Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g087520.3 Solanum lycopersicum HOM05D005289 ORTHO05D006346 1.6e-89 332.8 172 100.0
Sopen01g034490 Solanum pennellii HOM05D005289 ORTHO05D006346 1.6e-86 322.8 172 97.1
PGSC0003DMG400006858 Solanum tuberosum HOM05D005289 ORTHO05D006346 2.1e-86 322.4 172 97.1
Nitab4.5_0000707g0260 Nicotiana tabacum HOM05D005289 ORTHO05D006346 2.3e-64 249.2 172 75.6
Nitab4.5_0006228g0010 Nicotiana tabacum HOM05D005289 ORTHO05D006346 5.1e-64 248.1 172 76.2
CAN.G219.47 Capsicum annuum HOM05D005289 ORTHO05D006346 1.9e-58 229.6 173 75.7
Cc02_g28180 Coffea canephora HOM05D005289 ORTHO05D006346 3.5e-41 172.2 178 59.0
Peaxi162Scf00019g00006 Petunia axillaris HOM05D005289 ORTHO05D006346 1.3e-40 170.2 158 65.2
Migut.N01609 Erythranthe guttata HOM05D005289 ORTHO05D006346 1.2e-33 147.1 181 50.3
SGA_v2.0_scaffold24G10667 Striga asiatica HOM05D005289 ORTHO05D006346 1.3e-32 143.7 172 51.2
SalBow6G0941 Salvia bowleyana HOM05D005289 ORTHO05D006346 9.7e-31 137.5 173 52.6
Oeu049492.1 Olea europaea HOM05D005289 ORTHO05D006346 1.6e-30 136.7 191 47.1
DCAR_006352 Daucus carota HOM05D005289 ORTHO05D006346 3.7e-30 135.6 134 53.0
MSTRG.5030 Avicennia marina HOM05D005289 ORTHO05D006346 1.4e-29 133.7 180 46.1
Oeu049005.1 Olea europaea HOM05D005289 ORTHO05D006346 7.6e-28 127.9 186 46.2
unitig_699.g19828 Utricularia gibba HOM05D005289 ORTHO05D006346 7.6e-28 127.9 173 46.2
CANSAT78G0451 Cannabis sativa HOM05D005289 ORTHO05D006346 5.0e-27 125.2 88 70.5
vmacro13683 Vaccinium macrocarpon HOM05D005289 ORTHO05D006346 5.0e-27 125.2 114 59.6
Rhsim07G0056900 Rhododendron simsii HOM05D005289 ORTHO05D006346 6.5e-27 124.8 111 60.4
RhsimUnG0144200 Rhododendron simsii HOM05D005289 ORTHO05D006346 6.5e-27 124.8 111 60.4
Lj9P634T19 Lonicera japonica HOM05D005289 ORTHO05D006346 8.5e-27 124.4 111 61.3
MBI03_g11910_MAGBIO Magnolia biondii HOM05D005289 ORTHO05D006346 8.5e-27 124.4 170 48.2
THA.LOC104800596 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 8.5e-27 124.4 142 52.1
Manes.16G000200 Manihot esculenta HOM05D005289 ORTHO05D006346 1.1e-26 124.0 110 60.9
HanXRQChr17g0563021 Helianthus annuus HOM05D005289 ORTHO05D006346 1.4e-26 123.6 114 59.6
Manes.16G039900 Manihot esculenta HOM05D005289 ORTHO05D006346 1.9e-26 123.2 108 63.0
Gohir.A03G168400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.5e-26 122.9 110 63.6
Ca_04131_v3 Cicer arietinum L. HOM05D005289 ORTHO05D006346 4.2e-26 122.1 89 65.2
Oeu006561.1 Olea europaea HOM05D005289 ORTHO05D006346 7.2e-26 121.3 176 44.9
Gohir.D02G191500 Gossypium hirsutum HOM05D005289 ORTHO05D006346 9.3e-26 120.9 110 62.7
Gorai.005G214300 Gossypium raimondii HOM05D005289 ORTHO05D006346 9.3e-26 120.9 110 62.7
CSS0022575 Camellia sinensis var. sinensis HOM05D005289 ORTHO05D006346 1.2e-25 120.6 107 58.9
Medtr6g004100 Medicago truncatula HOM05D005289 ORTHO05D006346 1.2e-25 120.6 107 58.9
Manes.16G040000 Manihot esculenta HOM05D005289 ORTHO05D006346 2.1e-25 119.8 110 60.0
MD16G1005600 Malus domestica HOM05D005289 ORTHO05D006346 3.6e-25 119.0 133 52.6
