Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g087980.4 Solanum lycopersicum HOM05D007109 ORTHO05D008813 4.8e-158 561.2 303 100.0
Sopen01g034880 Solanum pennellii HOM05D007109 ORTHO05D008813 1.3e-131 473.4 259 95.8
PGSC0003DMG400041994 Solanum tuberosum HOM05D007109 ORTHO05D008813 3.7e-126 455.3 258 89.5
PGSC0003DMG402006771 Solanum tuberosum HOM05D007109 ORTHO05D008813 3.7e-126 455.3 258 89.5
CAN.G909.14 Capsicum annuum HOM05D007109 ORTHO05D008813 1.2e-111 407.1 273 76.6
Nitab4.5_0001244g0020 Nicotiana tabacum HOM05D007109 ORTHO05D008813 6.3e-102 374.8 267 72.3
Nitab4.5_0004222g0010 Nicotiana tabacum HOM05D007109 ORTHO05D008813 2.4e-101 372.9 272 70.2
Peaxi162Scf01108g00310 Petunia axillaris HOM05D007109 ORTHO05D008813 1.1e-98 364.0 275 70.9
Solyc04g050200.1 Solanum lycopersicum HOM05D007109 ORTHO05D008813 1.1e-64 251.1 152 88.2
Cc02_g28960 Coffea canephora HOM05D007109 ORTHO05D008813 2.3e-51 206.8 263 41.4
QL04p010443 Quercus lobata HOM05D007109 ORTHO05D008813 3.9e-51 206.1 276 42.8
Thecc.01G404600 Theobroma cacao HOM05D007109 ORTHO05D008813 2.1e-49 200.3 268 39.6
Duzib138G1369 Durio zibethinus HOM05D007109 ORTHO05D008813 4.0e-48 196.1 268 41.0
Prupe.2G023200 Prunus persica HOM05D007109 ORTHO05D008813 5.3e-48 195.7 265 38.1
Dinv07428 Davidia involucrata HOM05D007109 ORTHO05D008813 1.2e-47 194.5 243 43.6
MD07G1022700 Malus domestica HOM05D007109 ORTHO05D008813 1.3e-46 191.0 267 40.4
Cfa010821 Carpinus fangiana HOM05D007109 ORTHO05D008813 2.9e-46 189.9 274 37.6
Actinidia19426 Actinidia chinensis HOM05D007109 ORTHO05D008813 5.4e-45 185.7 272 44.5
MD02G1301300 Malus domestica HOM05D007109 ORTHO05D008813 7.1e-45 185.3 266 39.5
MD07G1022600 Malus domestica HOM05D007109 ORTHO05D008813 9.3e-45 184.9 269 40.5
FAN10G2826 Fragaria x ananassa HOM05D007109 ORTHO05D008813 6.0e-44 182.2 267 38.6
FvH4_7g01730 Fragaria vesca HOM05D007109 ORTHO05D008813 1.0e-43 181.4 267 40.1
FAN03G1693 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.0e-43 181.4 267 39.7
FAN06G2427 Fragaria x ananassa HOM05D007109 ORTHO05D008813 1.0e-43 181.4 267 40.1
Medtr3g028060 Medicago truncatula HOM05D007109 ORTHO05D008813 1.0e-43 181.4 264 37.1
RcHm_v2.0_Chr1g0318291 Rosa chinensis HOM05D007109 ORTHO05D008813 3.0e-43 179.9 269 40.1
Lalb_Chr01g0000491 Lupinus albus HOM05D007109 ORTHO05D008813 3.9e-43 179.5 275 40.4
Manes.07G011500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.1e-42 177.9 268 37.7
Medtr0003s0580 Medicago truncatula HOM05D007109 ORTHO05D008813 1.1e-42 177.9 262 40.5
Potri.009G055800 Populus trichocarpa HOM05D007109 ORTHO05D008813 1.1e-42 177.9 269 38.3
Duzib133G0385 Durio zibethinus HOM05D007109 ORTHO05D008813 1.5e-42 177.6 267 36.3
Phvul.005G036000 Phaseolus vulgaris HOM05D007109 ORTHO05D008813 4.3e-42 176.0 269 38.3
Sabra09G0040900 Salix brachista HOM05D007109 ORTHO05D008813 4.3e-42 176.0 269 37.5
Gohir.D08G162700 Gossypium hirsutum HOM05D007109 ORTHO05D008813 5.6e-42 175.6 268 39.6
CiPaw.13G008200 Carya illinoinensis HOM05D007109 ORTHO05D008813 7.4e-42 175.3 274 38.0
Atru.chr11.2527 Acer truncatum HOM05D007109 ORTHO05D008813 1.3e-41 174.5 282 35.1
arahy.Tifrunner.gnm1.ann1.K9M8RY Arachis hypogaea HOM05D007109 ORTHO05D008813 1.3e-41 174.5 233 39.1
COL.COLO4_12331 Corchorus olitorius HOM05D007109 ORTHO05D008813 1.3e-41 174.5 273 38.5
