Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 0.0e+00 1137.9 599 100.0
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 0.0e+00 1131.7 599 99.3
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 0.0e+00 1117.1 596 98.5
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 0.0e+00 1084.3 599 94.7
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 2.3e-305 1051.6 599 91.0
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 2.4e-302 1041.6 582 93.1
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 8.5e-300 1033.1 581 92.4
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 2.1e-258 895.6 598 79.6
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.2e-253 879.8 598 76.4
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 2.0e-253 879.0 618 75.7
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 4.5e-253 877.9 600 78.2
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 7.3e-251 870.5 598 76.6
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 3.6e-250 868.2 596 76.2
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 2.3e-249 865.5 592 77.0
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 1.5e-248 862.8 600 75.5
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 3.4e-248 861.7 597 76.4
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 3.4e-248 861.7 597 76.4
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 7.5e-248 860.5 593 76.9
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 9.8e-248 860.1 597 76.4
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 2.9e-247 858.6 597 76.2
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 2.9e-247 858.6 597 75.9
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 8.3e-247 857.1 600 75.7
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 1.1e-246 856.7 598 75.4
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 9.2e-246 853.6 598 76.1
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.3e-244 849.7 597 74.4
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 1.7e-244 849.4 590 76.1
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 3.0e-244 848.6 598 74.4
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 2.5e-243 845.5 605 73.6
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 2.5e-243 845.5 598 74.2
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 3.3e-243 845.1 597 74.0
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 3.3e-243 845.1 591 74.8
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 5.6e-243 844.3 600 74.7
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 4.7e-242 841.3 593 75.4
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.4e-241 839.7 595 74.8
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 3.1e-241 838.6 600 73.5
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 4.0e-241 838.2 599 72.5
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 8.9e-241 837.0 598 74.4
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.5e-240 836.3 598 73.7
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 1.5e-240 836.3 599 73.5
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 4.4e-240 834.7 598 73.4
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 5.8e-240 834.3 598 74.1
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 9.8e-240 833.6 601 74.0
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.3e-239 833.2 590 73.6
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 1.3e-239 833.2 598 73.9
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.3e-239 833.2 602 73.3
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.9e-239 832.0 595 74.3
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 3.7e-239 831.6 511 84.0
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.7e-239 831.6 589 75.2
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 3.7e-239 831.6 590 73.2
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 6.4e-239 830.9 598 73.1
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 6.4e-239 830.9 588 73.5
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 1.1e-238 830.1 592 74.8
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.1e-238 830.1 597 73.4
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 1.9e-238 829.3 599 74.1
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.9e-238 829.3 597 73.4
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.4e-238 828.9 597 73.7
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 2.4e-238 828.9 590 73.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 3.2e-238 828.6 590 73.2
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 4.1e-238 828.2 597 73.5
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 5.4e-238 827.8 596 73.2
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 7.0e-238 827.4 590 72.7
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 7.0e-238 827.4 596 74.2
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 9.2e-238 827.0 590 72.4
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 9.2e-238 827.0 598 73.1
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 1.6e-237 826.2 600 73.8
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 1.6e-237 826.2 590 72.4
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 1.6e-237 826.2 602 74.3
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 2.1e-237 825.9 590 72.9
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 2.1e-237 825.9 590 72.9
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 2.7e-237 825.5 590 74.7
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 3.5e-237 825.1 599 71.8
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 3.5e-237 825.1 600 73.3
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 6.0e-237 824.3 590 72.5
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 7.8e-237 823.9 599 73.0
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.0e-236 823.5 594 72.7
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 3.9e-236 821.6 600 73.5
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 5.1e-236 821.2 589 72.8
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 6.6e-236 820.8 596 73.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.1e-235 820.1 589 71.8
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 3.3e-235 818.5 598 72.7
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 4.3e-235 818.1 593 72.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 4.3e-235 818.1 598 73.7