RcHm_v2.0_Chr4g0447301 Rosa chinensis HOM05D005289 ORTHO05D006346 3.6e-25 119.0 138 51.4
Duzib132G0443 Durio zibethinus HOM05D005289 ORTHO05D006346 4.6e-25 118.6 108 60.2
A02p40970 Brassica napus HOM05D005289 ORTHO05D006346 6.1e-25 118.2 102 60.8
Carub.0006s2124 Capsella rubella HOM05D005289 ORTHO05D006346 6.1e-25 118.2 90 65.6
Manes.14G174500 Manihot esculenta HOM05D005289 ORTHO05D006346 1.3e-24 117.1 80 71.2
C02p60860 Brassica napus HOM05D005289 ORTHO05D006346 1.8e-24 116.7 105 58.1
Lsat_1_v5_gn_4_31381 Lactuca sativa HOM05D005289 ORTHO05D006346 1.8e-24 116.7 107 56.1
Prupe.1G352600 Prunus persica HOM05D005289 ORTHO05D006346 1.8e-24 116.7 122 52.5
Dinv09331 Davidia involucrata HOM05D005289 ORTHO05D006346 2.3e-24 116.3 163 44.2
Aa31LG3G18150 Aethionema arabicum HOM05D005289 ORTHO05D006346 3.0e-24 115.9 111 55.0
BraA02t09045Z Brassica rapa HOM05D005289 ORTHO05D006346 3.0e-24 115.9 102 59.8
Dinv43423 Davidia involucrata HOM05D005289 ORTHO05D006346 3.9e-24 115.5 82 70.7
CARHR190070 Cardamine hirsuta HOM05D005289 ORTHO05D006346 5.1e-24 115.2 103 59.2
Lsat_1_v5_gn_4_31280 Lactuca sativa HOM05D007122 ORTHO05D008918 6.7e-24 114.8 175 42.9
BcaB01g05599 Brassica carinata HOM05D005289 ORTHO05D006346 8.7e-24 114.4 107 58.9
BolC2t12138H Brassica oleracea HOM05D005289 ORTHO05D006346 8.7e-24 114.4 105 58.1
Eucgr.G02623 Eucalyptus grandis HOM05D005289 ORTHO05D006346 1.5e-23 113.6 80 68.8
Thhalv10005472m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 1.5e-23 113.6 79 72.2
Ciclev10017019m.g Citrus clementina HOM05D005289 ORTHO05D006346 1.9e-23 113.2 95 63.2
Lj2g0002318 Lotus japonicus HOM05D005289 ORTHO05D006346 1.9e-23 113.2 146 46.6
MD13G1000200 Malus domestica HOM05D005289 ORTHO05D006346 1.9e-23 113.2 114 56.1
Nn7g38127 Nelumbo nucifera HOM05D005289 ORTHO05D006346 1.9e-23 113.2 85 64.7
AL6G34730 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 4.3e-23 112.1 81 69.1
arahy.Tifrunner.gnm1.ann1.CPCZ9R Arachis hypogaea HOM05D005289 ORTHO05D006346 4.3e-23 112.1 161 46.0
Duzib248G0326 Durio zibethinus HOM05D005289 ORTHO05D006346 4.3e-23 112.1 169 43.2
Sed0008094 Sechium edule HOM05D005289 ORTHO05D006346 4.3e-23 112.1 84 65.5
VMungo0464G1452 Vigna mungo HOM05D005289 ORTHO05D006346 4.3e-23 112.1 90 61.1
FAN07G0133 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.7e-23 111.7 112 55.4
FAN07G0378 Fragaria x ananassa HOM05D005289 ORTHO05D006346 5.7e-23 111.7 112 55.4
Sp2g23720 Schrenkiella parvula HOM05D005289 ORTHO05D006346 5.7e-23 111.7 80 70.0
Cpa.g.sc248.7 Carica papaya HOM05D005289 ORTHO05D006346 7.4e-23 111.3 103 56.3
CiPaw.16G000100 Carya illinoinensis HOM05D005289 ORTHO05D006346 7.4e-23 111.3 103 55.3
PSO782G1364 Papaver somniferum HOM05D005289 ORTHO05D006346 9.7e-23 110.9 101 58.4
PGR142G2143 Punica granatum HOM05D005289 ORTHO05D006346 9.7e-23 110.9 100 59.0
Sed0001576 Sechium edule HOM05D005289 ORTHO05D006346 9.7e-23 110.9 173 43.9
TPR.G25213 Trifolium pratense HOM05D005289 ORTHO05D006346 9.7e-23 110.9 101 53.5
C03p04320 Brassica napus HOM05D005289 ORTHO05D006346 1.3e-22 110.5 118 51.7