CiPaw.15G135600 Carya illinoinensis HOM05D007109 ORTHO05D008813 2.1e-41 173.7 269 37.5
TPR.G8349 Trifolium pratense HOM05D007109 ORTHO05D008813 2.1e-41 173.7 288 40.6
Gorai.004G169100 Gossypium raimondii HOM05D007109 ORTHO05D008813 3.7e-41 172.9 269 39.4
Lj3g0020735 Lotus japonicus HOM05D007109 ORTHO05D008813 6.2e-41 172.2 269 39.4
Glyma.04G142400 Glycine max HOM05D007109 ORTHO05D008813 8.1e-41 171.8 261 37.9
Ca_26440_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 1.8e-40 170.6 256 39.5
Oeu014598.1 Olea europaea HOM05D007109 ORTHO05D008813 2.4e-40 170.2 248 39.1
Eucgr.G03285 Eucalyptus grandis HOM05D007109 ORTHO05D008813 4.0e-40 169.5 258 35.7
Psat7g150920 Pisum sativum HOM05D007109 ORTHO05D008813 4.0e-40 169.5 271 36.9
CiPaw.14G003600 Carya illinoinensis HOM05D007109 ORTHO05D008813 5.3e-40 169.1 274 36.1
Duzib268G1698 Durio zibethinus HOM05D007109 ORTHO05D008813 5.3e-40 169.1 240 37.5
Lalb_Chr25g0282601 Lupinus albus HOM05D007109 ORTHO05D008813 6.9e-40 168.7 266 36.8
Rhsim07G0059100 Rhododendron simsii HOM05D007109 ORTHO05D008813 1.2e-39 167.9 270 38.1
Ciclev10032181m.g Citrus clementina HOM05D007109 ORTHO05D008813 2.6e-39 166.8 257 38.1
Nn7g36341 Nelumbo nucifera HOM05D007109 ORTHO05D008813 5.8e-39 165.6 278 33.5
Manes.10G135500 Manihot esculenta HOM05D007109 ORTHO05D008813 1.7e-38 164.1 240 37.5
MSTRG.20556 Avicennia marina HOM05D007109 ORTHO05D008813 2.2e-38 163.7 245 40.8
Lj3g0012595 Lotus japonicus HOM05D007109 ORTHO05D008813 1.9e-37 160.6 289 36.3
TPR.G14571 Trifolium pratense HOM05D007109 ORTHO05D008813 2.4e-37 160.2 264 36.4
CANSAT80G2748 Cannabis sativa HOM05D007109 ORTHO05D008813 5.5e-37 159.1 271 37.3
TWI73G0029 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 5.5e-37 159.1 268 37.3
Hma1.2p1_0269F.1_g107760 Hydrangea macrophylla HOM05D007109 ORTHO05D008813 9.3e-37 158.3 282 36.9
Glyma.11G159021 Glycine max HOM05D007109 ORTHO05D008813 1.2e-36 157.9 271 36.9
TWI09G0588 Tripterygium wilfordii HOM05D007109 ORTHO05D008813 1.6e-36 157.5 274 35.4
TAR633G0887 Trochodendron aralioides HOM05D007109 ORTHO05D008813 4.6e-36 156.0 272 35.3
Cpa.g.c33908 Carica papaya HOM05D007109 ORTHO05D008813 1.8e-35 154.1 273 37.0
ECA248G3518 Erigeron canadensis HOM05D007109 ORTHO05D008813 3.0e-35 153.3 230 35.2
Cpa.g.sc125.54 Carica papaya HOM05D007109 ORTHO05D008813 5.1e-35 152.5 273 37.0
Lsat_1_v5_gn_1_104740 Lactuca sativa HOM05D007109 ORTHO05D008813 1.3e-33 147.9 242 38.0
THA.LOC104827430 Tarenaya hassleriana HOM05D007109 ORTHO05D008813 1.3e-33 147.9 275 33.8
vmacro13699 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 2.1e-33 147.1 276 36.6
Lsat_1_v5_gn_1_104720 Lactuca sativa HOM05D007109 ORTHO05D008813 2.8e-33 146.7 227 36.6
vmacro13701 Vaccinium macrocarpon HOM05D007109 ORTHO05D008813 1.4e-32 144.4 279 36.9
HanXRQChr01g0007891 Helianthus annuus HOM05D007109 ORTHO05D008813 3.1e-32 143.3 229 34.9
MSTRG.17005 Avicennia marina HOM05D007109 ORTHO05D008813 4.0e-32 142.9 272 34.9
Migut.B01258 Erythranthe guttata HOM05D007109 ORTHO05D008813 5.3e-32 142.5 271 37.6
Rhsim01G0124900 Rhododendron simsii HOM05D007109 ORTHO05D008813 9.0e-32 141.7 242 36.8
MSTRG.5044 Avicennia marina HOM05D007109 ORTHO05D008813 1.5e-31 141.0 237 34.6
Ca_27474_v3 Cicer arietinum L. HOM05D007109 ORTHO05D008813 7.6e-31 138.7 270 33.0
