Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 7.8e-228 793.5 412 100.0
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 2.1e-225 785.4 412 98.8
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 1.1e-213 746.5 412 93.7
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 5.4e-197 691.0 416 88.0
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 9.6e-194 680.2 416 86.5
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 1.4e-184 649.8 416 82.0
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 9.6e-170 600.5 351 88.6
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.0e-147 527.3 417 67.1
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.6e-143 512.7 394 68.0
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 5.9e-143 511.5 404 68.1
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 1.3e-142 510.4 400 67.2
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 7.2e-141 504.6 392 67.1
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.7e-140 502.7 392 66.8
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 3.0e-139 499.2 398 66.1
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 8.8e-139 497.7 405 65.2
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 4.4e-138 495.4 423 63.1
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 1.7e-137 493.4 374 69.3
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 2.2e-137 493.0 394 64.5
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 3.7e-137 492.3 400 63.8
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 4.8e-137 491.9 408 64.2
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 8.2e-137 491.1 414 64.0
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 1.8e-136 490.0 426 62.0
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 1.2e-135 487.3 400 63.5
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 1.6e-135 486.9 407 63.9
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 1.6e-135 486.9 417 64.0
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 2.2e-134 483.0 396 63.1
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 1.1e-133 480.7 398 63.8
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 1.5e-133 480.3 396 62.4
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 1.5e-133 480.3 421 61.3
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.5e-133 480.3 402 63.9
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 2.5e-133 479.6 399 61.9
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 6.1e-132 474.9 399 61.4
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 1.8e-131 473.4 396 63.6
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 4.0e-131 472.2 455 57.6
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 3.4e-130 469.2 402 63.2
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 5.7e-130 468.4 403 63.3
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 2.8e-129 466.1 393 62.3
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.8e-129 466.1 404 61.1
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.8e-129 466.1 392 64.8
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 3.7e-129 465.7 408 61.5
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 1.1e-128 464.2 404 63.1
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 7.7e-127 458.0 457 55.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 6.5e-126 454.9 413 59.8
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 5.5e-125 451.8 394 61.2
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 5.5e-125 451.8 394 61.2
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 7.2e-125 451.4 420 58.6
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 9.4e-125 451.1 419 59.2
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 2.3e-123 446.4 403 58.6
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 2.3e-123 446.4 396 60.4
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 4.0e-123 445.7 396 59.6
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.2e-122 444.1 363 67.2
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.2e-122 444.1 396 59.3
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.5e-122 443.7 338 68.9
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.0e-122 443.4 403 57.8
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 2.0e-122 443.4 394 59.9
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 2.6e-122 443.0 394 59.4
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 3.4e-122 442.6 394 59.1
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.3e-121 440.7 418 59.3
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 2.2e-121 439.9 412 57.8
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 4.9e-121 438.7 420 58.8
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 8.3e-121 438.0 402 58.5
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 1.1e-120 437.6 400 58.5
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 9.1e-120 434.5 395 57.5
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 9.1e-120 434.5 393 60.3
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 2.0e-119 433.3 403 57.1
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 4.5e-119 432.2 365 63.8
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 6.6e-118 428.3 421 56.5
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.9e-117 426.8 418 55.7
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 3.3e-117 426.0 405 55.8
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.2e-116 424.1 405 55.6
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 1.2e-116 424.1 405 55.6
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 1.2e-116 424.1 421 58.2
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 2.1e-116 423.3 403 57.3
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 2.8e-116 422.9 399 58.1
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 4.7e-116 422.2 432 54.9
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 1.4e-115 420.6 405 56.0
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 3.0e-115 419.5 419 54.9
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 2.6e-114 416.4 412 55.3
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 2.6e-114 416.4 424 56.6
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 3.4e-114 416.0 377 58.6
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 9.8e-114 414.5 424 53.8
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 2.2e-113 413.3 396 56.6
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 6.4e-113 411.8 415 54.5
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 8.3e-113 411.4 395 56.5
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.1e-112 411.0 418 57.4
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 2.4e-112 409.8 326 65.6
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 5.4e-112 408.7 348 61.8
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 5.4e-112 408.7 325 67.1
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.0e-110 404.4 423 53.4
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 1.9e-109 400.2 336 62.8
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 2.0e-106 390.2 412 55.1
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 3.4e-106 389.4 318 65.4
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 1.3e-105 387.5 424 51.4
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 7.0e-104 381.7 424 53.3
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 1.7e-102 377.1 411 53.0
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.3e-101 372.9 342 60.5
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 6.8e-99 365.2 404 52.0
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-96 357.8 370 56.2
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 1.9e-96 357.1 330 58.8
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.3e-94 350.1 281 66.9
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 2.3e-94 350.1 344 57.3
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 1.2e-92 344.4 300 61.3
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.6e-92 344.0 281 66.9
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 3.1e-91 339.7 283 65.7
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.2e-90 337.8 451 47.2
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 1.4e-88 330.9 324 56.2
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 2.4e-88 330.1 283 61.8
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 8.6e-86 321.6 343 53.9
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 8.7e-78 295.0 367 47.7
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 1.5e-77 294.3 319 54.9
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 4.2e-64 249.6 207 60.9
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 6.7e-62 242.3 220 58.2
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 1.0e-57 228.4 417 37.9
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 3.2e-56 223.4 414 37.0
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 7.4e-53 212.2 133 80.5
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.4e-51 208.0 150 75.3
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 2.3e-46 190.7 402 33.1
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 1.1e-43 181.8 119 76.5
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 2.6e-26 124.0 98 64.3
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.2e-21 108.6 102 61.8
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 2.0e-21 107.8 87 64.4
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 5.7e-21 106.3 96 64.6
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 6.3e-20 102.8 104 53.8
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 1.3e-17 95.1 105 50.5
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 2.5e-16 90.9 113 39.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 2.2e-12 77.8 154 35.1
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 7.2e-08 62.8 172 28.5
Peaxi162Scf00684g00584 Petunia axillaris HOM05D005892 ORTHO05D007364 7.2e-08 62.8 109 47.7
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.2e-07 62.0 95 42.1


User provided reference genes

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