BolC3t12965H Brassica oleracea HOM05D005289 ORTHO05D006346 1.3e-22 110.5 118 51.7
BraA03t09731Z Brassica rapa HOM05D002331 ORTHO05D002624 1.3e-22 110.5 118 50.8
Cfa018663 Carpinus fangiana HOM05D005289 ORTHO05D006346 1.3e-22 110.5 80 67.5
Hund08591 Selenicereus undatus HOM05D005289 ORTHO05D006346 1.3e-22 110.5 107 57.0
Sc06g0007700 Simmondsia chinensis HOM05D005289 ORTHO05D006346 1.3e-22 110.5 119 51.3
Zm00001eb248360 Zea mays HOM05D005289 ORTHO05D006346 1.3e-22 110.5 103 54.4
BcaB01g05597 Brassica carinata HOM05D005289 ORTHO05D006346 1.7e-22 110.2 113 53.1
CsaV3_5G029240 Cucumis sativus L. HOM05D005289 ORTHO05D006346 1.7e-22 110.2 86 64.0
Os02g0638300 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.7e-22 110.2 91 57.1
AT5G23440 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 2.2e-22 109.8 139 46.0
MELO3C011776.2 Cucumis melo HOM05D004444 ORTHO05D005246 2.2e-22 109.8 86 62.8
FvH4_4g37381 Fragaria vesca HOM05D005289 ORTHO05D006346 2.2e-22 109.8 112 54.5
FAN17G1203 Fragaria x ananassa HOM05D005289 ORTHO05D006346 2.2e-22 109.8 112 54.5
A03p03840 Brassica napus HOM05D002331 ORTHO05D002624 2.8e-22 109.4 171 42.7
ECA234G0076 Erigeron canadensis HOM05D005289 ORTHO05D006346 2.8e-22 109.4 149 45.0
ClCG11G012840 Citrullus lanatus HOM05D005289 ORTHO05D006346 3.7e-22 109.0 86 62.8
THA.LOC104819368 Tarenaya hassleriana HOM05D005289 ORTHO05D006346 3.7e-22 109.0 75 73.3
TAR376G0259 Trochodendron aralioides HOM05D005289 ORTHO05D006346 3.7e-22 109.0 99 57.6
QL01p000104 Quercus lobata HOM05D005289 ORTHO05D006346 4.8e-22 108.6 89 59.6
Thhalv10014787m.g Eutrema salsugineum HOM05D005289 ORTHO05D006346 6.3e-22 108.2 79 68.4
PSO063G1455 Papaver somniferum HOM05D005289 ORTHO05D006346 6.3e-22 108.2 172 41.9
Hma1.2p1_2160F.1_g315560 Hydrangea macrophylla HOM05D005289 ORTHO05D006346 1.1e-21 107.5 164 42.7
Phvul.004G000400 Phaseolus vulgaris HOM05D005289 ORTHO05D006346 1.1e-21 107.5 90 60.0
TWI77G0922 Tripterygium wilfordii HOM05D005289 ORTHO05D006346 1.1e-21 107.5 175 43.4
Atru.chr11.6 Acer truncatum HOM05D005289 ORTHO05D006346 2.4e-21 106.3 81 64.2
PGR044G1862 Punica granatum HOM05D005289 ORTHO05D006346 4.1e-21 105.5 179 41.3
HPP92_004266 Vanilla planifolia HOM05D005289 ORTHO05D006346 5.3e-21 105.1 114 46.5
Zm00001eb075910 Zea mays HOM05D005289 ORTHO05D006346 5.3e-21 105.1 102 53.9
AL6G18870 Arabidopsis lyrata HOM05D005289 ORTHO05D006346 6.9e-21 104.8 80 63.8
AT5G08410 Arabidopsis thaliana HOM05D005289 ORTHO05D006346 6.9e-21 104.8 80 63.8
Ah.15g093460 Amaranthus hybridus HOM05D005289 ORTHO05D006346 9.1e-21 104.4 173 42.2
Sp6g34530 Schrenkiella parvula HOM05D005289 ORTHO05D006346 9.1e-21 104.4 77 67.5
CARHR204630 Cardamine hirsuta HOM05D005289 ORTHO05D006346 1.2e-20 104.0 80 62.5
MSTRG.28061 Avicennia marina HOM05D005289 ORTHO05D006346 1.5e-20 103.6 158 43.7
Glyma.05G000300 Glycine max HOM05D005289 ORTHO05D006346 1.5e-20 103.6 90 57.8
Os04g0528800 Oryza sativa ssp. japonica HOM05D005289 ORTHO05D006346 1.5e-20 103.6 143 42.7
Thecc.02G151000 Theobroma cacao HOM05D005289 ORTHO05D006346 1.5e-20 103.6 183 42.1