Gohir.A08G141600 Gossypium hirsutum HOM05D007109 ORTHO05D008813 1.3e-30 137.9 270 37.4
Migut.B01259 Erythranthe guttata HOM05D007109 ORTHO05D008813 1.1e-29 134.8 261 31.8
Oeu049473.1 Olea europaea HOM05D007109 ORTHO05D008813 1.9e-29 134.0 255 36.9
MELO3C024000.2 Cucumis melo HOM05D007109 ORTHO05D008813 2.5e-29 133.7 235 34.9
ClCG09G004450 Citrullus lanatus HOM05D007109 ORTHO05D008813 2.7e-28 130.2 257 29.2
Actinidia23253 Actinidia chinensis HOM05D007109 ORTHO05D008813 7.9e-28 128.6 189 41.3
SGA_v2.0_scaffold4G02475 Striga asiatica HOM05D007109 ORTHO05D008813 2.3e-27 127.1 274 33.2
Medtr3g034410 Medicago truncatula HOM05D007109 ORTHO05D008813 3.0e-27 126.7 264 31.1
ClCG10G012150 Citrullus lanatus HOM05D007109 ORTHO05D008813 5.1e-27 125.9 268 32.5
Medtr3g034370 Medicago truncatula HOM05D007109 ORTHO05D008813 5.7e-26 122.5 182 37.4
SalBow5G4816 Salvia bowleyana HOM05D007109 ORTHO05D008813 2.2e-25 120.6 246 32.9
MELO3C023587.2 Cucumis melo HOM05D007109 ORTHO05D008813 6.3e-25 119.0 259 25.9
SalBow5G4465 Salvia bowleyana HOM05D007109 ORTHO05D008813 6.3e-25 119.0 247 32.4
CsaV3_7G030690 Cucumis sativus L. HOM05D007109 ORTHO05D008813 4.1e-24 116.3 272 25.7
VMungo1080G0219 Vigna mungo HOM05D007109 ORTHO05D008813 1.5e-23 114.4 176 36.4
Sed0006814 Sechium edule HOM05D007109 ORTHO05D008813 2.6e-23 113.6 265 31.7
Sed0007712 Sechium edule HOM05D007109 ORTHO05D008813 1.0e-22 111.7 265 31.3
Sed0019738 Sechium edule HOM05D007109 ORTHO05D008813 1.3e-22 111.3 230 29.1
Sed0023192 Sechium edule HOM05D007109 ORTHO05D008813 7.2e-21 105.5 258 26.0
unitig_22.g5431 Utricularia gibba HOM05D007109 ORTHO05D008813 3.0e-19 100.1 194 33.5
Gohir.A12G100450 Gossypium hirsutum HOM05D007109 ORTHO05D008813 4.3e-18 96.3 126 38.9
SGA_v2.0_scaffold354G49753 Striga asiatica HOM05D007109 ORTHO05D008813 7.4e-18 95.5 246 28.0
AUR62009423 Chenopodium quinoa HOM05D007109 ORTHO05D008813 4.8e-17 92.8 235 30.2
Actinidia08354 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.1e-16 91.7 126 41.3
Actinidia25349 Actinidia chinensis HOM05D007109 ORTHO05D008813 1.1e-16 91.7 126 41.3
Sc14g0004980 Simmondsia chinensis HOM05D007109 ORTHO05D008813 1.1e-16 91.7 133 38.3
AUR62023101 Chenopodium quinoa HOM05D007109 ORTHO05D008813 2.4e-16 90.5 236 28.8
Ah.10g038560 Amaranthus hybridus HOM05D007109 ORTHO05D008813 4.1e-16 89.7 271 28.4
TPR.G40170 Trifolium pratense HOM05D007109 ORTHO05D008813 7.2e-13 79.0 99 39.4
ATR0782G062 Amborella trichopoda HOM05D002440 ORTHO05D008813 2.0e-07 60.8 99 33.3
Phvul.008G059600 Phaseolus vulgaris HOM05D002440 ORTHO05D002576 3.4e-07 60.1 114 28.9
SEGI_08203 Sequoiadendron giganteum HOM05D002440 ORTHO05D002576 1.0e-06 58.5 107 29.9
MELO3C021186.2 Cucumis melo HOM05D002440 ORTHO05D002576 1.7e-06 57.8 110 30.9
ClCG06G003470 Citrullus lanatus HOM05D002440 ORTHO05D002576 2.2e-06 57.4 110 30.0
Gohir.A11G091300 Gossypium hirsutum HOM05D002440 ORTHO05D002576 2.9e-06 57.0 117 28.2
Sed0020411 Sechium edule HOM05D002440 ORTHO05D002576 2.9e-06 57.0 110 30.0
Gohir.D11G097700 Gossypium hirsutum HOM05D002440 ORTHO05D002576 5.0e-06 56.2 115 27.8
unitig_749.g14346 Utricularia gibba HOM05D002440 ORTHO05D002576 5.0e-06 56.2 131 29.0
VMungo1383G1374 Vigna mungo HOM05D002440 ORTHO05D002576 8.5e-06 55.5 110 28.2


User provided reference genes

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