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 4.3e-235 818.1 598 73.6
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 5.6e-235 817.8 598 72.7
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 5.6e-235 817.8 589 73.5
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.2e-234 816.6 598 74.4
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 1.2e-234 816.6 600 71.7
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 6.2e-234 814.3 566 74.9
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.4e-233 813.1 562 76.0
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 1.8e-233 812.8 591 72.1
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 3.1e-233 812.0 589 72.3
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 5.2e-233 811.2 591 72.4
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 6.8e-233 810.8 596 71.6
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 2.0e-232 809.3 591 72.4
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 3.4e-232 808.5 565 74.9
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.3e-231 806.6 586 72.5
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 4.9e-231 804.7 596 71.8
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 2.4e-230 802.4 600 71.2
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 4.1e-230 801.6 575 73.7
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 9.2e-230 800.4 590 71.4
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.6e-229 799.7 607 71.2
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 2.1e-229 799.3 508 80.9
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 1.7e-228 796.2 633 68.4
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 3.9e-228 795.0 563 74.2
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 2.5e-227 792.3 601 70.2
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 4.3e-227 791.6 600 69.5
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 4.3e-227 791.6 702 62.7
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 4.2e-222 775.0 699 62.8
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 7.8e-221 770.8 598 69.9
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 1.1e-219 766.9 598 69.1
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 1.9e-219 766.1 601 69.7
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 1.1e-217 760.4 598 68.7
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 2.9e-215 752.3 566 69.3
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 1.3e-210 736.9 595 66.6
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.5e-208 729.9 584 66.1
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 1.4e-206 723.4 600 65.0
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 1.5e-203 713.4 593 65.1
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 5.6e-203 711.4 596 63.4
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 1.6e-197 693.3 485 74.8
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 7.4e-195 684.5 522 68.4
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 1.8e-188 663.3 597 61.8
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 6.1e-181 638.3 433 77.6
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 4.5e-176 622.1 449 72.6
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 2.7e-173 612.8 480 67.5
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 6.1e-173 611.7 507 67.9
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 2.4e-161 573.2 536 59.7
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 2.5e-150 536.6 390 73.3
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 5.2e-148 528.9 372 72.8
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 6.1e-141 505.4 588 48.8
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 3.5e-136 489.6 326 79.1
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 3.4e-131 473.0 400 66.5
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 8.3e-130 468.4 580 53.3
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 1.5e-118 431.0 314 72.6
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 7.8e-112 408.7 252 81.7
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 1.3e-106 391.3 509 45.8
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.1e-97 361.7 609 40.2
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.4e-92 344.0 231 79.2
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 4.5e-91 339.7 230 75.2
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.7e-78 296.2 203 75.9
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 1.3e-74 285.0 210 68.6
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 2.1e-64 251.1 258 52.7
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.0e-62 244.6 320 43.8
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 2.7e-48 197.6 127 78.0
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 1.4e-44 185.3 255 42.7
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 3.7e-37 160.6 129 65.9
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 1.2e-30 139.0 137 57.7
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 5.2e-23 113.6 106 58.5
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 5.7e-22 110.2 104 59.6
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.9e-21 107.1 250 37.2
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 5.9e-19 100.1 100 59.0
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 1.1e-17 95.9 80 62.5
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 4.3e-17 94.0 52 86.5
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 4.3e-17 94.0 52 86.5
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.6e-17 93.6 50 86.0
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 4.4e-14 84.0 65 69.2
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 3.5e-11 74.3 71 56.3
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 4.6e-11 73.9 70 57.1
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 4.6e-11 73.9 71 56.3
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 6.0e-11 73.6 60 63.3
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 3.9e-10 70.9 77 53.2
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.8e-08 64.7 30 90.0
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.8e-08 64.7 30 90.0
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 3.6e-08 64.3 57 50.9
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 1.5e-06 58.9 76 52.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.4e-06 57.8 214 26.2


User provided reference genes

Program Settings