Carub.0006s0732 Capsella rubella HOM05D005289 ORTHO05D006346 2.0e-20 103.2 80 62.5
Zm00001eb185670 Zea mays HOM05D005289 ORTHO05D006346 2.0e-20 103.2 85 58.8
Aqoxy3G04359 Aquilegia oxysepala HOM05D005289 ORTHO05D006346 7.7e-20 101.3 123 49.6
CDE11G0284 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 7.7e-20 101.3 109 51.4
Actinidia31077 Actinidia chinensis HOM05D005289 ORTHO05D006346 1.7e-19 100.1 166 42.8
ATR0124G002 Amborella trichopoda HOM05D005289 ORTHO05D006346 3.8e-19 99.0 82 57.3
CDE05G2330 Ceratophyllum demersum HOM05D005289 ORTHO05D006346 6.5e-19 98.2 107 51.4
Glyma.19G000200 Glycine max HOM05D005289 ORTHO05D006346 6.5e-19 98.2 81 63.0
Potri.010G255500 Populus trichocarpa HOM05D005289 ORTHO05D006346 6.5e-19 98.2 83 62.7
Sabra10G0198900 Salix brachista HOM05D005289 ORTHO05D006346 1.1e-18 97.4 86 61.6
Gohir.A12G011400 Gossypium hirsutum HOM05D005289 ORTHO05D006346 3.2e-18 95.9 110 52.7
SEGI_30396 Sequoiadendron giganteum HOM05D005289 ORTHO05D006346 9.4e-18 94.4 85 57.6
Gohir.D12G011800 Gossypium hirsutum HOM05D005289 ORTHO05D006346 2.7e-17 92.8 110 50.9
Sabra08G0000100 Salix brachista HOM05D005289 ORTHO05D006346 3.6e-17 92.4 83 57.8
Eucgr.J00323 Eucalyptus grandis HOM05D005289 ORTHO05D006346 4.7e-17 92.0 80 56.2
MD10G1109200 Malus domestica HOM05D005289 ORTHO05D006346 4.7e-17 92.0 71 66.2
Potri.008G002200 Populus trichocarpa HOM05D005289 ORTHO05D006346 7.9e-17 91.3 83 56.6
AagrBONN_evm.TU.Sc2ySwM_344.750 Anthoceros agrestis HOM05D005289 ORTHO05D006346 1.4e-16 90.5 80 56.2
Pp3c4_31020 Physcomitrium patens HOM05D005289 ORTHO05D006346 1.4e-16 90.5 82 58.5
AUR62028426 Chenopodium quinoa HOM05D005289 ORTHO05D006346 1.8e-16 90.1 96 53.1
Gorai.008G011800 Gossypium raimondii HOM05D005289 ORTHO05D006346 1.8e-16 90.1 152 42.1
AUR62038497 Chenopodium quinoa HOM05D005289 ORTHO05D006346 3.9e-16 89.0 90 53.3
Pp3c4_29510 Physcomitrium patens HOM05D005289 ORTHO05D006346 8.8e-16 87.8 82 54.9
SMO367G0363 Selaginella moellendorffii HOM05D005289 ORTHO05D006346 2.0e-15 86.7 79 55.7
AagrBONN_evm.TU.Sc2ySwM_368.462 Anthoceros agrestis HOM05D000595 ORTHO05D006346 7.4e-15 84.7 75 56.0
A06p34430 Brassica napus HOM05D005289 ORTHO05D006346 3.7e-14 82.4 76 59.2
BraA06t26372Z Brassica rapa HOM05D005289 ORTHO05D006346 3.7e-14 82.4 76 59.2
Pp3c26_13800 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.8e-14 82.0 101 46.5
Pp3c26_13840 Physcomitrium patens HOM05D005289 ORTHO05D006346 4.8e-14 82.0 101 46.5
CDE01G0630 Ceratophyllum demersum HOM05D000556 ORTHO05D006346 6.3e-14 81.6 109 41.3
Mapoly0005s0050 Marchantia polymorpha HOM05D005289 ORTHO05D006346 5.3e-13 78.6 80 50.0
EL10Ac1g01282 Beta vulgaris HOM05D005289 ORTHO05D006346 3.4e-12 75.9 80 47.5
CBR_g32063 Chara braunii HOM05D005289 ORTHO05D006346 2.9e-11 72.8 134 37.3
Cre16.g687294 Chlamydomonas reinhardtii HOM05D005289 ORTHO05D006346 2.5e-10 69.7 75 49.3
Psat1g053320 Pisum sativum HOM05D005289 ORTHO05D006346 1.6e-09 67.0 80 43.8
Ah.08g214580 Amaranthus hybridus HOM05D005289 ORTHO05D006346 2.2e-06 56.6 68 45.6


User provided reference genes

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