s0045 Marchantia polymorpha HOM05D000730 ORTHO05D000578 4.3e-09 63.9 80 46.2
Pp3c7_24310 Physcomitrium patens HOM05D000730 ORTHO05D000578 7.4e-09 63.2 78 47.4
Ah.10g030070 Amaranthus hybridus HOM05D000730 ORTHO05D000578 6.3e-08 60.1 69 53.6
SMO116G0331 Selaginella moellendorffii HOM05D000730 ORTHO05D000578 1.1e-07 59.3 80 42.5
AagrBONN_evm.TU.Sc2ySwM_344.4217 Anthoceros agrestis HOM05D000730 ORTHO05D000578 1.4e-07 58.9 36 69.4
CDE09G0864 Ceratophyllum demersum HOM05D000730 ORTHO05D000578 2.0e-06 55.1 36 66.7


User provided reference genes

Program Settings